# STOCKHOLM 1.0
#=GF ID 3.30.450.40/FF/000108
#=GF DE GAF domain-containing protein
#=GF AC 3.30.450.40/FF/000108
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 70.248
#=GS R4NNW2/177-309      AC R4NNW2
#=GS R4NNW2/177-309      OS Thermotoga maritima MSB8
#=GS R4NNW2/177-309      DE GAF domain-containing protein
#=GS R4NNW2/177-309      DR ORG; Bacteria; Thermotogae; Thermotogae; Thermotogales; Thermotogaceae; Thermotoga; Thermotoga maritima; 
#=GS Q9WYY9/177-309      AC Q9WYY9
#=GS Q9WYY9/177-309      OS Thermotoga maritima MSB8
#=GS Q9WYY9/177-309      DE Uncharacterized protein
#=GS Q9WYY9/177-309      DR ORG; Bacteria; Thermotogae; Thermotogae; Thermotogales; Thermotogaceae; Thermotoga; Thermotoga maritima; 
#=GS A8ITZ3/12-189       AC A8ITZ3
#=GS A8ITZ3/12-189       OS Chlamydomonas reinhardtii
#=GS A8ITZ3/12-189       DE Predicted protein
#=GS A8ITZ3/12-189       DR ORG; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas; Chlamydomonas reinhardtii; 
#=GS F4P3T6/1-155        AC F4P3T6
#=GS F4P3T6/1-155        OS Batrachochytrium dendrobatidis JAM81
#=GS F4P3T6/1-155        DE Uncharacterized protein
#=GS F4P3T6/1-155        DR ORG; Eukaryota; Fungi; Chytridiomycota; Chytridiomycetes; Rhizophydiales; Batrachochytrium; Batrachochytrium dendrobatidis; 
#=GS A0A0B5KV34/177-309  AC A0A0B5KV34
#=GS A0A0B5KV34/177-309  OS Thermotoga sp. RQ7
#=GS A0A0B5KV34/177-309  DE Histidine kinase
#=GS A0A0B5KV34/177-309  DR ORG; Bacteria; Thermotogae; Thermotogae; Thermotogales; Thermotogaceae; Thermotoga; Thermotoga sp. RQ7; 
#=GS A5IJQ5/177-309      AC A5IJQ5
#=GS A5IJQ5/177-309      OS Thermotoga petrophila RKU-1
#=GS A5IJQ5/177-309      DE Putative GAF sensor protein
#=GS A5IJQ5/177-309      DR ORG; Bacteria; Thermotogae; Thermotogae; Thermotogales; Thermotogaceae; Thermotoga; Thermotoga petrophila; 
#=GF SQ 6
R4NNW2/177-309              ----------------------ILKRGKE---ALGDLCEFLRNHV------SYYDWVGFYFV---EDGKLKLGPFVGEPTEHVEIPFGVGICGQAAEREETFVVQDVSKETNYLSCSPKTKAEIVVPI------FKDGK-------IIGELDIDSYSPSPFSEEDRAFLEKVCELVSKVV-----
Q9WYY9/177-309              ----------------------ILKRGKE---ALGDLCEFLRNHV------SYYDWVGFYFV---EDGKLKLGPFVGEPTEHVEIPFGVGICGQAAEREETFVVQDVSKETNYLSCSPKTKAEIVVPI------FKDGK-------IIGELDIDSYSPSPFSEEDRAFLEKVCELVSKVV-----
A8ITZ3/12-189               PVTASNEEREARYELVLESVKSVLEGEDDWVAVMATVACLLHEAF------EYYHWTGFYQAGPPGDDTLVIGPYQGH-MGCLRIPYSRGVCGAAARTKTSQLVPDVSQFPGYIACASSTRSEVVVPVVRSHISFNDGRTPSIPEKLVAVLDVDSDHPAAFTEVDQECLEELCEWLGDHLQLWHK
F4P3T6/1-155                --------KSEFYSSLEEQAAALVDPSLPLVSNLSNLASLLYWAFHDKTINRPINWVGFYLATLKKPHTLVLGPFHGR-IACTMIHIGKGVCGTCAIERRPILVANVDEFSGHIACDSLSKSELVLPLV-----HADGR-------LLGVLDLDSTVLQGFDNADLIGLESVVQTV---------
A0A0B5KV34/177-309          ----------------------ILERGKD---ALGDLCGFLRNHV------SYYDWVGFYFV---EDGKLKLGPFVGEPTEHVEIPFGVGICGQAAEREETFVVQDVSKETNYLSCSPKTKAEIVVPI------FKDGR-------IIGELDIDSHSFSPFSEEDRRFLEKVCELVSKVV-----
A5IJQ5/177-309              ----------------------ILERGKE---ALGDLCKFLRNHV------SYYDWVGFYFV---EDGKLKLGPFVGEPTEHVEIPFGVGICGQAAEREETFVVQDVSKETNYLSCSPKTKAEIVVPI------FKDGK-------IIGELDIDSYSPSPFSEEDRAFLEKVCELVSKVV-----
#=GC scorecons              00000000000010000100005653434010464464269434500000035549699935000453494699739414454396463969945933434369469643457659453675959695100000649960000000656499599234449463932399465636222300000
#=GC scorecons_70           _______________________*_________*__*___*______________*_***_________*_****_*_______*__*_****__*_______*_**_____*__*___**_*_***_________***_________*_**_**_____*_*_*___**_*_*_*_________
#=GC scorecons_80           ________________________________________*______________*_***_________*__***_*_______*____*_**__*_______*__*_____*__*____*_*_*_*_________**____________**_**_____*___*___**_______________
#=GC scorecons_90           ________________________________________*______________*_***_________*__**__*_______*____*_**__*_______*__*________*______*_*_*_________**____________**_**_____*___*___**_______________
//