# STOCKHOLM 1.0
#=GF ID 3.30.420.390/FF/000005
#=GF DE Related to MIP1-DNA-directed DNA polymerase gamma catalytic subunit, mitochondrial
#=GF AC 3.30.420.390/FF/000005
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 56.808
#=GS A0A0D1CMM9/168-191_230-432  AC A0A0D1CMM9
#=GS A0A0D1CMM9/168-191_230-432  OS Ustilago maydis 521
#=GS A0A0D1CMM9/168-191_230-432  DE Uncharacterized protein
#=GS A0A0D1CMM9/168-191_230-432  DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Ustilago; Ustilago maydis; 
#=GS A0A0D0Y0S6/234-457          AC A0A0D0Y0S6
#=GS A0A0D0Y0S6/234-457          OS Cryptococcus gattii EJB2
#=GS A0A0D0Y0S6/234-457          DE Unplaced genomic scaffold supercont1.223, whole genome shotgun sequence
#=GS A0A0D0Y0S6/234-457          DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus gattii species complex; Cryptococcus gattii VGI; 
#=GS A0A0F7S003/164-187_229-432  AC A0A0F7S003
#=GS A0A0F7S003/164-187_229-432  OS Sporisorium scitamineum
#=GS A0A0F7S003/164-187_229-432  DE Uncharacterized protein
#=GS A0A0F7S003/164-187_229-432  DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Sporisorium; Sporisorium scitamineum; 
#=GS A0A077QWW3/164-187_226-430  AC A0A077QWW3
#=GS A0A077QWW3/164-187_226-430  OS Melanopsichium pennsylvanicum 4
#=GS A0A077QWW3/164-187_226-430  DE Related to MIP1-DNA-directed DNA polymerase gamma catalytic subunit, mitochondrial
#=GS A0A077QWW3/164-187_226-430  DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Melanopsichium; Melanopsichium pennsylvanicum; 
#=GS Q55X23/235-463              AC Q55X23
#=GS Q55X23/235-463              OS Cryptococcus neoformans var. neoformans B-3501A
#=GS Q55X23/235-463              DE Uncharacterized protein
#=GS Q55X23/235-463              DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex; Cryptococcus neoformans; Cryptococcus neoformans var. neoformans; 
#=GS I2FPZ7/165-188_229-431      AC I2FPZ7
#=GS I2FPZ7/165-188_229-431      OS Ustilago hordei Uh4857-4
#=GS I2FPZ7/165-188_229-431      DE Related to MIP1-DNA-directed DNA polymerase gamma catalytic subunit, mitochondrial
#=GS I2FPZ7/165-188_229-431      DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Ustilago; Ustilago hordei; 
#=GS E6ZN15/156-179_221-424      AC E6ZN15
#=GS E6ZN15/156-179_221-424      OS Sporisorium reilianum SRZ2
#=GS E6ZN15/156-179_221-424      DE Related to MIP1-DNA-directed DNA polymerase gamma catalytic subunit, mitochondrial
#=GS E6ZN15/156-179_221-424      DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Sporisorium; Sporisorium reilianum; 
#=GS A0A1K0GA60/165-188_229-431  AC A0A1K0GA60
#=GS A0A1K0GA60/165-188_229-431  OS Ustilago bromivora
#=GS A0A1K0GA60/165-188_229-431  DE Uncharacterized protein
#=GS A0A1K0GA60/165-188_229-431  DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Ustilago; Ustilago bromivora; 
#=GS A0A0L6DG71/234-457          AC A0A0L6DG71
#=GS A0A0L6DG71/234-457          OS Cryptococcus gattii VGII R265
#=GS A0A0L6DG71/234-457          DE DNA polymerase gamma 1
#=GS A0A0L6DG71/234-457          DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus gattii species complex; Cryptococcus gattii VGII; 
#=GS A0A0D0TEZ9/234-460          AC A0A0D0TEZ9
#=GS A0A0D0TEZ9/234-460          OS Cryptococcus gattii CA1280
#=GS A0A0D0TEZ9/234-460          DE Unplaced genomic scaffold supercont1.20, whole genome shotgun sequence
#=GS A0A0D0TEZ9/234-460          DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus gattii species complex; Cryptococcus gattii VGIII; 
#=GS A0A0D0XCS7/233-461          AC A0A0D0XCS7
#=GS A0A0D0XCS7/233-461          OS Cryptococcus gattii VGIV IND107
#=GS A0A0D0XCS7/233-461          DE Unplaced genomic scaffold supercont2.22, whole genome shotgun sequence
#=GS A0A0D0XCS7/233-461          DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus gattii species complex; Cryptococcus gattii VGIV; 
#=GS J9VFB3/235-458              AC J9VFB3
#=GS J9VFB3/235-458              OS Cryptococcus neoformans var. grubii H99
#=GS J9VFB3/235-458              DE DNA polymerase gamma 1
#=GS J9VFB3/235-458              DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex; Cryptococcus neoformans; Cryptococcus neoformans var. grubii; 
#=GS E6R1G6/234-457              AC E6R1G6
#=GS E6R1G6/234-457              OS Cryptococcus gattii WM276
#=GS E6R1G6/234-457              DE Gamma DNA-directed DNA polymerase, putative
#=GS E6R1G6/234-457              DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus gattii species complex; Cryptococcus gattii VGI; 
#=GS Q5KMW1/235-463              AC Q5KMW1
#=GS Q5KMW1/235-463              OS Cryptococcus neoformans var. neoformans JEC21
#=GS Q5KMW1/235-463              DE Gamma DNA-directed DNA polymerase, putative
#=GS Q5KMW1/235-463              DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex; Cryptococcus neoformans; Cryptococcus neoformans var. neoformans; 
#=GS A0A0D0UXU5/234-457          AC A0A0D0UXU5
#=GS A0A0D0UXU5/234-457          OS Cryptococcus gattii VGII Ram5
#=GS A0A0D0UXU5/234-457          DE Unplaced genomic scaffold supercont1.20, whole genome shotgun sequence
#=GS A0A0D0UXU5/234-457          DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus gattii species complex; Cryptococcus gattii VGII; 
#=GS A0A226BND5/235-462          AC A0A226BND5
#=GS A0A226BND5/235-462          OS Cryptococcus neoformans var. grubii Bt85
#=GS A0A226BND5/235-462          DE DNA polymerase gamma 1
#=GS A0A226BND5/235-462          DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex; Cryptococcus neoformans; Cryptococcus neoformans var. grubii; 
#=GS A0A225ZYV8/235-466          AC A0A225ZYV8
#=GS A0A225ZYV8/235-466          OS Cryptococcus neoformans var. grubii c45
#=GS A0A225ZYV8/235-466          DE DNA polymerase gamma 1
#=GS A0A225ZYV8/235-466          DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex; Cryptococcus neoformans; Cryptococcus neoformans var. grubii; 
#=GS A0A2N8UH24/155-178_220-422  AC A0A2N8UH24
#=GS A0A2N8UH24/155-178_220-422  OS Sporisorium reilianum f. sp. reilianum
#=GS A0A2N8UH24/155-178_220-422  DE Related to MIP1-DNA-directed DNA polymerase gamma catalytic subunit, mitochondrial
#=GS A0A2N8UH24/155-178_220-422  DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Sporisorium; Sporisorium reilianum; 
#=GS A0A127ZH83/164-187_229-432  AC A0A127ZH83
#=GS A0A127ZH83/164-187_229-432  OS Sporisorium scitamineum
#=GS A0A127ZH83/164-187_229-432  DE Related to MIP1-DNA-directed DNA polymerase gamma catalytic subunit, mitochondrial
#=GS A0A127ZH83/164-187_229-432  DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Sporisorium; Sporisorium scitamineum; 
#=GF SQ 19
A0A0D1CMM9/168-191_230-432          DLAEHFWNIGRDVAQPWLGMAFRLLRTPGHLKPVSWSIE-PGWTKYPILRSEDGLAQALGPGVSVPYPDKQDDMLV-FDVETMVQEGPFPVMATAASPNAWYSWLSPWLLQRGQNH--------------ERKDHLIPLGPSGLHDPARLVVGHNVSYDRARTLEEYTLDLGSTRWLDTMSLHVATRGISSPQRPAWIKHNKAKAEKRAKKLLEQAALKEETRRAIENALSGLEYDSDQLEGL-----------
A0A0D0Y0S6/234-457                  NIRDHFHALGRYTAEPYASMARTFTATRLPAKPDRWEMERPGWTKY----YSDGRMEPV--------DDLGDETLVSFDVEVLYKLSRFPVMATAVTPNAWYSWLSPVIFQPPPAEIPEPPPPWEASTLTCHPHELIPL-FNNKSSIPRIVIGHNVGYDRARVKEEYSLERTQTRWLDTLSLHVSTRGITSVQRPAWMAYRK---NKKAKKLREQENL------SILQEMAENSGDGAIMESLQEF--------
A0A0F7S003/164-187_229-432          DLAEHFWSIAREVAQPWLGMAFRLLRTPGHLKPVTWSIE-PGWTKYPILRSDDGLAAALGPGEAVPYPDKDDDMLV-FDVETMVQESPFPVMATAAGPNAWYSWLSPWLLQRGQDH--------------ERKHHLIPLGPSGPHDRARLVVGHNVSYDRARTLEEYTLDLGSTRWLDTMSLHVATRGISSPQRPAWMKHNKAKAEKRAKKLLEQAALKEETRRAIENALSGLEYDSDQLEGLK----------
A0A077QWW3/164-187_226-430          DLAQHFWNLGRQVAQPWLGFANRLLRTPGHLKPVTWTIE-PGWTKYPILRSEDGSAAALGPGISVPYPDKEDDMLV-FDVETMVQEGPFPVMATAAGANAWYSWLSPWLLQRGQGS--------------ERKDHLIPLGPSGKHDRARLIVGHNVSYDRARTLEEYTLDLGSTRWLDTMSLHVATRGISSPQRPAWMKHNKAKAEKRAKKLLEQAALKEETRRAIENALSGLEYDSDQLEGLKL---------
Q55X23/235-463                      NIRDHFHALGQYTAEPHASMARKFAATRLPAKPDRWEMGRSGWTKY----YSDGRMEAV--------DDLGDETLVSFDVEVLYKLSRFPVMATAVTPNAWYSWLSPVIFQSPPAEIPEPPPPWEASTPTYHPHELIPL-FNNKSSIPRIVIGHNVGYDRARVKEEYSLERTQTRWLDTLSLHVSTRGITSVQRPAWMAYKK---NKKAKKLREQENL------SILQEMAEKSGDDTIMDSLQEFGAASE---
I2FPZ7/165-188_229-431              DLAEHFWSLGRQVAQPWLGMAFRLLRTPGHLKPVNWSIE-PGWTKYSILRSEDGSASALGPGVSVPYPDKEDDMLV-FDVETMVQEGPFPVMATAAGAKAWYSWLSPWLVQRG-DY--------------HCKNHLIPLGPSGKHDRARLVVGHNVSYDRARTLEEYTLDLGSTRWLDTMSLHVATRGISSPQRPAWMKHNKAKAEKRAKKLLDQAALKEETRRAIENALSGLEYDSDQLEGLK----------
E6ZN15/156-179_221-424              DLAEHFWSIGREVAQPWLGMAFRLLRTPGHLKPVTWSIE-PGWTKYPILRSEDGSAAALGPGVAVAYPDKDDDMLV-FDVETMVQEGPFPVMATAAGPNAWYSWLSPWLLQRGKDH--------------ERKDHLIPLGPSGPNDRARLVVGHNVSYDRARTLEEYTLDLGSTRWLDTMSLHVATRGISSPQRPAWMKHNKAKAEKRAKKLLEQAALKEETRRAIENALSGLEYDSDQLEGLK----------
A0A1K0GA60/165-188_229-431          DLAEHFWSLGRQVAQPWLGMAFRLLRTPGHLKPVNWSIE-PGWTKYSILRSEDGSASALGPGVSVPYPDKEDDMLV-FDVETMVQEGPFPVMATAAGAKAWYSWLSPWLIQRG-DY--------------HCKNHLIPLGPSGKHDRARLVVGHNVSYDRARTLEEYTLDLGSTRWLDTMSLHVATRGISSPQRPAWMKHNKAKAEKRAKKLLDQAALKEETRRAIENALSGLEYDSDQLEGLK----------
A0A0L6DG71/234-457                  NIRDHFHALGRYTAEPYASMARTFAATTLPAKPDKWEMELPGWTKY----YSDGRMEAV--------DDLGDETLVSFDVEVLYKLSRFPVMATAVTPNAWYSWLSPVIFQPPPAEIPEPPPPWEASTLTCHPHELIPL-FNNKSSRPRIVIGHNVGYDRARVKEEYSLERTQTRWLDTLSLHVSTRGITSVQRPAWMAYRK---NKKAKKLREQENL------SILQEMAEKSGDGAIMESLQEF--------
A0A0D0TEZ9/234-460                  NIRDHFHALGRYTAEPYASMARTFAATKLPAKPDRWEMERPGWTKY----YSDGRMEAV--------DDLGDETLVSFDAEVLYKLSRFPVMATAVTPNAWYSWLSPVIFQPPPAEIPEPPPPWEASTLTCHPHELIPL-FNNKSSIPRIVIGHNVGYDRARVKEEYSLERTQTRWLDTLSLHVSTRGITSVQRPAWMAYRK---NKKAKKLREQENL------SILQEMAEKSGDGAIMESLQEFGAA-----
A0A0D0XCS7/233-461                  NVRDHFHALGRYTAEPYASMAKTFAATKLPGKPDRWEMERPGWTKY----YSDGRMEAV--------DDLGDETLVSFDVEVLYKLSRFPVMATAVTPNAWYSWLSPVIFQPPPAEIPESPPPWEASTLTCHPHELIPL-FNSKSSIPRIVIGHNVGYDRARVKEEYSLERTQTRWLDTLSLHVSTRGITSVQRPAWMAYRK---NKKAKKLREQENL------SILQEMAEKSGDRAIMESLQEFGAASE---
J9VFB3/235-458                      NIRDHFHTLGQYTAEPYASMAREFAATKLPAKPDRWEMGRPGWTKY----YSDGRMEAV--------DDLGDETLVSFDVEVLYKLSRFPVMATAVTPNAWYSWLSPVIFQSPPAEIPKPLPPWEASIPIYHPNELIPL-FNNESSIPRIVIGHNVGYDRARVKEEYSIERTQTRWLDTLSLHVSTRGITSVQRPAWMAYRK---NKKAKKLREQENL------SILQEMAEKSGDGTIMESLQEF--------
E6R1G6/234-457                      NIRDHFHALGRYTAEPYASMARTFTATRLPAKPDRWEMERPGWTKY----YSDGRMEPV--------DDLGDETLVSFDVEVLYKLSRFPVMATAVTPNAWYSWLSPVIFQPPPAEIPEPPPPWEASTLTCHPHELIPL-FNNKSSIPRIVIGHNVGYDRARVKEEYSLERTQTRWLDTLSLHVSTRGITSVQRPAWMAYRK---NKKAKKLREQENL------SILQEMAENSGDGAIMESLQEF--------
Q5KMW1/235-463                      NIRDHFHALGQYTAEPHASMARKFAATRLPAKPDRWEMGRSGWTKY----YSDGRMEAV--------DDLGDETLVSFDVEVLYKLSRFPVMATAVTPNAWYSWLSPVIFQSPPAEIPEPPPPWEASTPTYHPHELIPL-FNNKSSIPRIVIGHNVGYDRARVKEEYSLERTQTRWLDTLSLHVSTRGITSVQRPAWMAYKK---NKKAKKLREQENL------SILQEMAEKSGDDTIMDSLQEFGAASE---
A0A0D0UXU5/234-457                  NIRDHFHALGRYTAEPYASMARTFAATTLPAKPDKWEMELPGWTKY----YSDGRMEAV--------DDLGDETLVSFDVEVLYKLSRFPVMATAVTPNAWYSWLSPVIFQPPPAEIPEPPPPWEASTLTCHPHELIPL-FNNKSSRPRIVIGHNVGYDRARVKEEYSLERTQTRWLDTLSLHVSTRGITSVQRPAWMAYRK---NKKAKKLREQENL------SILQEMAEKSGDGAIMESLQEF--------
A0A226BND5/235-462                  NIRDHFHTLGQYTAEPYASMAREFAATKLPAKPDRWEMGRPGWTKY----YPDGRMEAV--------DDLGDETLVSFDVEVLYKLTRFPVMATAVTPNAWYSWLSPVIFQSPPAEIPKPLPPWEASTPIYHPNELIPL-FKNESSIPRIVIGHNVGYDRARVKEEYSIERTQTRWLDTLSLHVSTRGITSVQRPAWMAYRK---NKKAKKLREQENL------SILQEMAEKSDDGTIMESLQEFGAAS----
A0A225ZYV8/235-466                  NIRDHFHTLGQYTAEPYASMAREFAATKLPAKPDRWEMGRPGWTKY----YSDGRMEAV--------DDLGDETLVSFDVEVLYKLSRFPVMATAVTPNAWYSWLSPVIFQSPPAEIPKPLPPWEASTPIYHPHELIPL-FNNESSIPRIVIGHNVGYDRARVKEEYSLERTQTRWLDTLSLHVSTRGITSVQRPAWMAYRK---NKKAKKLREQENL------SILQEMAEKSGDGTIMESLQEFGAASETEE
A0A2N8UH24/155-178_220-422          DLAEHFWSIGREVAQPWLGMAFRLLRTPGHLKPVTWSIE-PGWTRYPILRSDDGSAAVLGPGVAVAYPDKDDDMLV-FDVETMVQEGPFPVMATAAGPNAWYSWLSPWLLQRGQDH--------------ERKDHLIPLGPSGPNDRARLVVGHNVSYDRARTLEEYTLDLGSTRWLDTMSLHVATRGISSPQRPAWMKHNKAKAEKRAKKLLEQAALKEETRRAIENALSGLEYDSDQLEGL-----------
A0A127ZH83/164-187_229-432          DLAEHFWSIAREVAQPWLGMAFRLLRTPGHLKPVTWSIE-PGWTKYPILRSDDGLAAALGPGEAVPYPDKDDDMLV-FDVETMVQESPFPVMATAAGPNAWYSWLSPWLLQRGQDH--------------ERKHHLIPLGPSGPHDRARLVVGHNVSYDRARTLEEYTLDLGSTRWLDTMSLHVATRGISSPQRPAWMKHNKAKAEKRAKKLLEQAALKEETRRAIENALSGLEYDSDQLEGLK----------
#=GC scorecons                      66569945677459695568944655944559944956618999891111549945476111111115945975992998956464659999999657799999999465945454221212222222113555599991555455469687999969999954999687455999999699996999969599999857591116979999489559111111694556664549544686942200000000
#=GC scorecons_70                   **_***__***__***___**__*__*____**__*_**_******______**___**_________*__**_**_****_*_*___*******__**********_*_*________________________****_________********_*****__***_**___***********_****_*_******_*_*____******_**__*_______*___*_____*___**_*___________
#=GC scorecons_80                   ____**___*___*_*___**_____*____**__*____******______**___*__________*__*__**_****_______*******__**********___*________________________****_________*_*_****_*****__***_*____******_****_****_*_******___*____*_****_**__*_______*_________*____*_*___________
#=GC scorecons_90                   ____**_______*_*___**_____*____**__*_____*****______**______________*__*__**_****_______*******____********___*________________________****_________*_*_****_*****__***_*____******_****_****_*_******___*____*_****_**__*_______*_________*____*_*___________
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