# STOCKHOLM 1.0
#=GF ID 3.30.420.10/FF/000098
#=GF DE Polynucleotidyl transferase ribonuclease H-like superfamily protein
#=GF AC 3.30.420.10/FF/000098
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 49.324
#=GS Q5W6Y1/373-552      AC Q5W6Y1
#=GS Q5W6Y1/373-552      OS Oryza sativa Japonica Group
#=GS Q5W6Y1/373-552      DE Os05g0357100 protein
#=GS Q5W6Y1/373-552      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; 
#=GS D7UA07/354-531      AC D7UA07
#=GS D7UA07/354-531      OS Vitis vinifera
#=GS D7UA07/354-531      DE Uncharacterized protein
#=GS D7UA07/354-531      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Vitales; Vitaceae; Viteae; Vitis; Vitis vinifera; 
#=GS A0A2S3HD96/350-529  AC A0A2S3HD96
#=GS A0A2S3HD96/350-529  OS Panicum hallii
#=GS A0A2S3HD96/350-529  DE Uncharacterized protein
#=GS A0A2S3HD96/350-529  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Paniceae; Panicinae; Panicum; Panicum sect. Panicum; Panicum hallii; 
#=GS I1HKA5/314-495      AC I1HKA5
#=GS I1HKA5/314-495      OS Brachypodium distachyon
#=GS I1HKA5/314-495      DE Uncharacterized protein
#=GS I1HKA5/314-495      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Brachypodieae; Brachypodium; Brachypodium distachyon; 
#=GS A0A1D6FNL8/351-539  AC A0A1D6FNL8
#=GS A0A1D6FNL8/351-539  OS Zea mays
#=GS A0A1D6FNL8/351-539  DE Polynucleotidyl transferase ribonuclease H-like superfamily protein
#=GS A0A1D6FNL8/351-539  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS A0A287FTM1/352-535  AC A0A287FTM1
#=GS A0A287FTM1/352-535  OS Hordeum vulgare subsp. vulgare
#=GS A0A287FTM1/352-535  DE Uncharacterized protein
#=GS A0A287FTM1/352-535  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Triticeae; Hordeinae; Hordeum; Hordeum vulgare; Hordeum vulgare subsp. vulgare; 
#=GS C5YWP4/350-538      AC C5YWP4
#=GS C5YWP4/350-538      OS Sorghum bicolor
#=GS C5YWP4/350-538      DE Uncharacterized protein
#=GS C5YWP4/350-538      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Sorghinae; Sorghum; Sorghum bicolor; 
#=GS A0A3B5YZB2/352-535  AC A0A3B5YZB2
#=GS A0A3B5YZB2/352-535  OS Triticum aestivum
#=GS A0A3B5YZB2/352-535  DE Uncharacterized protein
#=GS A0A3B5YZB2/352-535  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Triticeae; Triticinae; Triticum; Triticum aestivum; 
#=GS A0A0D9WFI2/424-604  AC A0A0D9WFI2
#=GS A0A0D9WFI2/424-604  OS Leersia perrieri
#=GS A0A0D9WFI2/424-604  DE Uncharacterized protein
#=GS A0A0D9WFI2/424-604  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Leersia; Leersia perrieri; 
#=GS A0A452YXE7/87-270   AC A0A452YXE7
#=GS A0A452YXE7/87-270   OS Aegilops tauschii subsp. strangulata
#=GS A0A452YXE7/87-270   DE Uncharacterized protein
#=GS A0A452YXE7/87-270   DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Triticeae; Triticinae; Aegilops; Aegilops tauschii; Aegilops tauschii subsp. strangulata; 
#=GS I1PUS4/373-552      AC I1PUS4
#=GS I1PUS4/373-552      OS Oryza glaberrima
#=GS I1PUS4/373-552      DE Uncharacterized protein
#=GS I1PUS4/373-552      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza glaberrima; 
#=GS J3M691/354-534      AC J3M691
#=GS J3M691/354-534      OS Oryza brachyantha
#=GS J3M691/354-534      DE Uncharacterized protein
#=GS J3M691/354-534      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza brachyantha; 
#=GS A0A2T7EF25/350-529  AC A0A2T7EF25
#=GS A0A2T7EF25/350-529  OS Panicum hallii var. hallii
#=GS A0A2T7EF25/350-529  DE Uncharacterized protein
#=GS A0A2T7EF25/350-529  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Paniceae; Panicinae; Panicum; Panicum sect. Panicum; Panicum hallii; Panicum hallii var. hallii; 
#=GS I1HKA6/269-450      AC I1HKA6
#=GS I1HKA6/269-450      OS Brachypodium distachyon
#=GS I1HKA6/269-450      DE Uncharacterized protein
#=GS I1HKA6/269-450      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Brachypodieae; Brachypodium; Brachypodium distachyon; 
#=GS I1HKA4/353-534      AC I1HKA4
#=GS I1HKA4/353-534      OS Brachypodium distachyon
#=GS I1HKA4/353-534      DE Uncharacterized protein
#=GS I1HKA4/353-534      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Brachypodieae; Brachypodium; Brachypodium distachyon; 
#=GS A0A3B5Y0I5/350-535  AC A0A3B5Y0I5
#=GS A0A3B5Y0I5/350-535  OS Triticum aestivum
#=GS A0A3B5Y0I5/350-535  DE Uncharacterized protein
#=GS A0A3B5Y0I5/350-535  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Triticeae; Triticinae; Triticum; Triticum aestivum; 
#=GS A0A452YXB6/379-562  AC A0A452YXB6
#=GS A0A452YXB6/379-562  OS Aegilops tauschii subsp. strangulata
#=GS A0A452YXB6/379-562  DE Uncharacterized protein
#=GS A0A452YXB6/379-562  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Triticeae; Triticinae; Aegilops; Aegilops tauschii; Aegilops tauschii subsp. strangulata; 
#=GS A0A452YXC2/352-535  AC A0A452YXC2
#=GS A0A452YXC2/352-535  OS Aegilops tauschii subsp. strangulata
#=GS A0A452YXC2/352-535  DE Uncharacterized protein
#=GS A0A452YXC2/352-535  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Triticeae; Triticinae; Aegilops; Aegilops tauschii; Aegilops tauschii subsp. strangulata; 
#=GS A0A0D9WFI3/424-604  AC A0A0D9WFI3
#=GS A0A0D9WFI3/424-604  OS Leersia perrieri
#=GS A0A0D9WFI3/424-604  DE Uncharacterized protein
#=GS A0A0D9WFI3/424-604  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Leersia; Leersia perrieri; 
#=GS A0A3B5ZVE5/352-535  AC A0A3B5ZVE5
#=GS A0A3B5ZVE5/352-535  OS Triticum aestivum
#=GS A0A3B5ZVE5/352-535  DE Uncharacterized protein
#=GS A0A3B5ZVE5/352-535  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Triticeae; Triticinae; Triticum; Triticum aestivum; 
#=GS B8AX36/373-552      AC B8AX36
#=GS B8AX36/373-552      OS Oryza sativa Indica Group
#=GS B8AX36/373-552      DE Uncharacterized protein
#=GS B8AX36/373-552      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; 
#=GF SQ 21
Q5W6Y1/373-552              -----DIIWVDEIDGLLNSISYIEACKIIGVDCEWKPNFEKGSKPNKVSIIQIASDKKAFIFDLIKLYEDDPKVLDSCFRRIMCSSNILKLGYNLQCDLHQLSQSYGELKCFQSYEMLLDIQKLFKGTTGGLSGLSKKILGAGLNKTRRNSNWEQRPLTQNQKEYAALDAVVLVHIFH-HVKGQPQ----
D7UA07/354-531              ----EGIIWVDEVNGLHNASCYIEGCKVLGIDCEWKPNYEKGSKPNKVSILQVASEKRAFIFDLIKLATDVPDVLDNCLISILHSSRILKLGYNFQCDVNQLTQSYGELKCFKHFEMLLDIQNMFKEPRGGLSGLAKKVLGAGLNKTRRNSNWEQRPLSQHQLEYAALDAAVLVHIFS---KGSP-----
A0A2S3HD96/350-529          -LDVQEIVWVDEINGLLNATSCIEACKIIGMDCEWRPNFEKNSKPSKVSIIQIASDKIAFIFDLIKLYEDDPKVLDSCFRRIMCSSNILKLGFDIQCDLHQLAQSYGELECFQSYKMLLDMQKLFKGVTGGLSGLSKEILGAGLNKTRRNSNWEQRPLSQKQKEYAALDAVVLVHIFHEHI---------
I1HKA5/314-495              ---LEEIVWVDEIEGLLNATSYIEACKIIGVDCEWKPNFEKGSRPNKVSIIQIASDKKAFIFDLIKLYEDDPKALDCCFRRIMCSSNLLKLGYNLQCDLHQLSQSYGELQCFQSYEMLLDIQKLFKETTGGLSGLSKKILGAGLNKTRRNSNWEKRPLSQNQKEYAALDAVVLVHIFH-HVRGQPQ----
A0A1D6FNL8/351-539          -LDVEEIVWVDEINGLLNATSDIEACKIIGMDCEWRPNFEKNTKSSKVSIIQIASDKIAFIFDLIKLYEDDPKALDSCLRRVMCSSKILKLGYDIQCDLHQLTRSYGELECFQSYEMVLDMQKLFKGVTGGLSGLSKEILGAGLNKTRRNSNWEQRPLTQNQKEYAALDAVVLVHIFHEHMRRQAQFGVS
A0A287FTM1/352-535          --ILEEIVWVDEVKGLLSATSYIEACKIIGVDCEWKPNYEKGSRPNKVAIIQIASDKKAFIFDLIKLYEDDPKALDCCFRRIMCSSNILKLGYNLQCDLHQLTQSYGELLCFQSYEMLLDIQKLFKETTGGLSGLSKKILGAGLNKTRRNSDWEQRPLSQNQKEYAALDAAVLVHIFH-HVRGQPQF---
C5YWP4/350-538              -LDVEEIVWVDEINGLLSATSNIEACKIIGMDCEWRPNFEKNTKPSKVSIIQIASDKVAFIFDLIKLYEDDPKTLDSCLRRIMCSSKILKLGYDIQCDLHQLTQSYGELDCFQSYEMLLDMQKLFKGVTGGLSGLSKEILGAGLNKSRRNSNWEQRPLTQNQKEYAALDAVVLVHIFHEHMRRQAQFGVS
A0A3B5YZB2/352-535          --ILEEIVWVDEINGLLSATTYIEACKIIGVDCEWKPNYEKGSRPNKVAIIQIASDKKAFIFDLIKLYEDDPKALDCCFRRIMCSSNILKLGYNLQCDLHQLSQSYGELLCFQSYEMLLDIQKLFKETTGGLSGLSKKILGAGLNKTRRNSDWEQRPLSQNQKEYAALDAAVLVHIFH-HVRGQPQF---
A0A0D9WFI2/424-604          ----EDIIWVDEINGLLNAISYIEACKIIGVDCEWKPNFEKGSKPNKVSIIQIASDKKAFIFDLIKLYEDDPKVLDSCFRRIMCSSNILKLGYNLQCDLHQLSQSYGELKCFQCYEMLLDIQKLFKGATGGLSGLSKKILGAGLNKTRRNSNWEQRPLTQNQKEYAALDAVVLVHIFH-HVKGQPQ----
A0A452YXE7/87-270           --ILEEIVWVDEINGLLSATSYIEACKIIGVDCEWKPNYEKGSRPNKVAIIQIASDKKAFIFDLIKLYEDDPKALDCCFRRIMCSSNILKLGYNLQCDLHQLSQSYGELICFQSYEMLLDIQKLFKETTGGLSGLSKKILGAGLNKTRRNSDWEQRPLSQNQKEYAALDAAVLVHIFH-HVRGQPQF---
I1PUS4/373-552              -----DIIWVDEIDGLLNSISYIEACKIIGVDCEWKPNFEKGSKPNKVSIIQIASDKKAFIFDLIKLYEDDPKVLDSCFRRIMCSSNILKLGYNLQCDLHQLSQSYGELKCFQSYEMLLDIQKLFKGTTGGLSGLSKKILGAGLNKTRRNSNWEQRPLTQNQKEYAALDAVVLVHIFH-HVKGQPQ----
J3M691/354-534              ----EDIIWVDEINGLLNAISYIEDCKIIGVDCEWKPNFEKGSKPNKVSIIQIASDKKAFIFDLIKLYEDDPKVLDSCFRRIMCSSNILKLGYNLQCDLHQLSQSYGELKCFQSYEMLLDIQKLFKGATGGLSGLSKKILGAGLNKTRRNSNWEQRPLTQNQKEYAALDAVVLVHIFQ-HVKGQPQ----
A0A2T7EF25/350-529          -LDVQEIVWVDEINGLLNATSCIEACKIIGMDCEWRPNFEKNSKPSKVSIIQIASDKIAFIFDLIKLYEDDPKVLDSCFRRIMCSSNILKLGFDIQCDLHQLAQSYGELECFQSYEMLLDMQKLFKGVTGGLSGLSKEILGAGLNKTRRNSNWEQRPLSQKQKEYAALDAVVLVHIFHEHI---------
I1HKA6/269-450              ---LEEIVWVDEIEGLLNATSYIEACKIIGVDCEWKPNFEKGSRPNKVSIIQIASDKKAFIFDLIKLYEDDPKALDCCFRRIMCSSNLLKLGYNLQCDLHQLSQSYGELQCFQSYEMLLDIQKLFKETTGGLSGLSKKILGAGLNKTRRNSNWEKRPLSQNQKEYAALDAVVLVHIFH-HVRGQPQ----
I1HKA4/353-534              ---LEEIVWVDEIEGLLNATSYIEACKIIGVDCEWKPNFEKGSRPNKVSIIQIASDKKAFIFDLIKLYEDDPKALDCCFRRIMCSSNLLKLGYNLQCDLHQLSQSYGELQCFQSYEMLLDIQKLFKETTGGLSGLSKKILGAGLNKTRRNSNWEKRPLSQNQKEYAALDAVVLVHIFH-HVRGQPQ----
A0A3B5Y0I5/350-535          KLILEEIVWVDEINELLSATSYIEACKIIGVDCEWKPNYEKGSRPNKVAIIQIASDKKAFIFDLIKLYEDDPKALDCCFRRIMCSSNILKLGYNLQCDLHQLSQSYGELLCFQSYEMLLDIQKLFKETTGGLSGLSKKILGAGLNKTRRNSDWEQRPLSQNQKEYAALDAAVLVHIFH-HVRGQPQF---
A0A452YXB6/379-562          --ILEEIVWVDEINGLLSATSYIEACKIIGVDCEWKPNYEKGSRPNKVAIIQIASDKKAFIFDLIKLYEDDPKALDCCFRRIMCSSNILKLGYNLQCDLHQLSQSYGELICFQSYEMLLDIQKLFKETTGGLSGLSKKILGAGLNKTRRNSDWEQRPLSQNQKEYAALDAAVLVHIFH-HVRGQPQF---
A0A452YXC2/352-535          --ILEEIVWVDEINGLLSATSYIEACKIIGVDCEWKPNYEKGSRPNKVAIIQIASDKKAFIFDLIKLYEDDPKALDCCFRRIMCSSNILKLGYNLQCDLHQLSQSYGELICFQSYEMLLDIQKLFKETTGGLSGLSKKILGAGLNKTRRNSDWEQRPLSQNQKEYAALDAAVLVHIFH-HVRGQPQF---
A0A0D9WFI3/424-604          ----EDIIWVDEINGLLNAISYIEACKIIGVDCEWKPNFEKGSKPNKVSIIQIASDKKAFIFDLIKLYEDDPKVLDSCFRRIMCSSNILKLGYNLQCDLHQLSQSYGELKCFQCYEMLLDIQKLFKGATGGLSGLSKKILGAGLNKTRRNSNWEQRPLTQNQKEYAALDAVVLVHIFH-HVKGQPQ----
A0A3B5ZVE5/352-535          --ILEEIVWVDEINGLLSATSYIEACKIIGVDCEWKPNYEKGSRPNKVAIIQIASDKKAFIFDLIKLYEDDPKALDCCFRRIMCSSNILKLGYNLQCDLHQLSQSYGELICFQSYEMLLDIQKLFKETTGGLSGLSKKILGAGLNKTRRNSDWEQRPLSQNQKEYAALDAAVLVHIFH-HVRGQPQF---
B8AX36/373-552              -----DIIWVDEIDGLLNSISYIEACKIIGVDCEWKPNFEKGSKPNKVSIIQIASDKKAFIFDLIKLYEDDPKVLDSCFRRIMCSSNILKLGYNLQCDLHQLSQSYGELKCFQSYEMLLDIQKLFKGTTGGLSGLSKKILGAGLNKTRRNSNWEQRPLTQNQKEYAALDAVVLVHIFH-HVKGQPQ----
#=GC scorecons              0012569799998689767676997998896999979979967786996989899895999999999779797599597778879968999986699987995899999399868898997978996579999997968999999989999799899969697999999969999997075555551000
#=GC scorecons_70           _____**************_*_***********************************_***************_**_*****************_*******_******_****************__**************************************************_*__________
#=GC scorecons_80           ______*******_***_*_*_********_**********_***_**_********_***************_**_*_*******_******__*******_******_***_************__*********_*************_******_*_*********_*******____________
#=GC scorecons_90           ______*_****__**______**_***_*_****_**_**___*_**_*_******_*********__*_*__**_*___**_**__*****__***__**_******_**__******_*_***___******_*_*************_**_***_*_*_*******_******_____________
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