# STOCKHOLM 1.0 #=GF ID 3.30.420.10/FF/000094 #=GF DE Gag-Pol polyprotein #=GF AC 3.30.420.10/FF/000094 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 29.642 #=GS P03355/1442-1639 AC P03355 #=GS P03355/1442-1639 OS Moloney murine leukemia virus isolate Shinnick #=GS P03355/1442-1639 DE Gag-Pol polyprotein #=GS P03355/1442-1639 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; #=GS P03355/1442-1639 DR GO; GO:0003677; GO:0006308; GO:0032993; GO:0044824; GO:0044826; #=GS P03355/1442-1639 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS P31795/289-489 AC P31795 #=GS P31795/289-489 OS Radiation murine leukemia virus (strain Kaplan) #=GS P31795/289-489 DE Pol polyprotein #=GS P31795/289-489 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; #=GS P31795/289-489 DR EC; 2.7.7.49; 3.1.26.4; #=GS A1Z651/1441-1641 AC A1Z651 #=GS A1Z651/1441-1641 OS Xenotropic MuLV-related virus VP62 #=GS A1Z651/1441-1641 DE Gag-Pol polyprotein #=GS A1Z651/1441-1641 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia-related retroviruses; #=GS A1Z651/1441-1641 DR GO; GO:0042802; #=GS A1Z651/1441-1641 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS Q8UN00/1442-1639 AC Q8UN00 #=GS Q8UN00/1442-1639 OS Moloney murine leukemia virus #=GS Q8UN00/1442-1639 DE Pr180 Gag-Pro-Pol polyprotein #=GS Q8UN00/1442-1639 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; #=GS Q8UN00/1442-1639 DR GO; GO:0005515; #=GS Q61530/113-313 AC Q61530 #=GS Q61530/113-313 OS Mus musculus #=GS Q61530/113-313 DE Integrase (409 AA) #=GS Q61530/113-313 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; #=GS A0A0P6CJ31/213-413 AC A0A0P6CJ31 #=GS A0A0P6CJ31/213-413 OS Daphnia magna #=GS A0A0P6CJ31/213-413 DE Pol protein #=GS A0A0P6CJ31/213-413 DR ORG; Eukaryota; Metazoa; Arthropoda; Crustacea; Branchiopoda; Phyllopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia; Daphnia magna; #=GS Q2F7J3/1441-1641 AC Q2F7J3 #=GS Q2F7J3/1441-1641 OS Xenotropic MuLV-related virus VP35 #=GS Q2F7J3/1441-1641 DE Gag-Pol polyprotein #=GS Q2F7J3/1441-1641 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia-related retroviruses; #=GS Q2F7J3/1441-1641 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS Q2F7J0/1441-1641 AC Q2F7J0 #=GS Q2F7J0/1441-1641 OS Xenotropic MuLV-related virus VP42 #=GS Q2F7J0/1441-1641 DE Gag-Pol polyprotein #=GS Q2F7J0/1441-1641 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia-related retroviruses; #=GS Q2F7J0/1441-1641 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS P03356/1442-1642 AC P03356 #=GS P03356/1442-1642 OS AKR (endogenous) murine leukemia virus #=GS P03356/1442-1642 DE Gag-Pol polyprotein #=GS P03356/1442-1642 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; #=GS P03356/1442-1642 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS Q7SVK7/1442-1642 AC Q7SVK7 #=GS Q7SVK7/1442-1642 OS Murine leukemia virus (strain BM5 ECO) #=GS Q7SVK7/1442-1642 DE Gag-pol polyprotein #=GS Q7SVK7/1442-1642 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; #=GS Q7SVK7/1442-1642 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS P08361/1440-1637 AC P08361 #=GS P08361/1440-1637 OS Cas-Br-E murine leukemia virus #=GS P08361/1440-1637 DE Gag-Pol polyprotein #=GS P08361/1440-1637 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; #=GS P08361/1440-1637 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS P26810/1443-1640 AC P26810 #=GS P26810/1443-1640 OS Friend murine leukemia virus (ISOLATE 57) #=GS P26810/1443-1640 DE Gag-Pol polyprotein #=GS P26810/1443-1640 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; #=GS P26810/1443-1640 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS P11227/1442-1642 AC P11227 #=GS P11227/1442-1642 OS Radiation murine leukemia virus #=GS P11227/1442-1642 DE Gag-Pol polyprotein #=GS P11227/1442-1642 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; #=GS P11227/1442-1642 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS D0UFA3/1441-1641 AC D0UFA3 #=GS D0UFA3/1441-1641 OS Xenotropic MuLV-related virus #=GS D0UFA3/1441-1641 DE Putative gag-pro-pol polyprotein #=GS D0UFA3/1441-1641 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia-related retroviruses; #=GS D0UFA3/1441-1641 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS P26808/1442-1639 AC P26808 #=GS P26808/1442-1639 OS Friend murine leukemia virus (ISOLATE PVC-211) #=GS P26808/1442-1639 DE Gag-Pol polyprotein #=GS P26808/1442-1639 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; #=GS P26808/1442-1639 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS P26809/1442-1639 AC P26809 #=GS P26809/1442-1639 OS Friend murine leukemia virus (ISOLATE FB29) #=GS P26809/1442-1639 DE Gag-Pol polyprotein #=GS P26809/1442-1639 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; #=GS P26809/1442-1639 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS Q9E7M1/1440-1641 AC Q9E7M1 #=GS Q9E7M1/1440-1641 OS DG-75 Murine leukemia virus #=GS Q9E7M1/1440-1641 DE Putative gag-pro-pol polyprotein #=GS Q9E7M1/1440-1641 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; #=GS A0A126QCH6/1444-1645 AC A0A126QCH6 #=GS A0A126QCH6/1444-1645 OS Murine leukemia virus #=GS A0A126QCH6/1444-1645 DE Putative gag-pro-pol polyprotein #=GS A0A126QCH6/1444-1645 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; #=GS Q5PYI3/1438-1638 AC Q5PYI3 #=GS Q5PYI3/1438-1638 OS Murine leukemia virus #=GS Q5PYI3/1438-1638 DE Gag-pol polyprotein #=GS Q5PYI3/1438-1638 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; #=GS Q9E007/413-614 AC Q9E007 #=GS Q9E007/413-614 OS Murine leukemia virus #=GS Q9E007/413-614 DE Polyprotein #=GS Q9E007/413-614 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; #=GS Q90RL4/904-1104 AC Q90RL4 #=GS Q90RL4/904-1104 OS Murine leukemia virus #=GS Q90RL4/904-1104 DE Pol protein #=GS Q90RL4/904-1104 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; #=GS Q60FS6/903-1100 AC Q60FS6 #=GS Q60FS6/903-1100 OS Murine leukemia virus #=GS Q60FS6/903-1100 DE POL polyprotein #=GS Q60FS6/903-1100 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; #=GS D0UFA9/93-293 AC D0UFA9 #=GS D0UFA9/93-293 OS Xenotropic MuLV-related virus #=GS D0UFA9/93-293 DE Putative gag polyprotein #=GS D0UFA9/93-293 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia-related retroviruses; #=GS T2AUF0/574-774 AC T2AUF0 #=GS T2AUF0/574-774 OS PreXMRV-1/PreXMRV-2 recombinant #=GS T2AUF0/574-774 DE Gag-pro-pol polyprotein #=GS T2AUF0/574-774 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia-related retroviruses; #=GF SQ 24 P03355/1442-1639 RVRGHRPGTHWEIDFTEIKPGLYGYKYLLVFIDTFSGWIEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVSQTVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRARNTPGPHGLTPYEILYGAPPPLVNFPDPDMTRVTNSPSLQAHLQALYLVQHEVWRP---- P31795/289-489 -VRGHRPGTHWEIDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKHETAKIVTKKLLEEIFPRFGMPQVLGTDNGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGTRDWVLLLPLALYRARNTPGPHGLTPYEILYGAPPPLVNFHDPEMSKFTNSPSLQAHLQALQAVQREVWKPLAAA A1Z651/1441-1641 -VRGHRPGTHWEVDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKRETAKVVSKKLLEDIFPRFGMPQVLGSDNGPAFASQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLASGTRDWVLLLPLALYRARNTPGPHGLTPYEILYGAPPPLVNFHDPEMSKLTNSPSLQAHLQALQAVQQEVWKPLAAA Q8UN00/1442-1639 RVRGHRPGTYWEIDFTEIKPGLYGYKYLLVFIDTFSGWIEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVSQTVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRARNTPGPHGLTPYEILYGAPPPLVNFPDPDMTRVTNSPSLQAHLQALYLVQHEVWRP---- Q61530/113-313 -VRGHRPGTHWEIDFTEVRPGLYGHKYLLVFVDTFSGWVEAFPTKHETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGTRDWVLLLPLALYRARNTPGPHGLTPYEILYGAPPPLVNFHDPEMSKFTNSPSLQAHLQALQAVQREVWKPLAAA A0A0P6CJ31/213-413 -VRGHRPGTHREIDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKRETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFISQVSQTVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLAAGTRDWVLLLPLALYRARNTPGPHGLTPYEILYGAPPPLVNFHDPEMSKLTNSPSLQAHLQALQAVQREVWKPLAAA Q2F7J3/1441-1641 -VRGHRPGTHWEVDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKRETAKVVTKKLLEDIFPRFGMPQVLGSDNGPAFASQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLASGTRDWVLLLPLALYRARNTPGPHGLTPYEILYGAPPPLVNFHDPEMSKLTNSPSLQAHLQALQAVQQEVWKPLAAA Q2F7J0/1441-1641 -VRGHRPGTHWEVDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKRETAKVVSKKLLEDIFPRFGMPQVLGSDNGPAFASQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLASGTRDWVLLLPLALYRARNTPGPHGLTPYEILYGAPPPLVNFHDPEMSKLTNSPSLQAHLQALQAVQQEVWKPLAAA P03356/1442-1642 -VRGHRPGSHWEIDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKRETARVVSKKLLEEIFPRFGMPQVLGSDNGPAFTSQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLAAGTRDWVLLLPLALYRARNTPGPHGLTPYEILYGAPPPLVNFHDPDMSELTNSPSLQAHLQALQTVQREIWKPLAEA Q7SVK7/1442-1642 -VRGHRPGTHWEIDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKRETARVVSKKLLEEIFPRFGMPQVLGSDNGPAFTSQVSQSVADLLGIDWKLHCAYRPQSSGQVERINRTIKETLTKLTLAAGTRDWVLLLPLALYRARNTPGPHGLTPYEILYGAPPPLVNFHDPDMSELTNSPSLQAHLQALQTVQREIWKPLAEA P08361/1440-1637 RVRGHRPGTHWEIDFTEVKPGLYGYKYLLVFVDTFSGWIEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVSQTVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRARNTPGPHGLTPYEILYGAPPPLVNFPDPDMTRVTNSPSLQAHLQALYLVQHEVWRP---- P26810/1443-1640 RVRGHRPGTHWEIDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRARNTPGPHGLTPYEILYGAPPPLVNFPDPDMAKVTHNPSLQAHLQALYLVQHEVWRP---- P11227/1442-1642 -VRGHRPGTHWEIDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKHETAKIVTKKLLEEIFPRFGMPQVLGTDNGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGTRDWVLLLPLALYRARNTPGPHGLTPYEILYGAPPPLVNFHDPEMSKFTNSPSLQAHLQALQAVQREVWKPLAAA D0UFA3/1441-1641 -VRGHRPGTHWEVDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKRETAKVVSKKLLEDIFPRFGMPQVLGSDNGPAFASQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLASGTRDWVLLLPLALYRARNTPGPHGLTPYEILYGAPPPLVNFHDPEMSKLTNSPSLQAHLQALQAVQQEVWKPLAAA P26808/1442-1639 RVRGHRPGTHWEIDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRARNTPGPHGLTPYEILYGAPPPLVNFPDPDMAKVTHNPSLQAHLQALYLVQHEVWRP---- P26809/1442-1639 RVRGHRPGTHWEIDFTEVKPGLYGYKYLLVFIDTFSGWVEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRARNTPGPHGLTPYEILYGAPPPLVNFPDPDMAKVTHNPSLQAHLQALYLVQHEVWRP---- Q9E7M1/1440-1641 RIRGHRPGTHWEIDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKRETAKVVTKKLLEEIFPRFGMPQVLGSDNGPAFVSQVSHSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLAAGTRDWVLLLPLALYRARNTPGPHGLTPYEILYGAPPPLVNFHDPEMSKLTNSPSLQAHLQALQAVQREVWKPLAAA A0A126QCH6/1444-1645 RVRGHRPGTHWEVDFTEVQPGLYGYKYLLVFVDTFSGWVEAYPTKRETARVVTKKLLEEIFPRFGMPQVLGSDNGPAFVSQVSQMVANLLGIDWKLHCAYRPQSSGQVERMNRTIKETLIKLSLASGTRDWVLLLPLALYRARNTPGPHGLTPYEILYGAPPPLVNFHDPEMTKLSNSPSLQAHLQALQTVQQEVWKPLAAA Q5PYI3/1438-1638 -VRGHRPGTHWEIDFTEVKPGLYGYKYLLVLVDTFSGWVEAFPTKLETAKVVAKKLLEEIFPRYGMPQVLGSDNGPAFVSQVSQSVAKILGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGTRDWVLLLPLALYRARNTPGPHGLTPYEILYGAPPPLVNFHDPEMSKVANSPSLQAHLQALQAVQQEVWRPLAAA Q9E007/413-614 RVRGHRPGTHWEIDFTEVRPGLYGYKYLLVFVDTFSGWVEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVSQTVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGTRDWVLLLPLALYRARNTPGPHGLTPYEILYGAPPPLVNFHDPEMSKFTNSPSLQAHLQALQAVQREVWKPLAAA Q90RL4/904-1104 -VRGHRPGSHWEIDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKRETARVVSKKLLEEIFPRFGMPQVLGSDNGPAFTSQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLAAGTRDWVLLLPLALYRARNTPGPHGLTPYEILYGAPPPLVNFHDPDMSELTNSPSLQAHLQALQTVQREIWKPLAEA Q60FS6/903-1100 RVRGHRPGTHWEIDFTEVKPGLYGYKYLLVFVDTFSGWVEASPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVSQTVADLMGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRARNTPGPHGLTPYEILYGAPPPLVNFPDPDMTRVTNSPSLQAHLQALYLVQHEVWRP---- D0UFA9/93-293 -VRGHRPGTHWEVDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKRETAKVVSKKLLGDIFPRFGMPQVLGSDNGPAFASQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLASGTRGWVLLLPLALYRARNTPGPHGLTPYEILYGAPPPLVNFHDPEMSKLTNSPSLQAHLQALQAVQQEVWKPLAAA T2AUF0/574-774 -VRGHRPGTHWEVDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKRETAKVVSKKLLEDIFPRFGMPQVLGSDNGPAFASQVSQSVADLLGIDWKLHCAYRPQSSGQVEKMNRTIKETLTKLTLASGTRDWVLLLPLALYRARNTPGPHGLTPYEILYGAPPPLVNFHDPEMSKLTNSPSLQAHLQALQAVQQEVWKPLAAA #=GC scorecons 1899999988897999988999998999998899999989979996999789699998799998999999969999995969985997889899999999999999999889999999989989959698999999999999999999999999999999999999969979565877999999999955995989793323 #=GC scorecons_70 _********************************************_*************************_******_*****_****************************************_*****************************************_****_*_*************__**_*****____ #=GC scorecons_80 _********************************************_******_******************_******_*_***_**_*************************************_*_***************************************_**_*___*************__**_***_*____ #=GC scorecons_90 _***********_*****_************_******_**_***_***_**_*****_************_******_*_***_**_***_*********************************_*_***************************************_**_*______**********__**_***_*____ //