# STOCKHOLM 1.0 #=GF ID 3.30.420.10/FF/000184 #=GF DE Gag-Pol polyprotein #=GF AC 3.30.420.10/FF/000184 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 16.580 #=GS 4fw2B01/54-215 AC P03354 #=GS 4fw2B01/54-215 OS Rous sarcoma virus - Prague C #=GS 4fw2B01/54-215 DE Gag-Pol polyprotein #=GS 4fw2B01/54-215 DR CATH; 4fw2; B:54-215; #=GS 4fw2B01/54-215 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS 4fw2B01/54-215 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS 4fw2A01/52-215 AC P03354 #=GS 4fw2A01/52-215 OS Rous sarcoma virus - Prague C #=GS 4fw2A01/52-215 DE Gag-Pol polyprotein #=GS 4fw2A01/52-215 DR CATH; 4fw2; A:52-215; #=GS 4fw2A01/52-215 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS 4fw2A01/52-215 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS 4fw1B01/1-167 AC P03354 #=GS 4fw1B01/1-167 OS Rous sarcoma virus - Prague C #=GS 4fw1B01/1-167 DE Gag-Pol polyprotein #=GS 4fw1B01/1-167 DR CATH; 4fw1; B:54-215; #=GS 4fw1B01/1-167 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS 4fw1B01/1-167 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS 4fw1A01/1-167 AC P03354 #=GS 4fw1A01/1-167 OS Rous sarcoma virus - Prague C #=GS 4fw1A01/1-167 DE Gag-Pol polyprotein #=GS 4fw1A01/1-167 DR CATH; 4fw1; A:52-215; #=GS 4fw1A01/1-167 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS 4fw1A01/1-167 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS 1c1aB01/1-167 AC P03354 #=GS 1c1aB01/1-167 OS Rous sarcoma virus - Prague C #=GS 1c1aB01/1-167 DE Gag-Pol polyprotein #=GS 1c1aB01/1-167 DR CATH; 1c1a; B:55-215; #=GS 1c1aB01/1-167 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS 1c1aB01/1-167 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS 1c1aA01/1-167 AC P03354 #=GS 1c1aA01/1-167 OS Rous sarcoma virus - Prague C #=GS 1c1aA01/1-167 DE Gag-Pol polyprotein #=GS 1c1aA01/1-167 DR CATH; 1c1a; A:52-215; #=GS 1c1aA01/1-167 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS 1c1aA01/1-167 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS 1c0mD01/1-167 AC P03354 #=GS 1c0mD01/1-167 OS Rous sarcoma virus - Prague C #=GS 1c0mD01/1-167 DE Gag-Pol polyprotein #=GS 1c0mD01/1-167 DR CATH; 1c0m; D:54-215; #=GS 1c0mD01/1-167 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS 1c0mD01/1-167 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS 1c0mC01/1-167 AC P03354 #=GS 1c0mC01/1-167 OS Rous sarcoma virus - Prague C #=GS 1c0mC01/1-167 DE Gag-Pol polyprotein #=GS 1c0mC01/1-167 DR CATH; 1c0m; C:49-215; #=GS 1c0mC01/1-167 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS 1c0mC01/1-167 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS 1c0mB01/1-167 AC P03354 #=GS 1c0mB01/1-167 OS Rous sarcoma virus - Prague C #=GS 1c0mB01/1-167 DE Gag-Pol polyprotein #=GS 1c0mB01/1-167 DR CATH; 1c0m; B:54-215; #=GS 1c0mB01/1-167 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS 1c0mB01/1-167 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS 1c0mA01/1-167 AC P03354 #=GS 1c0mA01/1-167 OS Rous sarcoma virus - Prague C #=GS 1c0mA01/1-167 DE Gag-Pol polyprotein #=GS 1c0mA01/1-167 DR CATH; 1c0m; A:49-215; #=GS 1c0mA01/1-167 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS 1c0mA01/1-167 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS 1asuA00/1-162 AC O92956 #=GS 1asuA00/1-162 OS Rous sarcoma virus - Schmidt-Ruppin B #=GS 1asuA00/1-162 DE Gag-Pol polyprotein #=GS 1asuA00/1-162 DR CATH; 1asu; A:48-209; #=GS 1asuA00/1-162 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS 1asuA00/1-162 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS 1a5xA00/1-158 AC O92956 #=GS 1a5xA00/1-158 OS Rous sarcoma virus - Schmidt-Ruppin B #=GS 1a5xA00/1-158 DE Gag-Pol polyprotein #=GS 1a5xA00/1-158 DR CATH; 1a5x; A:54-199; #=GS 1a5xA00/1-158 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS 1a5xA00/1-158 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS 1a5wA00/1-158 AC O92956 #=GS 1a5wA00/1-158 OS Rous sarcoma virus - Schmidt-Ruppin B #=GS 1a5wA00/1-158 DE Gag-Pol polyprotein #=GS 1a5wA00/1-158 DR CATH; 1a5w; A:54-199; #=GS 1a5wA00/1-158 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS 1a5wA00/1-158 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS 1a5vA00/1-158 AC O92956 #=GS 1a5vA00/1-158 OS Rous sarcoma virus - Schmidt-Ruppin B #=GS 1a5vA00/1-158 DE Gag-Pol polyprotein #=GS 1a5vA00/1-158 DR CATH; 1a5v; A:54-199; #=GS 1a5vA00/1-158 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS 1a5vA00/1-158 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS Q7SQ98/624-787 AC Q7SQ98 #=GS Q7SQ98/624-787 OS Avian leukosis virus #=GS Q7SQ98/624-787 DE Pol polyprotein #=GS Q7SQ98/624-787 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Avian leukosis virus; #=GS Q7SQ98/624-787 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS A0A075DWD5/121-284 AC A0A075DWD5 #=GS A0A075DWD5/121-284 OS Tasmanian devil retrovirus #=GS A0A075DWD5/121-284 DE Polymerase #=GS A0A075DWD5/121-284 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Tasmanian devil retrovirus; #=GS P03354/1332-1495 AC P03354 #=GS P03354/1332-1495 OS Rous sarcoma virus - Prague C #=GS P03354/1332-1495 DE Gag-Pol polyprotein #=GS P03354/1332-1495 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS P03354/1332-1495 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS Q04095/1332-1495 AC Q04095 #=GS Q04095/1332-1495 OS Rous sarcoma virus (strain Schmidt-Ruppin A) #=GS Q04095/1332-1495 DE Gag-Pol polyprotein #=GS Q04095/1332-1495 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS Q04095/1332-1495 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS O92956/1332-1495 AC O92956 #=GS O92956/1332-1495 OS Rous sarcoma virus - Schmidt-Ruppin B #=GS O92956/1332-1495 DE Gag-Pol polyprotein #=GS O92956/1332-1495 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; #=GS O92956/1332-1495 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS G3FBH7/52-216 AC G3FBH7 #=GS G3FBH7/52-216 OS Rous-associated virus type 1 #=GS G3FBH7/52-216 DE Integrase #=GS G3FBH7/52-216 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Avian leukosis virus; #=GS Q8AFM1/38-195 AC Q8AFM1 #=GS Q8AFM1/38-195 OS Avian leukosis virus #=GS Q8AFM1/38-195 DE Pol protein #=GS Q8AFM1/38-195 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Avian leukosis virus; #=GS A4LA61/521-678 AC A4LA61 #=GS A4LA61/521-678 OS Avian leukosis virus #=GS A4LA61/521-678 DE Pol polyprotein #=GS A4LA61/521-678 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Avian leukosis virus; #=GS Q98WV8/773-936 AC Q98WV8 #=GS Q98WV8/773-936 OS Avian leukosis virus #=GS Q98WV8/773-936 DE Gag polyprotein #=GS Q98WV8/773-936 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Avian leukosis virus; #=GF SQ 23 4fw2B01/54-215 ------GLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQHHWATAIAVLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHKERGENTKTPIQKHWRP 4fw2A01/52-215 ----PRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQHHWATAIAVLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHKERGENTKTPIQKHWRP 4fw1B01/1-167 -GVNPRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQHHWATAIAVLGRPKAIKTDNGDAFTSKSTREWLARWGIAHTTGIPGNSQGQAMVCRANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHKERGENTKTPIQKHWRP 4fw1A01/1-167 -GVNPRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQHHWATAIAVLGRPKAIKTDNGDAFTSKSTREWLARWGIAHTTGIPGNSQGQAMVCRANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHKERGENTKTPIQKHWRP 1c1aB01/1-167 -GVNPRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQHHWATAIAVLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDRIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHKERGENTKTPIQKHWRP 1c1aA01/1-167 -GVNPRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQHHWATAIAVLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDRIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHKERGENTKTPIQKHWRP 1c0mD01/1-167 -GVNPRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQHHWATAIAVLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDRIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHKERGENTKTPIQKHWRP 1c0mC01/1-167 -GVNPRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQHHWATAIAVLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDRIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHKERGENTKTPIQKHWRP 1c0mB01/1-167 -GVNPRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQHHWATAIAVLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDRIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHKERGENTKTPIQKHWRP 1c0mA01/1-167 -GVNPRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQHHWATAIAVLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDRIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHKERGENTKTPIQKHWRP 1asuA00/1-162 PLREPRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKTNL------ 1a5xA00/1-158 ----PRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKTNL------ 1a5wA00/1-158 ----PRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKTNL------ 1a5vA00/1-158 ----PRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKTNL------ Q7SQ98/624-787 ----PRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKTPIQKHWRP A0A075DWD5/121-284 ----PRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKRGELLAKAMYALNHFERGENTKTPIQKHWRP P03354/1332-1495 ----PRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQHHWATAIAVLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDRIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKTPIQKHWRP Q04095/1332-1495 ----PRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKTPIQKHWRP O92956/1332-1495 ----PRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPASKQGELLAKAMYALNHFERGENTKTPVQKHWRP G3FBH7/52-216 ----PRGLGPLCQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPASKQGELLAKAMYALNHFERGENTKTPVQKHWRP Q8AFM1/38-195 ----PRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSLSQAMVERANRLLKDKIRVLAERDGFMKRIPTSKQGELLAKAMYALNHFERGENTKTPI------ A4LA61/521-678 ----PRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKTPI------ Q98WV8/773-936 ----PRGLGPL-QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKTPIQKHWRP #=GC scorecons 0001889999909999999999999999999999999999999999999999996999999999999999999999977999999999999999999999999988999979999999979999998999999998998999999999999949999999966333333 #=GC scorecons_70 ____*******_******************************************_*************************************************************************************************_**********______ #=GC scorecons_80 ____*******_******************************************_*************************************************************************************************_********________ #=GC scorecons_90 ____*******_******************************************_**********************__*************************_*****_********_********************************_********________ //