# STOCKHOLM 1.0
#=GF ID 3.30.420.10/FF/000102
#=GF DE Gag-Pol polyprotein
#=GF AC 3.30.420.10/FF/000102
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 33.181
#=GS 5dmrA00/1-172       AC P03355
#=GS 5dmrA00/1-172       OS Moloney murine leukemia virus isolate Shinnick
#=GS 5dmrA00/1-172       DE Gag-Pol polyprotein
#=GS 5dmrA00/1-172       DR CATH; 5dmr; A:507-666; 
#=GS 5dmrA00/1-172       DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; 
#=GS 5dmrA00/1-172       DR GO; GO:0003677; GO:0006308; GO:0032993; GO:0044824; GO:0044826; 
#=GS 5dmrA00/1-172       DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; 
#=GS P31795/1-175        AC P31795
#=GS P31795/1-175        OS Radiation murine leukemia virus (strain Kaplan)
#=GS P31795/1-175        DE Pol polyprotein
#=GS P31795/1-175        DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; 
#=GS P31795/1-175        DR EC; 2.7.7.49; 3.1.26.4; 
#=GS A1Z651/1153-1328    AC A1Z651
#=GS A1Z651/1153-1328    OS Xenotropic MuLV-related virus VP62
#=GS A1Z651/1153-1328    DE Gag-Pol polyprotein
#=GS A1Z651/1153-1328    DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia-related retroviruses; 
#=GS A1Z651/1153-1328    DR GO; GO:0042802; 
#=GS A1Z651/1153-1328    DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; 
#=GS Q8UN00/1155-1330    AC Q8UN00
#=GS Q8UN00/1155-1330    OS Moloney murine leukemia virus
#=GS Q8UN00/1155-1330    DE Pr180 Gag-Pro-Pol polyprotein
#=GS Q8UN00/1155-1330    DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; 
#=GS Q8UN00/1155-1330    DR GO; GO:0005515; 
#=GS 3v1rA00/1-180       AC Q2F7J3
#=GS 3v1rA00/1-180       OS Xenotropic MuLV-related virus VP35
#=GS 3v1rA00/1-180       DE Gag-Pol polyprotein
#=GS 3v1rA00/1-180       DR CATH; 3v1r; A:503-667; 
#=GS 3v1rA00/1-180       DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia-related retroviruses; 
#=GS 3v1rA00/1-180       DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; 
#=GS 3v1oA00/1-180       AC Q2F7J3
#=GS 3v1oA00/1-180       OS Xenotropic MuLV-related virus VP35
#=GS 3v1oA00/1-180       DE Gag-Pol polyprotein
#=GS 3v1oA00/1-180       DR CATH; 3v1o; A:503-667; 
#=GS 3v1oA00/1-180       DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia-related retroviruses; 
#=GS 3v1oA00/1-180       DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; 
#=GS A0A074LLR4/517-685  AC A0A074LLR4
#=GS A0A074LLR4/517-685  OS Tumebacillus flagellatus
#=GS A0A074LLR4/517-685  DE Uncharacterized protein
#=GS A0A074LLR4/517-685  DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Tumebacillus; Tumebacillus flagellatus; 
#=GS P03355/1155-1330    AC P03355
#=GS P03355/1155-1330    OS Moloney murine leukemia virus isolate Shinnick
#=GS P03355/1155-1330    DE Gag-Pol polyprotein
#=GS P03355/1155-1330    DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; 
#=GS P03355/1155-1330    DR GO; GO:0003677; GO:0006308; GO:0032993; GO:0044824; GO:0044826; 
#=GS P03355/1155-1330    DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; 
#=GS Q2F7J3/1153-1328    AC Q2F7J3
#=GS Q2F7J3/1153-1328    OS Xenotropic MuLV-related virus VP35
#=GS Q2F7J3/1153-1328    DE Gag-Pol polyprotein
#=GS Q2F7J3/1153-1328    DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia-related retroviruses; 
#=GS Q2F7J3/1153-1328    DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; 
#=GS Q2F7J0/1150-1328    AC Q2F7J0
#=GS Q2F7J0/1150-1328    OS Xenotropic MuLV-related virus VP42
#=GS Q2F7J0/1150-1328    DE Gag-Pol polyprotein
#=GS Q2F7J0/1150-1328    DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia-related retroviruses; 
#=GS Q2F7J0/1150-1328    DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; 
#=GS P03356/1154-1328    AC P03356
#=GS P03356/1154-1328    OS AKR (endogenous) murine leukemia virus
#=GS P03356/1154-1328    DE Gag-Pol polyprotein
#=GS P03356/1154-1328    DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; 
#=GS P03356/1154-1328    DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; 
#=GS Q7SVK7/1154-1328    AC Q7SVK7
#=GS Q7SVK7/1154-1328    OS Murine leukemia virus (strain BM5 ECO)
#=GS Q7SVK7/1154-1328    DE Gag-pol polyprotein
#=GS Q7SVK7/1154-1328    DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; 
#=GS Q7SVK7/1154-1328    DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; 
#=GS D0UFA3/1153-1328    AC D0UFA3
#=GS D0UFA3/1153-1328    OS Xenotropic MuLV-related virus
#=GS D0UFA3/1153-1328    DE Putative gag-pro-pol polyprotein
#=GS D0UFA3/1153-1328    DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia-related retroviruses; 
#=GS D0UFA3/1153-1328    DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; 
#=GS P08361/1153-1328    AC P08361
#=GS P08361/1153-1328    OS Cas-Br-E murine leukemia virus
#=GS P08361/1153-1328    DE Gag-Pol polyprotein
#=GS P08361/1153-1328    DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; 
#=GS P08361/1153-1328    DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; 
#=GS P26810/1156-1331    AC P26810
#=GS P26810/1156-1331    OS Friend murine leukemia virus (ISOLATE 57)
#=GS P26810/1156-1331    DE Gag-Pol polyprotein
#=GS P26810/1156-1331    DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; 
#=GS P26810/1156-1331    DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; 
#=GS P26809/1155-1330    AC P26809
#=GS P26809/1155-1330    OS Friend murine leukemia virus (ISOLATE FB29)
#=GS P26809/1155-1330    DE Gag-Pol polyprotein
#=GS P26809/1155-1330    DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; 
#=GS P26809/1155-1330    DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; 
#=GS P26808/1155-1330    AC P26808
#=GS P26808/1155-1330    OS Friend murine leukemia virus (ISOLATE PVC-211)
#=GS P26808/1155-1330    DE Gag-Pol polyprotein
#=GS P26808/1155-1330    DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; 
#=GS P26808/1155-1330    DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; 
#=GS Q9E7M1/1153-1328    AC Q9E7M1
#=GS Q9E7M1/1153-1328    OS DG-75 Murine leukemia virus
#=GS Q9E7M1/1153-1328    DE Putative gag-pro-pol polyprotein
#=GS Q9E7M1/1153-1328    DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; 
#=GS Q5PYI3/1150-1325    AC Q5PYI3
#=GS Q5PYI3/1150-1325    OS Murine leukemia virus
#=GS Q5PYI3/1150-1325    DE Gag-pol polyprotein
#=GS Q5PYI3/1150-1325    DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; 
#=GS T2AUF0/286-461      AC T2AUF0
#=GS T2AUF0/286-461      OS PreXMRV-1/PreXMRV-2 recombinant
#=GS T2AUF0/286-461      DE Gag-pro-pol polyprotein
#=GS T2AUF0/286-461      DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia-related retroviruses; 
#=GS Q9E007/126-301      AC Q9E007
#=GS Q9E007/126-301      OS Murine leukemia virus
#=GS Q9E007/126-301      DE Polyprotein
#=GS Q9E007/126-301      DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; 
#=GS Q60FS6/616-791      AC Q60FS6
#=GS Q60FS6/616-791      OS Murine leukemia virus
#=GS Q60FS6/616-791      DE POL polyprotein
#=GS Q60FS6/616-791      DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; 
#=GS Q83497/126-300      AC Q83497
#=GS Q83497/126-300      OS Murine leukemia virus
#=GS Q83497/126-300      DE Reverse transcriptase
#=GS Q83497/126-300      DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; 
#=GF SQ 23
5dmrA00/1-172               --------AEAHGTRPDLTDQPLPDADHTWYTDGSSLLQEGQRKAGAAVTTETEVIWAKALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHIHGEIYRRRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGHSAEARGNRMADQAARKAAITETPDTSTLL
P31795/1-175                ----LEILAETHGTRPDLTDQPIPDADHTWYTDGSSFLQEGQRKAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMAEGKRLNVYTDSRYAFATAHIHGEIYKRRGLLTSEGREIKNKSEILALLKALFLPKRLSIIHCLGHQKGDSAEARGNRLADQAAREAAIKAPPDTSTL-
A1Z651/1153-1328            ----LEILAETHGTRPDLTDQPIPDADYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHVHGEIYRRRGLLTSEGREIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKAVLETSTLL
Q8UN00/1155-1330            ----LDILAEAHGTRPDLTDQPLPDADHTWYTDGSSFLQEGQRKAGAAVTTETEVIWAKALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHIHGEIYRRRGLLTSEGKEIKNKGEILALLKALFLPKRLSIIHCPGHQKGHSAEARGNRMADQAARKAAITETPDTSTLL
3v1rA00/1-180               DRWGSEILAETHGTRPDLTDQPIPDADYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHVHGEIYRRRGLLTSEGREIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKAVLETSTLL
3v1oA00/1-180               DRWGSEILAETHGTRPDLTDQPIPDADYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHVHGEIYRRRGLLTSEGREIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKAVLETSTLL
A0A074LLR4/517-685          ----LDILAEAHGTRPDLTDQPLPDADHTWYTNGSSLLQEGQRKAGAAVTTETEVIWAKALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHIHGEIYRRRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGHSAEARGNRMADQAARKAAITET-------
P03355/1155-1330            ----LDILAEAHGTRPDLTDQPLPDADHTWYTDGSSLLQEGQRKAGAAVTTETEVIWAKALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHIHGEIYRRRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGHSAEARGNRMADQAARKAAITETPDTSTLL
Q2F7J3/1153-1328            ----LEILAETHGTRPDLTDQPIPDADYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHVHGEIYRRRGLLTSEGREIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKAVLETSTLL
Q2F7J0/1150-1328            HDC-LEILAETHGTRPDLTDQPIPDADYTWYTDGGSFLQEGQRRAGAAVTTETEVIWGGVLPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHVHGEIYRRRGLLTSEGREIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKAVLETSTLL
P03356/1154-1328            ----LEILAETHGTRPDLTDQPIPDADHTWYTDGSSFLQEGQRKAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMAEGKRLNVYTDSRYAFATAHIHGEIYRRRGLLTSEGREIKNKSEILALLKALFLPKRLSIIHCLGHQKGDSAEARGNRLADQAAREAAIKTPPDTSTL-
Q7SVK7/1154-1328            ----LEILAETHGTRPDLTDQPIPDADHTWYTDGSSFLQEGQRKAGAAVTTETEVIWAGALPAGTSAQRAELIALTQALKMAEGKRLNVYTDSRYAFATAHIHGEIYRRRGLLTSEGREIKNKSEILALLKALFLPKRLSIIHCLGHQKGDSAEARGNRLADQAAREAAIKTPPDTSTL-
D0UFA3/1153-1328            ----LEILAETHGTRPDLTDQPIPDADYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHVHGEIYRRRGLLTSEGREIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKAVLETSTLL
P08361/1153-1328            ----LDILAEAHGTRSDLMDQPLPDADHTWYTDGSSFLQEGQRKAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHIHGEIYRRRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREVATRETPETSTLL
P26810/1156-1331            ----LDILAEAHGTRPDLTDQPLPDADHTWYTDGSSFLQEGQRRAGAAVTTETEVIWAKALPAGTSAQRAELIALTQALKMAAGKKLNVYTDSRYAFATAHIHGEIYRRRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGNHAEARGNRMADQAAREVATRETPETSTLL
P26809/1155-1330            ----LDILAEAHGTRPDLTDQPLPDADHTWYTDGSSFLQEGQRKAGAAVTTETEVVWAKALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHIHGEIYRRRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGNRAEARGNRMADQAAREVATRETPETSTLL
P26808/1155-1330            ----LDILAEAHGTRPDLTDQPLPDADHTWYTDGSSFLQEGQRKAGAAVTTETEVIWAKALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHIHGEIYRRRGLLTSEGKEIKNKEEILALLKALFLPKRLSIIHCPGHQKGNRAEARGNRMADQAAREVATRETPETSTLL
Q9E7M1/1153-1328            ----LEILAETHGTRPDLTDQPIPDADHTWYTDGSSFLQEGQRKAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHVHGEIYRRRGLLTSEGREIKNKSEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAIRTSPETSTLL
Q5PYI3/1150-1325            ----LEILAETHGTRPDPTDQPLPDADYTWYTDGSSSLQGGQRKAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHIHGEIYRRRGLLTSEGKEIKNKSEILALLNALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMGTVTETSKLL
T2AUF0/286-461              ----LEILAETHGTRPDLTDQPIPDADYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHVHGEIYRRRGLLTSEGREIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKAVLETSTLL
Q9E007/126-301              ----LDILAEAHGTRSDLTDQPLPDADHTWYTDGSSFLQEGQRKAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHIHGEIYRRRGLLTSEGKEIKNKGEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREVATRETPDTSTLL
Q60FS6/616-791              ----LDILAEAHGTRPDLTDQPLPDADHTWYTDGSSFLQKGQRKAGAAVTTETEVIWAKALPSGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHIHGEIYRRRGLLTSEGKEIKNKGEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREIASKETPETSTLL
Q83497/126-300              ----LDILAEAHGTRSDLTDQALPDXDHTWYTDGSSFLQEGQRKAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKLNLYTDSRYAFATAHIHGEIYRRRGLLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGKQRTARGNRMADQAAREVATRETPGTSTL-
#=GC scorecons              000066889969999798899869979799998989799899979999999999989868998999999999999999999989989989999999999997999998999999999799999499999989999999999999799999568899999799999976955455577774
#=GC scorecons_70           ____***********************************************************************************************************************_**************************_******************______****_
#=GC scorecons_80           ______****_***********_*************_*********************_**********************************************************_*****_**************************__***************_*______**_*_
#=GC scorecons_90           ________**_****_******_**_*_********_**_***_**************_******************************************_***************_*****_********************_*****__*******_******__*___________
//