# STOCKHOLM 1.0
#=GF ID 3.30.310.130/FF/000008
#=GF DE Ubiquitin-like-specific protease 1
#=GF AC 3.30.310.130/FF/000008
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 83.197
#=GS 2hl9A02/66-170      AC Q02724
#=GS 2hl9A02/66-170      OS Saccharomyces cerevisiae S288C
#=GS 2hl9A02/66-170      DE Ubiquitin-like-specific protease 1
#=GS 2hl9A02/66-170      DR CATH; 2hl9; A:466-570; 
#=GS 2hl9A02/66-170      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS 2hl9A02/66-170      DR GO; GO:0000086; GO:0005635; GO:0005730; GO:0008234; GO:0016926; GO:0044877; GO:0070140; 
#=GS 2hl9A02/66-170      DR EC; 3.4.22.68; 
#=GS A0A1D8PSK4/332-439  AC A0A1D8PSK4
#=GS A0A1D8PSK4/332-439  OS Candida albicans SC5314
#=GS A0A1D8PSK4/332-439  DE SUMO protease
#=GS A0A1D8PSK4/332-439  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Candida; Candida albicans; 
#=GS A0A1D8PSK4/332-439  DR GO; GO:0016926; GO:0070140; 
#=GS 2hl8A02/66-170      AC Q02724
#=GS 2hl8A02/66-170      OS Saccharomyces cerevisiae S288C
#=GS 2hl8A02/66-170      DE Ubiquitin-like-specific protease 1
#=GS 2hl8A02/66-170      DR CATH; 2hl8; A:466-570; 
#=GS 2hl8A02/66-170      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS 2hl8A02/66-170      DR GO; GO:0000086; GO:0005635; GO:0005730; GO:0008234; GO:0016926; GO:0044877; GO:0070140; 
#=GS 2hl8A02/66-170      DR EC; 3.4.22.68; 
#=GS 2hkpA02/66-170      AC Q02724
#=GS 2hkpA02/66-170      OS Saccharomyces cerevisiae S288C
#=GS 2hkpA02/66-170      DE Ubiquitin-like-specific protease 1
#=GS 2hkpA02/66-170      DR CATH; 2hkp; A:466-570; 
#=GS 2hkpA02/66-170      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS 2hkpA02/66-170      DR GO; GO:0000086; GO:0005635; GO:0005730; GO:0008234; GO:0016926; GO:0044877; GO:0070140; 
#=GS 2hkpA02/66-170      DR EC; 3.4.22.68; 
#=GS 1euvA02/66-170      AC Q02724
#=GS 1euvA02/66-170      OS Saccharomyces cerevisiae S288C
#=GS 1euvA02/66-170      DE Ubiquitin-like-specific protease 1
#=GS 1euvA02/66-170      DR CATH; 1euv; A:466-570; 
#=GS 1euvA02/66-170      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS 1euvA02/66-170      DR GO; GO:0000086; GO:0005635; GO:0005730; GO:0008234; GO:0016926; GO:0044877; GO:0070140; 
#=GS 1euvA02/66-170      DR EC; 3.4.22.68; 
#=GS Q02724/466-570      AC Q02724
#=GS Q02724/466-570      OS Saccharomyces cerevisiae S288C
#=GS Q02724/466-570      DE Ubiquitin-like-specific protease 1
#=GS Q02724/466-570      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS Q02724/466-570      DR GO; GO:0000086; GO:0005635; GO:0005730; GO:0008234; GO:0016926; GO:0044877; GO:0070140; 
#=GS Q02724/466-570      DR EC; 3.4.22.68; 
#=GS E9H5Y3/10-85        AC E9H5Y3
#=GS E9H5Y3/10-85        OS Daphnia pulex
#=GS E9H5Y3/10-85        DE Uncharacterized protein
#=GS E9H5Y3/10-85        DR ORG; Eukaryota; Metazoa; Arthropoda; Crustacea; Branchiopoda; Phyllopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia; Daphnia pulex; 
#=GS Q750H2/368-472      AC Q750H2
#=GS Q750H2/368-472      OS Eremothecium gossypii ATCC 10895
#=GS Q750H2/368-472      DE AGL019Wp
#=GS Q750H2/368-472      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Eremothecium; Eremothecium gossypii; 
#=GS R9XK74/369-473      AC R9XK74
#=GS R9XK74/369-473      OS Saccharomycetaceae sp. 'Ashbya aceri'
#=GS R9XK74/369-473      DE AaceriAGL019Wp
#=GS R9XK74/369-473      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomycetaceae sp. 'Ashbya aceri'; 
#=GS B9WLI2/331-438      AC B9WLI2
#=GS B9WLI2/331-438      OS Candida dubliniensis CD36
#=GS B9WLI2/331-438      DE Ubiquitin-like-specific protease, putative
#=GS B9WLI2/331-438      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Candida; Candida dubliniensis; 
#=GS J5PCP2/470-574      AC J5PCP2
#=GS J5PCP2/470-574      OS Saccharomyces kudriavzevii IFO 1802
#=GS J5PCP2/470-574      DE ULP1-like protein
#=GS J5PCP2/470-574      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces kudriavzevii; 
#=GS H0GQA9/390-494      AC H0GQA9
#=GS H0GQA9/390-494      OS Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7
#=GS H0GQA9/390-494      DE Ulp1p
#=GS H0GQA9/390-494      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae x Saccharomyces kudriavzevii; 
#=GS A0A0L8VFW2/466-570  AC A0A0L8VFW2
#=GS A0A0L8VFW2/466-570  OS Saccharomyces sp. 'boulardii'
#=GS A0A0L8VFW2/466-570  DE ULP1p Protease that specifically cleaves Smt3p protein conjugates
#=GS A0A0L8VFW2/466-570  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces sp. 'boulardii'; 
#=GS A0A0L8RAR7/470-574  AC A0A0L8RAR7
#=GS A0A0L8RAR7/470-574  OS Saccharomyces eubayanus
#=GS A0A0L8RAR7/470-574  DE ULP1-like protein
#=GS A0A0L8RAR7/470-574  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces eubayanus; 
#=GS N1NVI6/466-570      AC N1NVI6
#=GS N1NVI6/466-570      OS Saccharomyces cerevisiae CEN.PK113-7D
#=GS N1NVI6/466-570      DE Ulp1p
#=GS N1NVI6/466-570      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS C8ZJ08/466-570      AC C8ZJ08
#=GS C8ZJ08/466-570      OS Saccharomyces cerevisiae EC1118
#=GS C8ZJ08/466-570      DE Ulp1p
#=GS C8ZJ08/466-570      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS A6ZWM6/466-570      AC A6ZWM6
#=GS A6ZWM6/466-570      OS Saccharomyces cerevisiae YJM789
#=GS A6ZWM6/466-570      DE Smt3-specific protease
#=GS A6ZWM6/466-570      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS G2WPF8/466-570      AC G2WPF8
#=GS G2WPF8/466-570      OS Saccharomyces cerevisiae Kyokai no. 7
#=GS G2WPF8/466-570      DE K7_Ulp1p
#=GS G2WPF8/466-570      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS B5VTE2/466-570      AC B5VTE2
#=GS B5VTE2/466-570      OS Saccharomyces cerevisiae AWRI1631
#=GS B5VTE2/466-570      DE YPL020Cp-like protein
#=GS B5VTE2/466-570      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS B3LL43/466-570      AC B3LL43
#=GS B3LL43/466-570      OS Saccharomyces cerevisiae RM11-1a
#=GS B3LL43/466-570      DE Uncharacterized protein
#=GS B3LL43/466-570      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS C7GU31/466-570      AC C7GU31
#=GS C7GU31/466-570      OS Saccharomyces cerevisiae JAY291
#=GS C7GU31/466-570      DE Ulp1p
#=GS C7GU31/466-570      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GF SQ 21
2hl9A02/66-170              PNTVAFNSFFYTNLSERGYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVMEESK--HTIGEDFDLI-HLD
A0A1D8PSK4/332-439          PNVFGWTTHFYTTLVQRGYQGVARWAKRKKINVFTMEKILTPINIGNMHWALAVIDNIKKTITYYDSLGGTHNSGNPQAVQTLAHYMTEEAKRLGVMGNEYKLIPHME
2hl8A02/66-170              PNTVAFNSFFYTNLSERGYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVMEESK--HTIGEDFDLI-HLD
2hkpA02/66-170              PNTVAFNSFFYTNLSERGYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVMEESK--HTIGEDFDLI-HLD
1euvA02/66-170              PNTVAFNSFFYTNLSERGYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVMEESK--HTIGEDFDLI-HLD
Q02724/466-570              PNTVAFNSFFYTNLSERGYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVMEESK--HTIGEDFDLI-HLD
E9H5Y3/10-85                KR--SMSSFFPVKLKKLGYCGLPRWMIDKDFS--TVDMIFVPVNVKNNHWSLVVVNTKTFVLKLYDSL---------VRIEEIAGYM--------------EL-----
Q750H2/368-472              AHTVAFNSFFYSTLSERGYQGVRRWMKRKKVKIQDLHKIFVPINLDQSHWALGIIDLTKKKVMYADSLTSRANSMSFAIMKDLQNYVIEESG--GSMGKDFELE-HIA
R9XK74/369-473              THTVAFNSFFYSTLSERGYQGVRRWMKRKKVKIEDLRKIFVPINLDQSHWALGIIDITKKKIMYADSLTSRPNSMSFAIMKDLQNYVLEESG--GSLGQDFELE-HIA
B9WLI2/331-438              PNVFGWTTHFYTTLAQRGYQGVARWAKRKKINVFAMEKILTPINIGNMHWALAVIDNIKKTITYYDSLGGSRNSGNPQAVQTLARYMKEEAKRLGVTGNEYRLIPHTE
J5PCP2/470-574              PNTVAFNSFFYTNLSERGYQGVRRWMKRKKTQIGELDKIFTPINLNQSHWALGIIDLKKKTISYVDSLANGPNAMSFAILTDLQKYVIEESK--HTIGEEFDLI-HLD
H0GQA9/390-494              PNTVAFNSFFYTNLSERGYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVMEESK--HTIGEDFDLI-HLD
A0A0L8VFW2/466-570          PNTVAFNSFFYTNLSERGYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVMEESK--HTIGEDFDLI-HLD
A0A0L8RAR7/470-574          ADTVAFNSFFYTNLSERGYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVIQESK--HSMGEDFDLI-HLD
N1NVI6/466-570              PNTVAFNSFFYTNLSERGYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVMEESK--HTIGEDFDLI-HLD
C8ZJ08/466-570              PNTVAFNSFFYTNLSERGYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVMEESK--HTIGEDFDLI-HLD
A6ZWM6/466-570              PNTVAFNSFFYTNLSERGYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVMEESK--HTIGEDFDLI-HLD
G2WPF8/466-570              PNTVAFNSFFYTNLSERGYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVMEESK--HTIGEDFDLI-HLD
B5VTE2/466-570              PNTVAFNSFFYTNLSERGYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVMEESK--HTIGEDFDLI-HLD
B3LL43/466-570              PNTVAFNSFFYTNLSERGYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVMEESK--HTIGEDFDLI-HLD
C7GU31/466-570              PNTVAFNSFFYTNLSERGYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVMEESK--HTIGEDFDLI-HLD
#=GC scorecons              554454566965594569969759966697445246669769796455997957774466573649993333643435454575496356440033363455940633
#=GC scorecons_70           _______****__*__******_*******_______***_***____****_***__*__*_*_***______________*__**_______________*_____
#=GC scorecons_80           _________*___*___**_**_**___*_________*__***____****__**_________***______________*__*________________*_____
#=GC scorecons_90           _________*___*___**_*__**___*_________*__*_*____**_*_____________***_________________*________________*_____
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