# STOCKHOLM 1.0
#=GF ID 3.30.300.20/FF/000024
#=GF DE Probable transcription termination protein NusA
#=GF AC 3.30.300.20/FF/000024
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 93.173
#=GS B1L737/4-81      AC B1L737
#=GS B1L737/4-81      OS Candidatus Korarchaeum cryptofilum OPF8
#=GS B1L737/4-81      DE Probable transcription termination protein NusA
#=GS B1L737/4-81      DR ORG; Archaea; Candidatus Korarchaeota; Candidatus Korarchaeum; Candidatus Korarchaeum cryptofilum; 
#=GS Q8TRC0/8-80      AC Q8TRC0
#=GS Q8TRC0/8-80      OS Methanosarcina acetivorans C2A
#=GS Q8TRC0/8-80      DE Probable transcription termination protein NusA
#=GS Q8TRC0/8-80      DR ORG; Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina; Methanosarcina acetivorans; 
#=GS Q5JE36/2-73      AC Q5JE36
#=GS Q5JE36/2-73      OS Thermococcus kodakarensis KOD1
#=GS Q5JE36/2-73      DE Probable transcription termination protein NusA
#=GS Q5JE36/2-73      DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus; Thermococcus kodakarensis; 
#=GS A9A465/1-75      AC A9A465
#=GS A9A465/1-75      OS Nitrosopumilus maritimus SCM1
#=GS A9A465/1-75      DE Probable transcription termination protein NusA
#=GS A9A465/1-75      DR ORG; Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus; Nitrosopumilus maritimus; 
#=GS Q8ZYQ5/1-73      AC Q8ZYQ5
#=GS Q8ZYQ5/1-73      OS Pyrobaculum aerophilum str. IM2
#=GS Q8ZYQ5/1-73      DE Probable transcription termination protein NusA
#=GS Q8ZYQ5/1-73      DR ORG; Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Pyrobaculum; Pyrobaculum aerophilum; 
#=GS B0R8D2/1-71      AC B0R8D2
#=GS B0R8D2/1-71      OS Halobacterium salinarum R1
#=GS B0R8D2/1-71      DE Probable transcription termination protein NusA
#=GS B0R8D2/1-71      DR ORG; Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium; Halobacterium salinarum; 
#=GS A0A0J9EAR4/1-75  AC A0A0J9EAR4
#=GS A0A0J9EAR4/1-75  OS Candidatus Rhodobacter lobularis
#=GS A0A0J9EAR4/1-75  DE NusA protein-like protein
#=GS A0A0J9EAR4/1-75  DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter; Candidatus Rhodobacter lobularis; 
#=GS S2ERI7/1-75      AC S2ERI7
#=GS S2ERI7/1-75      OS Candidatus Nitrosarchaeum limnium BG20
#=GS S2ERI7/1-75      DE Probable transcription termination protein NusA
#=GS S2ERI7/1-75      DR ORG; Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosarchaeum; Candidatus Nitrosarchaeum limnium; 
#=GS A0A2Z2HQT5/1-75  AC A0A2Z2HQT5
#=GS A0A2Z2HQT5/1-75  OS Candidatus Nitrosomarinus catalina
#=GS A0A2Z2HQT5/1-75  DE Probable transcription termination protein NusA
#=GS A0A2Z2HQT5/1-75  DR ORG; Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosomarinus; Candidatus Nitrosomarinus catalina; 
#=GS A0A368B077/1-75  AC A0A368B077
#=GS A0A368B077/1-75  OS Nitrosopumilus sp.
#=GS A0A368B077/1-75  DE Probable transcription termination protein NusA
#=GS A0A368B077/1-75  DR ORG; Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus; Nitrosopumilus sp.; 
#=GS I3D428/1-75      AC I3D428
#=GS I3D428/1-75      OS Candidatus Nitrosopumilus salaria BD31
#=GS I3D428/1-75      DE Probable transcription termination protein NusA
#=GS I3D428/1-75      DR ORG; Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus; Candidatus Nitrosopumilus salaria; 
#=GS A0A2G4JFI9/1-75  AC A0A2G4JFI9
#=GS A0A2G4JFI9/1-75  OS Nitrosarchaeum sp.
#=GS A0A2G4JFI9/1-75  DE Probable transcription termination protein NusA
#=GS A0A2G4JFI9/1-75  DR ORG; Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosarchaeum; Nitrosarchaeum sp.; 
#=GS A0A0R2P2H6/1-75  AC A0A0R2P2H6
#=GS A0A0R2P2H6/1-75  OS Nitrosopumilus sp. BACL13 MAG-121220-bin23
#=GS A0A0R2P2H6/1-75  DE Probable transcription termination protein NusA
#=GS A0A0R2P2H6/1-75  DR ORG; Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus; Nitrosopumilus sp. BACL13 MAG-121220-bin23; 
#=GS A0A0R2P3V5/1-75  AC A0A0R2P3V5
#=GS A0A0R2P3V5/1-75  OS Nitrosopumilus sp. BACL13 MAG-120910-bin56
#=GS A0A0R2P3V5/1-75  DE Probable transcription termination protein NusA
#=GS A0A0R2P3V5/1-75  DR ORG; Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus; Nitrosopumilus sp. BACL13 MAG-120910-bin56; 
#=GS K0BAN6/1-75      AC K0BAN6
#=GS K0BAN6/1-75      OS Candidatus Nitrosopumilus sediminis
#=GS K0BAN6/1-75      DE Probable transcription termination protein NusA
#=GS K0BAN6/1-75      DR ORG; Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus; Candidatus Nitrosopumilus sediminis; 
#=GS A0A0E3L629/1-72  AC A0A0E3L629
#=GS A0A0E3L629/1-72  OS Methanosarcina sp. MTP4
#=GS A0A0E3L629/1-72  DE Probable transcription termination protein NusA
#=GS A0A0E3L629/1-72  DR ORG; Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina; Methanosarcina sp. MTP4; 
#=GS A0A0E3NRK3/1-72  AC A0A0E3NRK3
#=GS A0A0E3NRK3/1-72  OS Methanosarcina sp. WH1
#=GS A0A0E3NRK3/1-72  DE Probable transcription termination protein NusA
#=GS A0A0E3NRK3/1-72  DR ORG; Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina; Methanosarcina sp. WH1; 
#=GS A0A0E3NLQ6/1-72  AC A0A0E3NLQ6
#=GS A0A0E3NLQ6/1-72  OS Methanosarcina sp. WWM596
#=GS A0A0E3NLQ6/1-72  DE Probable transcription termination protein NusA
#=GS A0A0E3NLQ6/1-72  DR ORG; Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina; Methanosarcina sp. WWM596; 
#=GS A0A2A2HUN5/1-72  AC A0A2A2HUN5
#=GS A0A2A2HUN5/1-72  OS Methanosarcina spelaei
#=GS A0A2A2HUN5/1-72  DE Probable transcription termination protein NusA
#=GS A0A2A2HUN5/1-72  DR ORG; Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina; Methanosarcina spelaei; 
#=GS A0A0E3WWA6/1-72  AC A0A0E3WWA6
#=GS A0A0E3WWA6/1-72  OS Methanosarcina barkeri 3
#=GS A0A0E3WWA6/1-72  DE Probable transcription termination protein NusA
#=GS A0A0E3WWA6/1-72  DR ORG; Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina; Methanosarcina barkeri; 
#=GS P29157/2-73      AC P29157
#=GS P29157/2-73      OS Thermococcus celer
#=GS P29157/2-73      DE Probable transcription termination protein NusA
#=GS P29157/2-73      DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus; Thermococcus celer; 
#=GS A0A142CXD6/2-73  AC A0A142CXD6
#=GS A0A142CXD6/2-73  OS Thermococcus peptonophilus
#=GS A0A142CXD6/2-73  DE Probable transcription termination protein NusA
#=GS A0A142CXD6/2-73  DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus; Thermococcus peptonophilus; 
#=GS G7VB77/1-73      AC G7VB77
#=GS G7VB77/1-73      OS Pyrobaculum ferrireducens
#=GS G7VB77/1-73      DE Probable transcription termination protein NusA
#=GS G7VB77/1-73      DR ORG; Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Pyrobaculum; Pyrobaculum ferrireducens; 
#=GS A3MXZ3/1-73      AC A3MXZ3
#=GS A3MXZ3/1-73      OS Pyrobaculum calidifontis JCM 11548
#=GS A3MXZ3/1-73      DE Probable transcription termination protein NusA
#=GS A3MXZ3/1-73      DR ORG; Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Pyrobaculum; Pyrobaculum calidifontis; 
#=GS A0A218P4J0/2-73  AC A0A218P4J0
#=GS A0A218P4J0/2-73  OS Thermococcus celer Vu 13 = JCM 8558
#=GS A0A218P4J0/2-73  DE Probable transcription termination protein NusA
#=GS A0A218P4J0/2-73  DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus; Thermococcus celer; 
#=GS A0A3M6K912/1-75  AC A0A3M6K912
#=GS A0A3M6K912/1-75  OS Nitrosopumilus sp.
#=GS A0A3M6K912/1-75  DE Probable transcription termination protein NusA
#=GS A0A3M6K912/1-75  DR ORG; Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus; Nitrosopumilus sp.; 
#=GS F3KKS3/1-75      AC F3KKS3
#=GS F3KKS3/1-75      OS Candidatus Nitrosarchaeum limnium SFB1
#=GS F3KKS3/1-75      DE Probable transcription termination protein NusA
#=GS F3KKS3/1-75      DR ORG; Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosarchaeum; Candidatus Nitrosarchaeum limnium; 
#=GS A0A371QWM7/1-73  AC A0A371QWM7
#=GS A0A371QWM7/1-73  OS Pyrobaculum aerophilum
#=GS A0A371QWM7/1-73  DE Probable transcription termination protein NusA
#=GS A0A371QWM7/1-73  DR ORG; Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Pyrobaculum; Pyrobaculum aerophilum; 
#=GS P0CW99/1-71      AC P0CW99
#=GS P0CW99/1-71      OS Halobacterium salinarum NRC-1
#=GS P0CW99/1-71      DE Probable transcription termination protein NusA
#=GS P0CW99/1-71      DR ORG; Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium; Halobacterium salinarum; 
#=GF SQ 29
B1L737/4-81              -RRKVTIAPEQLRYIKLFQDMLGVSPRDVVEDKEENRLIFVVEKGDLGRAVGRGGRKLKAMKRFLKGDLDYDIEVVEFD
Q8TRC0/8-80              VLGEIRLTAESIQYIALFENMTRAKILDCIPEE--ERLVYVVKQGDMGLAIGKNGENINRVKKALDK----PIELVEYS
Q5JE36/2-73              ---PLKLNTDQIKYIALFESMTGATVLDCLIDTNRNRLIYVIKKGEMGLALGKKGANVKRVQGMLGK----EIELIEHS
A9A465/1-75              MTQSIKLTTDQMRMMSLFQNVTGATARDCVEDEKQDRVIFVVNTGKMGLAIGKGGMHIKSLQNIVKR----NVELVEFD
Q8ZYQ5/1-73              -MPDIRLTEEEIRYATLFESITGVTPIDVVIDPEYSRIIYVVQKNQAAIAVGKGGSNVKMLRQIVGK----DVEVVE-A
B0R8D2/1-71              --MTIRLSDEARQLIAVFETETDATAVDCLPDD--DRVVYVVTAGEMGAAIGDGGSRVDALEATLGR----SVVLVEDA
A0A0J9EAR4/1-75          MAQSIKLTTDQMRMMSLFQNVTGATARDCVEDEKQDRVIFVVNTGKMGLAIGKGGVHIKSLQNIVKR----NVELVEFD
S2ERI7/1-75              MTQSIKLTTDQMRMMSLFQNVTGATARDCVDDEKHDRVIFVVNTGKMGLAIGKGGIHIKSLQNIVKK----TVELVEFD
A0A2Z2HQT5/1-75          MAQSIKLSTDQMRMMSLFQNVTGAVARDCIEDEKQNRVIFVVNTGKMGLAIGKGGMHIKSLQNMVKR----NVELVEFD
A0A368B077/1-75          MAQSIKLSTDQMRMMSLFQNVTGAVARDCIEDEKQNRVIFVVNTGKMGLAIGKGGMHIKSLQNMVKR----NVELVEFD
I3D428/1-75              MTQSIKLTTDQMRMMSLFQNVTGATARDCVEDEKQDRVIFVVNSGKMGLAIGKGGIHIKSLQNIVKR----NVELVEFD
A0A2G4JFI9/1-75          MTQSIKLSTDQMRMMSLFQNVTGATARDCVEDEKQDRVIFVVNTGKMGLAIGKGGIHIKSLQNIVKK----NVELVEFD
A0A0R2P2H6/1-75          MMQAIKLSTDQMRMMSLFQNVTGAVARDCIEDEKQDRVIFVVNTGKMGLAIGKGGMHIKSLQNMVKR----NVELVEFD
A0A0R2P3V5/1-75          MMQAIKLSTDQMRMMSLFQNVTGAVARDCIEDEKQDRVIFVVNTGKMGLAIGKGGMHIKSLQNMVKR----NVELVEFD
K0BAN6/1-75              MTQSIKLTTDQMRMMSLFQNVTGATARDCVEDEKQDRVIFVVNTGKMGLAIGKGGIHIKSLQNIVKR----NVELVEFD
A0A0E3L629/1-72          -MGEIKLTANTIQYIALFENMTRAKILDCIIEE--ERLVCVVKQGDMGLAIGKSGENINRVKKALDK----PIELVEYS
A0A0E3NRK3/1-72          -MGEIRLTAESIQYIALFENMTRAKILDCIPEE--ERLVYVVKQGDMGLAIGKNGEHINRVKKALDK----PIELVEYS
A0A0E3NLQ6/1-72          -MGEIRLTAESIQYIALFENMTRAKILDCIPEE--ERLVYVVKQGDMGLAIGKNGEHINRVKKALDK----PIELVEYS
A0A2A2HUN5/1-72          -MGEIRLTAESIQYIALFENMTRAKILDCIPEE--ERLVYVVKQGDMGLAIGRNGENINRVKKTLDK----PIELVEYS
A0A0E3WWA6/1-72          -MGEIRLTAESIQYIALFENMTRAKILDCIPEE--ERLVYVVKQGDMGLAIGRNGENINRVKKTLDK----PIELVEYS
P29157/2-73              ---PLKLNTDQIKFIALFESMTGATVLDCLIDDRRNRLIFVIKKGEMGLALGKKGANVKRVQNMIGK----EIEVIEHS
A0A142CXD6/2-73          ---PLKLNTDQIKYIALFESMTGATVLDCLIDTNRNRLIYVIKKGEMGLALGKKGANVKRVQGMLGK----EIELIEHS
G7VB77/1-73              -MPDIRLTEEEIRYATLFESITGVTPIDVVIDPEYSRIIYVVQKNQAAIAVGRGGSNVKMLRQIVGK----DVEIVE-S
A3MXZ3/1-73              -MPDIRLTEDEIRYATLFESITGVTPIDVVVDHEYSRIIFVVQKNQAALAVGKGGANVKMLRQIIGK----DVEVVE-A
A0A218P4J0/2-73          ---PLKLNTDQIKFIALFESMTGATVLDCLIDDRRNRLIFVIKKGEMGLALGKKGANVKRVQNMIGK----EIEVIEHS
A0A3M6K912/1-75          MTQSIKLTTDQMRMMSLFQNVTGATARDCVEDEKQDRVIFVVNTGKMGLAIGKGGMHIKSLQNIVKR----NVELVEFD
F3KKS3/1-75              MTQSIKLTTDQMRMMSLFQNVTGATARDCVDDEKHDRVIFVVNTGKMGLAIGKGGIHIKSLQNIVKK----TVELVEFD
A0A371QWM7/1-73          -MPDIRLTEEEIRYATLFESITGVTPIDVVIDPEYSRIIYVVQKNQAAIAVGKGGSNVKMLRQIVGK----DVEVVE-A
P0CW99/1-71              --MTIRLSDEARQLIAVFETETDATAVDCLPDD--DRVVYVVTAGEMGAAIGDGGSRVDALEATLGR----SVVLVEDA
#=GC scorecons           1223768546456455896558675449663752259677984475676969759356646544646000047768935
#=GC scorecons_70        ____***__*______***__*_*___**__*____*_****__*_*******_*__**_*_____*_____*****__
#=GC scorecons_80        ____*_*_________**___*_____*___*____*_*_**__*__*_*_*__*__________________*_**__
#=GC scorecons_90        ______*_________**___*_____*________*___*________*_*__*_____________________*__
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