# STOCKHOLM 1.0
#=GF ID 3.30.160.20/FF/000068
#=GF DE RNA polymerase II C-terminal domain phosphatase-like 1
#=GF AC 3.30.160.20/FF/000068
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 37.540
#=GS Q6H5U8/699-780      AC Q6H5U8
#=GS Q6H5U8/699-780      OS Oryza sativa Japonica Group
#=GS Q6H5U8/699-780      DE Double-stranded RNA-binding domain (DsRBD)-containing protein-like
#=GS Q6H5U8/699-780      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; 
#=GS A0A1D6HEF4/642-719  AC A0A1D6HEF4
#=GS A0A1D6HEF4/642-719  OS Zea mays
#=GS A0A1D6HEF4/642-719  DE RNA polymerase II C-terminal domain phosphatase-like 1
#=GS A0A1D6HEF4/642-719  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS A0A2T7F9J4/706-783  AC A0A2T7F9J4
#=GS A0A2T7F9J4/706-783  OS Panicum hallii var. hallii
#=GS A0A2T7F9J4/706-783  DE Uncharacterized protein
#=GS A0A2T7F9J4/706-783  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Paniceae; Panicinae; Panicum; Panicum sect. Panicum; Panicum hallii; Panicum hallii var. hallii; 
#=GS C5XY97/699-774      AC C5XY97
#=GS C5XY97/699-774      OS Sorghum bicolor
#=GS C5XY97/699-774      DE Uncharacterized protein
#=GS C5XY97/699-774      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Sorghinae; Sorghum; Sorghum bicolor; 
#=GS K3YPS1/697-774      AC K3YPS1
#=GS K3YPS1/697-774      OS Setaria italica
#=GS K3YPS1/697-774      DE Uncharacterized protein
#=GS K3YPS1/697-774      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Paniceae; Cenchrinae; Setaria; Setaria italica; 
#=GS A0A0D9YVH4/700-780  AC A0A0D9YVH4
#=GS A0A0D9YVH4/700-780  OS Oryza glumipatula
#=GS A0A0D9YVH4/700-780  DE Uncharacterized protein
#=GS A0A0D9YVH4/700-780  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza glumipatula; 
#=GS A0A0E0NI97/699-780  AC A0A0E0NI97
#=GS A0A0E0NI97/699-780  OS Oryza rufipogon
#=GS A0A0E0NI97/699-780  DE Uncharacterized protein
#=GS A0A0E0NI97/699-780  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza rufipogon; 
#=GS A0A0E0CNX6/687-768  AC A0A0E0CNX6
#=GS A0A0E0CNX6/687-768  OS Oryza meridionalis
#=GS A0A0E0CNX6/687-768  DE Uncharacterized protein
#=GS A0A0E0CNX6/687-768  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza meridionalis; 
#=GS A0A0D3F819/700-780  AC A0A0D3F819
#=GS A0A0D3F819/700-780  OS Oryza barthii
#=GS A0A0D3F819/700-780  DE Uncharacterized protein
#=GS A0A0D3F819/700-780  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza barthii; 
#=GS A0A0E0K2U5/700-780  AC A0A0E0K2U5
#=GS A0A0E0K2U5/700-780  OS Oryza punctata
#=GS A0A0E0K2U5/700-780  DE Uncharacterized protein
#=GS A0A0E0K2U5/700-780  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza punctata; 
#=GS A0A0E0GA89/700-780  AC A0A0E0GA89
#=GS A0A0E0GA89/700-780  OS Oryza sativa f. spontanea
#=GS A0A0E0GA89/700-780  DE Uncharacterized protein
#=GS A0A0E0GA89/700-780  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; Oryza sativa f. spontanea; 
#=GS A0A0D3F820/728-808  AC A0A0D3F820
#=GS A0A0D3F820/728-808  OS Oryza barthii
#=GS A0A0D3F820/728-808  DE Uncharacterized protein
#=GS A0A0D3F820/728-808  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza barthii; 
#=GS B8AFU7/696-776      AC B8AFU7
#=GS B8AFU7/696-776      OS Oryza sativa Indica Group
#=GS B8AFU7/696-776      DE Uncharacterized protein
#=GS B8AFU7/696-776      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; 
#=GS A0A0E0CNX5/687-768  AC A0A0E0CNX5
#=GS A0A0E0CNX5/687-768  OS Oryza meridionalis
#=GS A0A0E0CNX5/687-768  DE Uncharacterized protein
#=GS A0A0E0CNX5/687-768  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza meridionalis; 
#=GS A0A0E0GA90/700-780  AC A0A0E0GA90
#=GS A0A0E0GA90/700-780  OS Oryza sativa f. spontanea
#=GS A0A0E0GA90/700-780  DE Uncharacterized protein
#=GS A0A0E0GA90/700-780  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; Oryza sativa f. spontanea; 
#=GS A0A1D6HEE8/696-775  AC A0A1D6HEE8
#=GS A0A1D6HEE8/696-775  OS Zea mays
#=GS A0A1D6HEE8/696-775  DE RNA polymerase II C-terminal domain phosphatase-like 1
#=GS A0A1D6HEE8/696-775  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS A0A1D6HEE3/696-773  AC A0A1D6HEE3
#=GS A0A1D6HEE3/696-773  OS Zea mays
#=GS A0A1D6HEE3/696-773  DE RNA polymerase II C-terminal domain phosphatase-like 1
#=GS A0A1D6HEE3/696-773  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS A0A1D6HEF2/680-757  AC A0A1D6HEF2
#=GS A0A1D6HEF2/680-757  OS Zea mays
#=GS A0A1D6HEF2/680-757  DE RNA polymerase II C-terminal domain phosphatase-like 1
#=GS A0A1D6HEF2/680-757  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS A0A1D6HEF3/680-757  AC A0A1D6HEF3
#=GS A0A1D6HEF3/680-757  OS Zea mays
#=GS A0A1D6HEF3/680-757  DE RNA polymerase II C-terminal domain phosphatase-like 1
#=GS A0A1D6HEF3/680-757  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS A0A1D6HEE5/696-773  AC A0A1D6HEE5
#=GS A0A1D6HEE5/696-773  OS Zea mays
#=GS A0A1D6HEE5/696-773  DE RNA polymerase II C-terminal domain phosphatase-like 1
#=GS A0A1D6HEE5/696-773  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS A0A1D6HEE7/696-773  AC A0A1D6HEE7
#=GS A0A1D6HEE7/696-773  OS Zea mays
#=GS A0A1D6HEE7/696-773  DE RNA polymerase II C-terminal domain phosphatase-like 1
#=GS A0A1D6HEE7/696-773  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS A0A1D6HEF6/408-485  AC A0A1D6HEF6
#=GS A0A1D6HEF6/408-485  OS Zea mays
#=GS A0A1D6HEF6/408-485  DE RNA polymerase II C-terminal domain phosphatase-like 1
#=GS A0A1D6HEF6/408-485  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS A0A1D6HEE4/696-773  AC A0A1D6HEE4
#=GS A0A1D6HEE4/696-773  OS Zea mays
#=GS A0A1D6HEE4/696-773  DE RNA polymerase II C-terminal domain phosphatase-like 1
#=GS A0A1D6HEE4/696-773  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS A0A2T7F9J2/706-783  AC A0A2T7F9J2
#=GS A0A2T7F9J2/706-783  OS Panicum hallii var. hallii
#=GS A0A2T7F9J2/706-783  DE Uncharacterized protein
#=GS A0A2T7F9J2/706-783  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Paniceae; Panicinae; Panicum; Panicum sect. Panicum; Panicum hallii; Panicum hallii var. hallii; 
#=GS A0A368PPD9/699-776  AC A0A368PPD9
#=GS A0A368PPD9/699-776  OS Setaria italica
#=GS A0A368PPD9/699-776  DE Uncharacterized protein
#=GS A0A368PPD9/699-776  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Paniceae; Cenchrinae; Setaria; Setaria italica; 
#=GS K3YPQ1/697-774      AC K3YPQ1
#=GS K3YPQ1/697-774      OS Setaria italica
#=GS K3YPQ1/697-774      DE Uncharacterized protein
#=GS K3YPQ1/697-774      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Paniceae; Cenchrinae; Setaria; Setaria italica; 
#=GS A0A1D6Q5T6/678-756  AC A0A1D6Q5T6
#=GS A0A1D6Q5T6/678-756  OS Zea mays
#=GS A0A1D6Q5T6/678-756  DE RNA polymerase II C-terminal domain phosphatase-like 1
#=GS A0A1D6Q5T6/678-756  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS A0A1D6Q5S6/697-775  AC A0A1D6Q5S6
#=GS A0A1D6Q5S6/697-775  OS Zea mays
#=GS A0A1D6Q5S6/697-775  DE RNA polymerase II C-terminal domain phosphatase-like 1
#=GS A0A1D6Q5S6/697-775  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS K7UXF1/694-772      AC K7UXF1
#=GS K7UXF1/694-772      OS Zea mays
#=GS K7UXF1/694-772      DE RNA polymerase II C-terminal domain phosphatase-like 1
#=GS K7UXF1/694-772      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS A0A1D6Q5T8/694-772  AC A0A1D6Q5T8
#=GS A0A1D6Q5T8/694-772  OS Zea mays
#=GS A0A1D6Q5T8/694-772  DE RNA polymerase II C-terminal domain phosphatase-like 1
#=GS A0A1D6Q5T8/694-772  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS A0A1D6Q5S7/699-777  AC A0A1D6Q5S7
#=GS A0A1D6Q5S7/699-777  OS Zea mays
#=GS A0A1D6Q5S7/699-777  DE RNA polymerase II C-terminal domain phosphatase-like 1
#=GS A0A1D6Q5S7/699-777  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS A0A1D6Q5T3/694-773  AC A0A1D6Q5T3
#=GS A0A1D6Q5T3/694-773  OS Zea mays
#=GS A0A1D6Q5T3/694-773  DE RNA polymerase II C-terminal domain phosphatase-like 1
#=GS A0A1D6Q5T3/694-773  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GF SQ 32
Q6H5U8/699-780              SAGILEEIAMKCGSKVEYRSALCDTADLQFSIEVWIVGEKVGEGIGRTRKEAQCQAAEISLRNL--AN----KYLSSDPNKMTDMKEN-
A0A1D6HEF4/642-719          ----LEGIAVKCGSKVEYRSTLCDTAELQFSIEVWIVGEKFGEGIGRTRREAQRQAAEMSLRNL--AN----KYLSSDPNKLTDMKQD-
A0A2T7F9J4/706-783          ----LEGIALKCGSKVEYRSTLCDTAELQFSIEVWIVGEKIGEGIGRTRREAQRQAAEMSLRNL--AN----KYLSSDPNKMTDLKEN-
C5XY97/699-774              ------GIALKCGSKVEYRSTLCDTAELQFSIEVWIVGEKVGEGIGRTRREAQHKAAEMSLRNL--AN----KYLSSDPNKLTDMKEN-
K3YPS1/697-774              ----LEGIALKCGSKVEYRSTLCDTAELQFSIEVWIVGEKIGEGIGRTRREAQRQAAEMSLRNL--AN----KYLSSDPNKMTDLKEN-
A0A0D9YVH4/700-780          SAGILEEIAMKCGSKVEYRSALCDTADLQFSIEVWIVGEKVGEGIGRTRKEAQCQAAEISLRNL--AN----KYLSSDPNKMTGMKE--
A0A0E0NI97/699-780          SAGILEEIAMKCGSKVEYRSALCDTADLQFSIEVWIVGEKVGEGIGRTRKEAQCQAAEISLRNL--AN----KYLSSDPNKMTDMKEN-
A0A0E0CNX6/687-768          SAGILEEIAMKCGSKVEYRSALCDIADLHFSIEVWIVGEKVGEGIGRTRKEAQCQAAEISLRNL--AN----KYLSSDPNKMTDMKEN-
A0A0D3F819/700-780          SAGILEEIAMKCGSKVEYRSALCDTADLQFSIEVWIVGEKVGEGIGRTRKEAQCQAAEISLRNL--AN----KYLSSDPNKMTGMKE--
A0A0E0K2U5/700-780          SAGILEEIALKCGSKVEYRSALCDTADLQFSIEVWIVGEKVGEGIGRTRKEAQCQAAEISLRNL--AN----KYLSSDPNKMIDMKE--
A0A0E0GA89/700-780          SAGILEEIAMKCGSKVEYRSALCDTADLQFSIEVWIVGEKVGEGIGRTRKEAQCQAAEISLRNL--AN----KYLSSDPNKMTGMKE--
A0A0D3F820/728-808          SAGILEEIAMKCGSKVEYRSALCDTADLQFSIEVWIVGEKVGEGIGRTRKEAQCQAAEISLRNL--AN----KYLSSDPNKMTGMKE--
B8AFU7/696-776              SAGILEEIAMKCGSKVEYRSALCDTADLQFSIEVWIVGEKVGEGIGRTRKEAQCQAAEISLRNL--AN----KYLSSDPNKMTGMKE--
A0A0E0CNX5/687-768          SAGILEEIAMKCGSKVEYRSALCDIADLHFSIEVWIVGEKVGEGIGRTRKEAQCQAAEISLRNL--AN----KYLSSDPNKMTDMKEN-
A0A0E0GA90/700-780          SAGILEEIAMKCGSKVEYRSALCDTADLQFSIEVWIVGEKVGEGIGRTRKEAQCQAAEISLRNL--AN----KYLSSDPNKMTGMKE--
A0A1D6HEE8/696-775          ----LEGIAVKCGSKVEYRSTLCDTAELQFSIEVWIVGEKFGEGIGRTRREAQRQAAEMSLRNLAIAD----KYLSSDPNKLTDMKQD-
A0A1D6HEE3/696-773          ----LEGIAVKCGSKVEYRSTLCDTAELQFSIEVWIVGEKFGEGIGRTRREAQRQAAEMSLRNL--AN----KYLSSDPNKLTDMKQD-
A0A1D6HEF2/680-757          ----LEGIAVKCGSKVEYRSTLCDTAELQFSIEVWIVGEKFGEGIGRTRREAQRQAAEMSLRNL--AN----KYLSSDPNKLTDMKQD-
A0A1D6HEF3/680-757          ----LEGIAVKCGSKVEYRSTLCDTAELQFSIEVWIVGEKFGEGIGRTRREAQRQAAEMSLRNL--AN----KYLSSDPNKLTDMKQD-
A0A1D6HEE5/696-773          ----LEGIAVKCGSKVEYRSTLCDTAELQFSIEVWIVGEKFGEGIGRTRREAQRQAAEMSLRNL--AN----KYLSSDPNKLTDMKQD-
A0A1D6HEE7/696-773          ----LEGIAVKCGSKVEYRSTLCDTAELQFSIEVWIVGEKFGEGIGRTRREAQRQAAEMSLRNL--AN----KYLSSDPNKLTDMKQD-
A0A1D6HEF6/408-485          ----LEGIAVKCGSKVEYRSTLCDTAELQFSIEVWIVGEKFGEGIGRTRREAQRQAAEMSLRNL--AN----KYLSSDPNKLTDMKQD-
A0A1D6HEE4/696-773          ----LEGIAVKCGSKVEYRSTLCDTAELQFSIEVWIVGEKFGEGIGRTRREAQRQAAEMSLRNL--AN----KYLSSDPNKLTDMKQD-
A0A2T7F9J2/706-783          ----LEGIALKCGSKVEYRSTLCDTAELQFSIEVWIVGEKIGEGIGRTRREAQRQAAEMSLRNL--AN----KYLSSDPNKMTDLKEN-
A0A368PPD9/699-776          ----LEGIALKCGSKVEYRSTLCDTAELQFSIEVWIVGEKIGEGIGRTRREAQRQAAEMSLRNL--AN----KYLSSDPNKMTDLKEN-
K3YPQ1/697-774              ----LEGIALKCGSKVEYRSTLCDTAELQFSIEVWIVGEKIGEGIGRTRREAQRQAAEMSLRNL--AN----KYLSSDPNKMTDLKEN-
A0A1D6Q5T6/678-756          ----LEGIALKCGSKVEYKSALCDTAELQFSIEVWIVGEKVGEGIGRTRREAQRQAAEMSLRNL--AN----KYLSSDPNKLSDMKEND
A0A1D6Q5S6/697-775          ----LEGIALKCGSKVEYKSALCDTAELQFSIEVWIVGEKVGEGIGRTRREAQRQAAEMSLRNL--AN----KYLSSDPNKLSDMKEND
K7UXF1/694-772              ----LEGIALKCGSKVEYKSALCDTAELQFSIEVWIVGEKVGEGIGRTRREAQRQAAEMSLRNL--AN----KYLSSDPNKLSDMKEND
A0A1D6Q5T8/694-772          ----LEGIALKCGSKVEYKSALCDTAELQFSIEVWIVGEKVGEGIGRTRREAQRQAAEMSLRNL--AN----KYLSSDPNKLSDMKEND
A0A1D6Q5S7/699-777          ----LEGIALKCGSKVEYKSALCDTAELQFSIEVWIVGEKVGEGIGRTRREAQRQAAEMSLRNL--AN----KYLSSDPNKLSDMKEND
A0A1D6Q5T3/694-773          ----LEGIALKCGSKVEYKSALCDTAELQFSIEVWIVGEKVGEGIGRTRREAQRQAAEMSLRNL--ANLLADKYLSSDPNKLSDMK---
#=GC scorecons              11118869959999999979699989798999999999996999999997999589996999990098000099999999966789630
#=GC scorecons_70           ____*****_******************************_************_**********__**____***************__
#=GC scorecons_80           ____**_**_**********_*******************_************_****_*****__**____*********___**___
#=GC scorecons_90           ____**_**_********_*_*****_*************_********_***_****_*****__**____*********____*___
//