# STOCKHOLM 1.0
#=GF ID 3.30.1540.20/FF/000007
#=GF DE DNA mismatch repair protein PMS1
#=GF AC 3.30.1540.20/FF/000007
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 91.248
#=GS P14242/666-716_822-867        AC P14242
#=GS P14242/666-716_822-867        OS Saccharomyces cerevisiae S288C
#=GS P14242/666-716_822-867        DE DNA mismatch repair protein PMS1
#=GS P14242/666-716_822-867        DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS P14242/666-716_822-867        DR GO; GO:0000710; GO:0005515; GO:0005524; GO:0005634; GO:0005737; GO:0006298; GO:0016887; GO:0032389; 
#=GS G5EFG5/612-657_759-799        AC G5EFG5
#=GS G5EFG5/612-657_759-799        OS Caenorhabditis elegans
#=GS G5EFG5/612-657_759-799        DE PMS (Post Meiotic Segregation) family
#=GS G5EFG5/612-657_759-799        DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS G5EFG5/612-657_759-799        DR GO; GO:0005515; 
#=GS Q38D26/595-634_728-780        AC Q38D26
#=GS Q38D26/595-634_728-780        OS Trypanosoma brucei brucei TREU927
#=GS Q38D26/595-634_728-780        DE Mismatch repair protein PMS1, putative
#=GS Q38D26/595-634_728-780        DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanozoon; Trypanosoma brucei; Trypanosoma brucei brucei; 
#=GS Q38D26/595-634_728-780        DR GO; GO:0005634; 
#=GS D6WH35/760-852                AC D6WH35
#=GS D6WH35/760-852                OS Tribolium castaneum
#=GS D6WH35/760-852                DE Mismatch repair endonuclease PMS2-like Protein
#=GS D6WH35/760-852                DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga; Cucujiformia; Tenebrionoidea; Tenebrionidae; Tribolium; Tribolium castaneum; 
#=GS A8IT98/6-42_145-179           AC A8IT98
#=GS A8IT98/6-42_145-179           OS Chlamydomonas reinhardtii
#=GS A8IT98/6-42_145-179           DE Predicted protein
#=GS A8IT98/6-42_145-179           DR ORG; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas; Chlamydomonas reinhardtii; 
#=GS B8CFF0/709-748_858-910        AC B8CFF0
#=GS B8CFF0/709-748_858-910        OS Thalassiosira pseudonana
#=GS B8CFF0/709-748_858-910        DE Uncharacterized protein
#=GS B8CFF0/709-748_858-910        DR ORG; Eukaryota; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira; Thalassiosira pseudonana; 
#=GS A0A0R4IVC5/285-321_422-458    AC A0A0R4IVC5
#=GS A0A0R4IVC5/285-321_422-458    OS Danio rerio
#=GS A0A0R4IVC5/285-321_422-458    DE PMS1 homolog 2, mismatch repair system component
#=GS A0A0R4IVC5/285-321_422-458    DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Otomorpha; Ostariophysi; Cypriniphysae; Cypriniformes; Cyprinoidei; Cyprinidae; Danio; Danio rerio; 
#=GS A0A3P3ZGR4/648-688_782-833    AC A0A3P3ZGR4
#=GS A0A3P3ZGR4/648-688_782-833    OS Leishmania braziliensis MHOM/BR/75/M2904
#=GS A0A3P3ZGR4/648-688_782-833    DE Mismatch_repair_protein_PMS1
#=GS A0A3P3ZGR4/648-688_782-833    DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Viannia; Leishmania braziliensis species complex; Leishmania braziliensis; 
#=GS C3Z7T8/39-75_176-211          AC C3Z7T8
#=GS C3Z7T8/39-75_176-211          OS Branchiostoma floridae
#=GS C3Z7T8/39-75_176-211          DE Uncharacterized protein
#=GS C3Z7T8/39-75_176-211          DR ORG; Eukaryota; Metazoa; Chordata; Cephalochordata; Branchiostomidae; Branchiostoma; Branchiostoma floridae; 
#=GS Q0UQA6/804-856_969-1011       AC Q0UQA6
#=GS Q0UQA6/804-856_969-1011       OS Parastagonospora nodorum SN15
#=GS Q0UQA6/804-856_969-1011       DE Uncharacterized protein
#=GS Q0UQA6/804-856_969-1011       DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes; Pleosporomycetidae; Pleosporales; Pleosporineae; Phaeosphaeriaceae; Parastagonospora; Parastagonospora nodorum; 
#=GS A4IB67/648-688_782-835        AC A4IB67
#=GS A4IB67/648-688_782-835        OS Leishmania infantum
#=GS A4IB67/648-688_782-835        DE Mismatch_repair_protein_PMS1_-_putative
#=GS A4IB67/648-688_782-835        DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Leishmania; Leishmania donovani species complex; Leishmania infantum; 
#=GS Q9BLY2/595-634_728-780        AC Q9BLY2
#=GS Q9BLY2/595-634_728-780        OS Trypanosoma brucei
#=GS Q9BLY2/595-634_728-780        DE Putative mismatch repair protein PMS1
#=GS Q9BLY2/595-634_728-780        DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanozoon; Trypanosoma brucei; 
#=GS Q9BLY2/595-634_728-780        DR GO; GO:0005634; 
#=GS E9AEY8/648-688_782-832        AC E9AEY8
#=GS E9AEY8/648-688_782-832        OS Leishmania major
#=GS E9AEY8/648-688_782-832        DE Mismatch repair protein
#=GS E9AEY8/648-688_782-832        DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Leishmania; Leishmania major species complex; Leishmania major; 
#=GS A0A088S068/648-688_782-833    AC A0A088S068
#=GS A0A088S068/648-688_782-833    OS Leishmania panamensis
#=GS A0A088S068/648-688_782-833    DE Mismatch repair protein PMS1, putative
#=GS A0A088S068/648-688_782-833    DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Viannia; Leishmania guyanensis species complex; Leishmania panamensis; 
#=GS E9BS42/648-688_782-835        AC E9BS42
#=GS E9BS42/648-688_782-835        OS Leishmania donovani BPK282A1
#=GS E9BS42/648-688_782-835        DE Mismatch repair protein PMS1, putative
#=GS E9BS42/648-688_782-835        DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Leishmania; Leishmania donovani species complex; Leishmania donovani; 
#=GS A0A1E1J5R0/648-688_782-833    AC A0A1E1J5R0
#=GS A0A1E1J5R0/648-688_782-833    OS Leishmania guyanensis
#=GS A0A1E1J5R0/648-688_782-833    DE Mismatch repair protein PMS1, putative,mismatch repair protein
#=GS A0A1E1J5R0/648-688_782-833    DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Viannia; Leishmania guyanensis species complex; Leishmania guyanensis; 
#=GS A0A178BDW3/849-901_1014-1054  AC A0A178BDW3
#=GS A0A178BDW3/849-901_1014-1054  OS Stagonospora sp. SRC1lsM3a
#=GS A0A178BDW3/849-901_1014-1054  DE DNA mismatch repair protein MutL
#=GS A0A178BDW3/849-901_1014-1054  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes; Pleosporomycetidae; Pleosporales; Massarineae; Massarinaceae; Stagonospora; Stagonospora sp. SRC1lsM3a; 
#=GS J8Q2T9/672-722_828-873        AC J8Q2T9
#=GS J8Q2T9/672-722_828-873        OS Saccharomyces arboricola H-6
#=GS J8Q2T9/672-722_828-873        DE Pms1p
#=GS J8Q2T9/672-722_828-873        DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces arboricola; 
#=GS H0GMK9/666-716_822-867        AC H0GMK9
#=GS H0GMK9/666-716_822-867        OS Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7
#=GS H0GMK9/666-716_822-867        DE Pms1p
#=GS H0GMK9/666-716_822-867        DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae x Saccharomyces kudriavzevii; 
#=GS A0A0L8VIL3/666-716_822-867    AC A0A0L8VIL3
#=GS A0A0L8VIL3/666-716_822-867    OS Saccharomyces sp. 'boulardii'
#=GS A0A0L8VIL3/666-716_822-867    DE PMS1p ATP-binding protein required for mismatch repair
#=GS A0A0L8VIL3/666-716_822-867    DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces sp. 'boulardii'; 
#=GS A0A364N7Z5/854-906_1019-1061  AC A0A364N7Z5
#=GS A0A364N7Z5/854-906_1019-1061  OS Stemphylium lycopersici
#=GS A0A364N7Z5/854-906_1019-1061  DE Dna mismatch repair protein pms1
#=GS A0A364N7Z5/854-906_1019-1061  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes; Pleosporomycetidae; Pleosporales; Pleosporineae; Pleosporaceae; Stemphylium; Stemphylium lycopersici; 
#=GS A0A2G5TGU5/608-647_743-791    AC A0A2G5TGU5
#=GS A0A2G5TGU5/608-647_743-791    OS Caenorhabditis nigoni
#=GS A0A2G5TGU5/608-647_743-791    DE Uncharacterized protein
#=GS A0A2G5TGU5/608-647_743-791    DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS A8Y473/649-688_784-832        AC A8Y473
#=GS A8Y473/649-688_784-832        OS Caenorhabditis briggsae
#=GS A8Y473/649-688_784-832        DE Protein CBR-PMS-2
#=GS A8Y473/649-688_784-832        DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS A4HMI7/648-688_782-833        AC A4HMI7
#=GS A4HMI7/648-688_782-833        OS Leishmania braziliensis
#=GS A4HMI7/648-688_782-833        DE Mismatch repair protein
#=GS A4HMI7/648-688_782-833        DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Viannia; Leishmania braziliensis species complex; Leishmania braziliensis; 
#=GS B3LNU1/666-716_822-867        AC B3LNU1
#=GS B3LNU1/666-716_822-867        OS Saccharomyces cerevisiae RM11-1a
#=GS B3LNU1/666-716_822-867        DE DNA mismatch repair protein PMS1
#=GS B3LNU1/666-716_822-867        DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS N1P4G0/666-716_822-867        AC N1P4G0
#=GS N1P4G0/666-716_822-867        OS Saccharomyces cerevisiae CEN.PK113-7D
#=GS N1P4G0/666-716_822-867        DE Pms1p
#=GS N1P4G0/666-716_822-867        DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS A6ZRZ8/666-716_822-867        AC A6ZRZ8
#=GS A6ZRZ8/666-716_822-867        OS Saccharomyces cerevisiae YJM789
#=GS A6ZRZ8/666-716_822-867        DE Postmeiotic segregation protein
#=GS A6ZRZ8/666-716_822-867        DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS G2WM22/670-720_825-870        AC G2WM22
#=GS G2WM22/670-720_825-870        OS Saccharomyces cerevisiae Kyokai no. 7
#=GS G2WM22/670-720_825-870        DE K7_Pms1p
#=GS G2WM22/670-720_825-870        DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS C8ZGE8/666-716_822-867        AC C8ZGE8
#=GS C8ZGE8/666-716_822-867        OS Saccharomyces cerevisiae EC1118
#=GS C8ZGE8/666-716_822-867        DE Pms1p
#=GS C8ZGE8/666-716_822-867        DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS C7GUN2/670-720_826-871        AC C7GUN2
#=GS C7GUN2/670-720_826-871        OS Saccharomyces cerevisiae JAY291
#=GS C7GUN2/670-720_826-871        DE Pms1p
#=GS C7GUN2/670-720_826-871        DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GF SQ 30
P14242/666-716_822-867                VSKNDFKKMEVVGQFNLGFIIVTRK---VDNKYDLFIV-DQHASDEKYNFETL---QA------MIGKPLNKKTMTRVVHNLSELDKPWNCPHGRPTMRHLMELRDWSSF
G5EFG5/612-657_759-799                -TKDDFSKMKIIGQFNHGFIICRL-------RGHLFIV-DQHASDEKYNFERL---QS------MIGKPLNQREMTQIIRHLAKLDQPWNCPHGRPTIRHLASLP-----
Q38D26/595-634_728-780                -----FKNMVVHGQFNHGFIVTSL-------DDNIFVI-DQHAADEKGNYEHL---TKACRSSIMVGTMLSEKKMRSVVDRMGELEQPWNCPHGRPTVRHVSKISSLVS-
D6WH35/760-852                        ---IPLSKSMVFGKQDI--------------EEMLFMLQDSNHTMCRPSRIRAMFATRACRKSVMIGKPLSKSDMRRLVNHMGEIEQPWNCPHGRPTMRHLINLDLIQEE
A8IT98/6-42_145-179                   -------------QFNLGFILAAH-------GRDVFIV-DQHAADEKTTFERL---QR----SVAVGRPLDRPQMRRVLDRLAELRQPWNCPHGRPTMRH----------
B8CFF0/709-748_858-910                ------LRMSIIGQFNLGFILARTP------DHNLFIL-DQHACDEKYNFERLMFASRACRGSIMIGTALSHKEQMNILKKLDKTDIPWNCAHGRPTMSHIRNLKT----
A0A0R4IVC5/285-321_422-458            -------------QFNLGFIITKI-------KSDLFII-DQHATDEKYNFEML---QQ----NTVVGTALNTSEMKKLVLHMGEIEQPWNCPHGRPTMRHLA--------
A0A3P3ZGR4/648-688_782-833            -----FKEMRVIGQFNHGFIVATLP------NGDVFIV-DQHASDEKYNYERL---TKACRSSIMIGTPLTMKRMKLILERLGELDQPWNCPHGRPTLRLLCNIAELP--
C3Z7T8/39-75_176-211                  -------------QFNLGFIIARL-------GGDLFII-DQHATDEKYNFEML---QR----NTVIGTALNRGEMQQLLTHMGEIEQPWNCPHGRPTMRHL---------
Q0UQA6/804-856_969-1011               -TKPDFNEMRIIGQFNLGFIIAVRPPTTTSPTSDLFII-DQHASDEKYNFERL---------SAMIGKTLKTARMREIVRHMGSMDKPWSCPHGRPTMRHLFGLEKW---
A4IB67/648-688_782-835                -----FKEMRVIGQFNHGFIIAVLP------NGDVFVV-DQHASDEKYNYERL---TKACRSSIMIGTPLTVKRMKLILERLSQLDQPWNCPHGRPTLRLLCSIADLQRG
Q9BLY2/595-634_728-780                -----FKNMVVHGQFNHGFIVTSL-------DDNIFVI-DQHAADEKGNYEHL---TKACRSSIMVGTMLSEKKMRSVVDRMGELEQPWNCPHGRPTVRHVSKISSLVS-
E9AEY8/648-688_782-832                -----FKEMRVIGQFNHGFIIAVLP------NGDVFVV-DQHASDEKYNYERL---TKACRSSIMIGTPLTVKRMKLILERLSQLDQPWNCPHGRPTLRLLCNIVDL---
A0A088S068/648-688_782-833            -----FKEMRVIGQFNHGFILATLP------NGDVFVV-DQHASDEKYNYERL---TKACRSSIMIGTPLTMKRMKLILERLGELDQPWNCPHGRPTLRLLCNIAELP--
E9BS42/648-688_782-835                -----FKEMRVIGQFNHGFIIAVLP------NGDVFVV-DQHASDEKYNYERL---TKACRSSIMIGTPLTVKRMKLILERLSQLDQPWNCPHGRPTLRLLCSIADLQRG
A0A1E1J5R0/648-688_782-833            -----FKEMRVIGQFNHGFIVATLP------NGDVFVV-DQHASDEKYNYERL---TKACRSSIMIGTPLTMKRMKLILERLGELDQPWNCPHGRPTLRLLCNIAELP--
A0A178BDW3/849-901_1014-1054          -AKSDFNEMRIIGQFNLGFIIAVRPPTRTSPTSDVFII-DQHASDEKYNFERL---------SAMIGKTLKEARMTQIVRHMGSMDKPWSCPHGRPTMRHLFGLE-----
J8Q2T9/672-722_828-873                VSKDDFKKMEVVGQFNLGFIIVTRK---IGDKDDLFIV-DQHASDEKYNFETL---QA------MIGKPLNKKTMTRVVHNLSGLDKPWNCPHGRPTMRHLTELCDWNSF
H0GMK9/666-716_822-867                VSKNDFKKMEVVGQFNLGFIIVTRK---VDNKYDLFIV-DQHASDEKYNFETL---QA------MIGKPLNKKTMTRVVHNLSELDKPWNCPHGRPTMRHLMELRDWSSF
A0A0L8VIL3/666-716_822-867            VSKNDFKKMEVVGQFNLGFIIVTRK---VDNKYDLFIV-DQHASDEKYNFETL---QA------MIGKPLNKKTMTRVVHNLSELDKPWNCPHGRPTMRHLMELRDWSSF
A0A364N7Z5/854-906_1019-1061          -TKADFNEMRIIGQFNLGFIIAVRPPTSTSPTSDLFII-DQHASDEKYNFERF---------TAMIGKTLQPPRMKEIVRHMGSMDKPWSCPHGRPTMRHLFGLEKW---
A0A2G5TGU5/608-647_743-791            -----FNKMQIIGQFNHGFIICRL-------RGHLFIV-DQHASDEKYNFERL---SKACRKSVMIGKPLNHREMTRIIRHLSKLDQPWNCPHGRPTIRHLVSLP-----
A8Y473/649-688_784-832                -----FTKMQIIGQFNHGFIICRL-------RGHLFIV-DQHASDEKYNFERL---SKACRKSVMIGKPLNHREMTRIIRHLSKLDQPWNCPHGRPTIRHLVSLP-----
A4HMI7/648-688_782-833                -----FKEMRVIGQFNHGFIVATLP------NGDVFIV-DQHASDEKYNYERL---TKACRSSIMIGTPLTMKRMKLILERLGELDQPWNCPHGRPTLRLLCNIAELP--
B3LNU1/666-716_822-867                VSKNDFKKMEVVGQFNLGFIIVTRK---VDNKYDLFIV-DQHASDEKYNFETL---QA------MIGKPLNKKTMTRVVHNLSELDKPWNCPHGRPTMRHLMELRDWSSF
N1P4G0/666-716_822-867                VSKNDFKKMEVVGQFNLGFIIVTRK---VDNKYDLFIV-DQHASDEKYNFETL---QA------MIGKPLNKKTMTRVVHNLSELDKPWNCPHGRPTMRHLMELRDWSSF
A6ZRZ8/666-716_822-867                VSKNDFKKMEVVGQFNLGFIIVTRK---VDNKYDLFIV-DQHASDEKYNFETL---QA------MIGKPLNKKTMTRVVHNLSELDKPWNCPHGRPTMRHLMELRDWSSF
G2WM22/670-720_825-870                VSKNDFKKMEVVGQFNLGFIIVTRK---VDNKYDLFIV-DQHASDEKYNFETL---QA-----LMIGKPLNKKTMTRVVHNLSELDKPWNCPHGRPTMRHLMELRDWSS-
C8ZGE8/666-716_822-867                VSKNDFKKMEVVGQFNLGFIIVTRK---VDNKYDLFIV-DQHASDEKYNFETL---QA------MIGKPLNKKTMTRVVHNLSELDKPWNCPHGRPTMRHLMELRDWSSF
C7GUN2/670-720_826-871                VSKNDFKKMEVVGQFNLGFIIVTRK---VDNKYDLFIV-DQHASDEKYNFETL---QA------MIGKPLNKETMTRVVHNLSELDKPWNCPHGRPTMRHLMELRDWSSF
#=GC scorecons                        01111544635468885888643320000004366976098886888676857000331111327895694354844664575567699798999996867235222110
#=GC scorecons_70                     ____________****_***_____________*****_************_*___________***__*____*__**__*__**_**************_________
#=GC scorecons_80                     _____________***_***_______________**__****_***_*_*_*___________***__*____*__________*_**********_*_*_________
#=GC scorecons_90                     _____________***___________________*___****_***___*_______________*__*____*____________**_*******_*___________
//