# STOCKHOLM 1.0
#=GF ID 3.30.1490.180/FF/000006
#=GF DE DNA-directed RNA polymerase subunit
#=GF AC 3.30.1490.180/FF/000006
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 92.291
#=GS P17545/383-440      AC P17545
#=GS P17545/383-440      OS Trypanosoma brucei brucei
#=GS P17545/383-440      DE DNA-directed RNA polymerase II subunit RPB1-B
#=GS P17545/383-440      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanozoon; Trypanosoma brucei; Trypanosoma brucei brucei; 
#=GS P17545/383-440      DR EC; 2.7.7.6; 
#=GS Q584K3/382-439      AC Q584K3
#=GS Q584K3/382-439      OS Trypanosoma brucei brucei TREU927
#=GS Q584K3/382-439      DE DNA-directed RNA polymerase subunit
#=GS Q584K3/382-439      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanozoon; Trypanosoma brucei; Trypanosoma brucei brucei; 
#=GS Q584K3/382-439      DR GO; GO:0005654; GO:0045291; 
#=GS Q57YU2/382-439      AC Q57YU2
#=GS Q57YU2/382-439      OS Trypanosoma brucei brucei TREU927
#=GS Q57YU2/382-439      DE DNA-directed RNA polymerase subunit
#=GS Q57YU2/382-439      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanozoon; Trypanosoma brucei; Trypanosoma brucei brucei; 
#=GS Q57YU2/382-439      DR GO; GO:0005634; 
#=GS Q4Q600/359-416      AC Q4Q600
#=GS Q4Q600/359-416      OS Leishmania major
#=GS Q4Q600/359-416      DE DNA-directed RNA polymerase subunit
#=GS Q4Q600/359-416      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Leishmania; Leishmania major species complex; Leishmania major; 
#=GS Q4Q600/359-416      DR GO; GO:0005654; 
#=GS A0A0C4K465/521-582  AC A0A0C4K465
#=GS A0A0C4K465/521-582  OS Physcomitrella patens
#=GS A0A0C4K465/521-582  DE DNA-directed RNA polymerase subunit
#=GS A0A0C4K465/521-582  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella; Physcomitrella patens; 
#=GS A9SIR4/593-654      AC A9SIR4
#=GS A9SIR4/593-654      OS Physcomitrella patens
#=GS A9SIR4/593-654      DE DNA-directed RNA polymerase subunit
#=GS A9SIR4/593-654      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella; Physcomitrella patens; 
#=GS A0A2K1JBT9/541-602  AC A0A2K1JBT9
#=GS A0A2K1JBT9/541-602  OS Physcomitrella patens
#=GS A0A2K1JBT9/541-602  DE DNA-directed RNA polymerase subunit
#=GS A0A2K1JBT9/541-602  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella; Physcomitrella patens; 
#=GS A9SIX8/745-805      AC A9SIX8
#=GS A9SIX8/745-805      OS Physcomitrella patens
#=GS A9SIX8/745-805      DE DNA-directed RNA polymerase subunit
#=GS A9SIX8/745-805      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella; Physcomitrella patens; 
#=GS A0A0C4K0P8/524-584  AC A0A0C4K0P8
#=GS A0A0C4K0P8/524-584  OS Physcomitrella patens
#=GS A0A0C4K0P8/524-584  DE DNA-directed RNA polymerase subunit
#=GS A0A0C4K0P8/524-584  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella; Physcomitrella patens; 
#=GS A2DKT1/388-447      AC A2DKT1
#=GS A2DKT1/388-447      OS Trichomonas vaginalis
#=GS A2DKT1/388-447      DE DNA-directed RNA polymerase subunit
#=GS A2DKT1/388-447      DR ORG; Eukaryota; Trichomonadida; Trichomonadidae; Trichomonas; Trichomonas vaginalis; 
#=GS N9UZ70/372-427      AC N9UZ70
#=GS N9UZ70/372-427      OS Entamoeba histolytica HM-1:IMSS-A
#=GS N9UZ70/372-427      DE DNA-directed RNA polymerase subunit
#=GS N9UZ70/372-427      DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba histolytica; 
#=GS B0E6R8/371-426      AC B0E6R8
#=GS B0E6R8/371-426      OS Entamoeba dispar SAW760
#=GS B0E6R8/371-426      DE DNA-directed RNA polymerase subunit
#=GS B0E6R8/371-426      DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba dispar; 
#=GS K2HUI7/371-426      AC K2HUI7
#=GS K2HUI7/371-426      OS Entamoeba nuttalli P19
#=GS K2HUI7/371-426      DE DNA-directed RNA polymerase subunit
#=GS K2HUI7/371-426      DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba nuttalli; 
#=GS V9ZAN4/297-356      AC V9ZAN4
#=GS V9ZAN4/297-356      OS Trichomonas stableri
#=GS V9ZAN4/297-356      DE DNA-directed RNA polymerase subunit
#=GS V9ZAN4/297-356      DR ORG; Eukaryota; Trichomonadida; Trichomonadidae; Trichomonas; Trichomonas stableri; 
#=GS K2NKG9/366-423      AC K2NKG9
#=GS K2NKG9/366-423      OS Trypanosoma cruzi marinkellei
#=GS K2NKG9/366-423      DE DNA-directed RNA polymerase subunit
#=GS K2NKG9/366-423      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Schizotrypanum; Trypanosoma cruzi; Trypanosoma cruzi marinkellei; 
#=GS G0ULQ7/383-440      AC G0ULQ7
#=GS G0ULQ7/383-440      OS Trypanosoma congolense IL3000
#=GS G0ULQ7/383-440      DE DNA-directed RNA polymerase subunit
#=GS G0ULQ7/383-440      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Nannomonas; Trypanosoma congolense; 
#=GS A0A1X0NJ78/373-430  AC A0A1X0NJ78
#=GS A0A1X0NJ78/373-430  OS Trypanosoma theileri
#=GS A0A1X0NJ78/373-430  DE DNA-directed RNA polymerase subunit
#=GS A0A1X0NJ78/373-430  DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanosoma theileri; 
#=GS A0A061J0Q4/366-423  AC A0A061J0Q4
#=GS A0A061J0Q4/366-423  OS Trypanosoma rangeli SC58
#=GS A0A061J0Q4/366-423  DE DNA-directed RNA polymerase subunit
#=GS A0A061J0Q4/366-423  DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Herpetosoma; Trypanosoma rangeli; 
#=GS A0A0N0P4K4/359-416  AC A0A0N0P4K4
#=GS A0A0N0P4K4/359-416  OS Leptomonas seymouri
#=GS A0A0N0P4K4/359-416  DE DNA-directed RNA polymerase subunit
#=GS A0A0N0P4K4/359-416  DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leptomonas; Leptomonas seymouri; 
#=GS A0A1G4I4P8/382-439  AC A0A1G4I4P8
#=GS A0A1G4I4P8/382-439  OS Trypanosoma equiperdum
#=GS A0A1G4I4P8/382-439  DE DNA-directed RNA polymerase subunit
#=GS A0A1G4I4P8/382-439  DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanozoon; Trypanosoma equiperdum; 
#=GS A4HJP9/359-416      AC A4HJP9
#=GS A4HJP9/359-416      OS Leishmania braziliensis
#=GS A4HJP9/359-416      DE DNA-directed RNA polymerase subunit
#=GS A4HJP9/359-416      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Viannia; Leishmania braziliensis species complex; Leishmania braziliensis; 
#=GS Q26791/382-439      AC Q26791
#=GS Q26791/382-439      OS Trypanosoma brucei
#=GS Q26791/382-439      DE DNA-directed RNA polymerase subunit
#=GS Q26791/382-439      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanozoon; Trypanosoma brucei; 
#=GS Q26791/382-439      DR GO; GO:0005654; GO:0045291; 
#=GS C9ZMF2/382-439      AC C9ZMF2
#=GS C9ZMF2/382-439      OS Trypanosoma brucei gambiense DAL972
#=GS C9ZMF2/382-439      DE DNA-directed RNA polymerase subunit
#=GS C9ZMF2/382-439      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanozoon; Trypanosoma brucei; Trypanosoma brucei gambiense; 
#=GS A0A3L6L8J1/382-439  AC A0A3L6L8J1
#=GS A0A3L6L8J1/382-439  OS Trypanosoma brucei equiperdum
#=GS A0A3L6L8J1/382-439  DE DNA-directed RNA polymerase subunit
#=GS A0A3L6L8J1/382-439  DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanozoon; Trypanosoma brucei; Trypanosoma brucei equiperdum; 
#=GS A4I766/359-416      AC A4I766
#=GS A4I766/359-416      OS Leishmania infantum
#=GS A4I766/359-416      DE DNA-directed RNA polymerase subunit
#=GS A4I766/359-416      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Leishmania; Leishmania donovani species complex; Leishmania infantum; 
#=GS A0A088SG91/359-416  AC A0A088SG91
#=GS A0A088SG91/359-416  OS Leishmania panamensis
#=GS A0A088SG91/359-416  DE DNA-directed RNA polymerase subunit
#=GS A0A088SG91/359-416  DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Viannia; Leishmania guyanensis species complex; Leishmania panamensis; 
#=GS E9BN38/359-416      AC E9BN38
#=GS E9BN38/359-416      OS Leishmania donovani BPK282A1
#=GS E9BN38/359-416      DE DNA-directed RNA polymerase subunit
#=GS E9BN38/359-416      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Leishmania; Leishmania donovani species complex; Leishmania donovani; 
#=GS P17546/383-440      AC P17546
#=GS P17546/383-440      OS Trypanosoma brucei brucei
#=GS P17546/383-440      DE DNA-directed RNA polymerase II subunit RPB1-A
#=GS P17546/383-440      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanozoon; Trypanosoma brucei; Trypanosoma brucei brucei; 
#=GS P17546/383-440      DR EC; 2.7.7.6; 
#=GS F8QSY3/308-367      AC F8QSY3
#=GS F8QSY3/308-367      OS Trichomonas vaginalis
#=GS F8QSY3/308-367      DE DNA-directed RNA polymerase subunit
#=GS F8QSY3/308-367      DR ORG; Eukaryota; Trichomonadida; Trichomonadidae; Trichomonas; Trichomonas vaginalis; 
#=GS Q6IUR3/372-427      AC Q6IUR3
#=GS Q6IUR3/372-427      OS Entamoeba histolytica
#=GS Q6IUR3/372-427      DE DNA-directed RNA polymerase subunit
#=GS Q6IUR3/372-427      DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba histolytica; 
#=GS M3TVT3/372-427      AC M3TVT3
#=GS M3TVT3/372-427      OS Entamoeba histolytica HM-1:IMSS-B
#=GS M3TVT3/372-427      DE DNA-directed RNA polymerase subunit
#=GS M3TVT3/372-427      DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba histolytica; 
#=GS M7W3X7/372-427      AC M7W3X7
#=GS M7W3X7/372-427      OS Entamoeba histolytica HM-3:IMSS
#=GS M7W3X7/372-427      DE DNA-directed RNA polymerase subunit
#=GS M7W3X7/372-427      DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba histolytica; 
#=GS M2SAN1/372-427      AC M2SAN1
#=GS M2SAN1/372-427      OS Entamoeba histolytica KU27
#=GS M2SAN1/372-427      DE DNA-directed RNA polymerase subunit
#=GS M2SAN1/372-427      DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba histolytica; 
#=GF SQ 33
P17545/383-440              TFPERVNTINKKRLTEFARRTV-------YPS-ANYIHHPNGTITKLALLRDRSKVTLNIGDVVER
Q584K3/382-439              TFPERVNTVNKKRLTEFARRTV-------YPS-ANYIHHPNGTITKLALLRDRSKVTLNIGDVVER
Q57YU2/382-439              TFPERVNTVNKKRLTEFARRTV-------YPS-ANYIHHPNGTITKLALLRDRSKVTLNIGDVVER
Q4Q600/359-416              TFPERVNVINKKRLTEFVQRTT-------YPS-ANYIIRPNGNVTKLALVKDRSAVHLDVGDVVER
A0A0C4K465/521-582          TLPERASQWNHTKLQEYVNVSQKLQQESENTAHATRVERNEVVYQVLS----KTSLKVQIGDIVHR
A9SIR4/593-654              TLPERASQWNHTKLQEYVNVSQKLQQESENTAHATRVERNEVVYQVLS----KTSLKVQIGDIVHR
A0A2K1JBT9/541-602          TLPERASQWNHTKLQEYVNVSQKLQQESENTAHATRVERNEVVYQVLS----KTSLKVQIGDIVHR
A9SIX8/745-805              TVPERATKWNRSKLQEYVDRTQMLQQGSGKPG-ATRIVRNEEAFQVWA----NSTHTVQIGDVIHR
A0A0C4K0P8/524-584          TVPERATKWNRSKLQEYVDRTQMLQQGSGKPG-ATRIVRNEEAFQVWA----NSTHTVQIGDVIHR
A2DKT1/388-447              TFPEVVTPTNQKWLESIVMKGH-----DDLGG-ANFVINDHGTRTDLSCCTDLSTITLSPGYIVER
N9UZ70/372-427              TFPEVVTQHNKEKLQKLVSAGM-----NDYPG-AFMLERKNGQTYRLN----GSEKIIDIGDTVHR
B0E6R8/371-426              TFPEVVTQHNKEKLQKLVNAGM-----NDYPG-AFMLERKNGQTYRLN----GSEKIIDIGDTVHR
K2HUI7/371-426              TFPEVVTQHNKEKLQKLVNAGM-----NDYPG-AFMLERKNGQTYRLN----GSEKIIDIGDTVHR
V9ZAN4/297-356              TFPEVVTPTNQKWLESIVMKGH-----DDIGG-ANFVINDHGTRTDLSCCTDLSTITLSPGYIVER
K2NKG9/366-423              TFPERVNAINKKRLTEFVRRPV-------YPS-ANYIHHPNGTTTKLALRRDRSKVTLNIGDVVER
G0ULQ7/383-440              TFPERVNTVNKKRLTEFVRREV-------YPS-ANYIHHPNGTITKLALLRDRSKVTLNIGDIVER
A0A1X0NJ78/373-430          TFPERVNAINKKRLTEFARRPV-------YPS-ANYIHHPNGTTTKLALVRDRSKVTLNIGDVVER
A0A061J0Q4/366-423          TFPERVNAINKKRLTEFVRRPV-------YPS-ANYIHHPNGTTTKLALRRDRSKVTLNIGDVVER
A0A0N0P4K4/359-416          TFPERVNVINKKRLTEFVQRST-------YPS-ANYIMRPNGNVTKLALVKDRSAVHLDVGDVVER
A0A1G4I4P8/382-439          TFPERVNTVNKKRLTEFARRTV-------YPS-ANYIHHPNGTITKLALLRDRSKVTLNIGDVVER
A4HJP9/359-416              TFPERVNVINKKRLTDFVQRVT-------YPS-ANYVIRPNGNVTKLALVKDRSAVNLDVGDVVER
Q26791/382-439              TFPERVNTVNKKRLTEFARRTV-------YPS-ANYIHHPNGTITKLALLRDRSKVTLNIGDVVER
C9ZMF2/382-439              TFPERVNTVNKKRLTEFARRTV-------YPS-ANYIHHPNGTITKLALLRDRSKVTLNIGDVVER
A0A3L6L8J1/382-439          TFPERVNTVNKKRLTEFARRTV-------YPS-ANYIHHPNGTITKLALLRDRSKVTLNIGDVVER
A4I766/359-416              TFPERVNVINKKRLTEFVQRTT-------YPS-ANYIIRPNGNVTKLALVKDRNAVHLDVGDVVER
A0A088SG91/359-416          TFPERVNVINKKRLTDFVQRVT-------YPS-ANYVIRPNGNVTKLALVKDRSAVNLDVGDVVER
E9BN38/359-416              TFPERVNVINKKRLTEFVQRTT-------YPS-ANYIIRPNGNVTKLALVKDRNAVHLDVGDVVER
P17546/383-440              TFPERVNTVNKKRLTEFARRTV-------YPS-ANYIHHPNGTITKLALLRDRSKVTLNIGDVVER
F8QSY3/308-367              TFPEVVTPTNQKWLESIVMKGH-----DDLGG-ANFVINDHGTRTDLSCCTDLSTITLSPGYIVER
Q6IUR3/372-427              TFPEVVTQHNKEKLQKLVSAGM-----NDYPG-AFMLERKNGQTYRLN----GSEKIIDIGDTVHR
M3TVT3/372-427              TFPEVVTQHNKEKLQKLVSAGM-----NDYPG-AFMLERKNGQTYRLN----GSEKIIDIGDTVHR
M7W3X7/372-427              TFPEVVTQHNKEKLQKLVSAGM-----NDYPG-AFMLERKNGQTYRLN----GSEKIIDIGDTVHR
M2SAN1/372-427              TFPEVVTQHNKEKLQKLVSAGM-----NDYPG-AFMLERKNGQTYRLN----GSEKIIDIGDTVHR
#=GC scorecons              979957533965695557344300000115650944636466434475111247444646975859
#=GC scorecons_70           ****_*___**__*___*____________*__*_______*____*______*_____***_*_*
#=GC scorecons_80           *_**_____*___*___________________*____________*______*______**_*_*
#=GC scorecons_90           *_**_____*___*___________________*__________________________*__*_*
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