# STOCKHOLM 1.0
#=GF ID 3.30.1370.120/FF/000004
#=GF DE DNA transporter HofQ
#=GF AC 3.30.1370.120/FF/000004
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 11.505
#=GS P34749/87-183      AC P34749
#=GS P34749/87-183      OS Escherichia coli K-12
#=GS P34749/87-183      DE DNA utilization protein HofQ
#=GS P34749/87-183      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS P34749/87-183      DR GO; GO:0003677; GO:0006308; GO:0015976; 
#=GS A0A1X9WPE0/87-183  AC A0A1X9WPE0
#=GS A0A1X9WPE0/87-183  OS Shigella sonnei
#=GS A0A1X9WPE0/87-183  DE DNA transporter HofQ
#=GS A0A1X9WPE0/87-183  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella sonnei; 
#=GS I6D0W8/87-183      AC I6D0W8
#=GS I6D0W8/87-183      OS Shigella boydii 965-58
#=GS I6D0W8/87-183      DE Type IV pilus secretin PilQ family protein
#=GS I6D0W8/87-183      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella boydii; 
#=GS A0A358UT30/87-183  AC A0A358UT30
#=GS A0A358UT30/87-183  OS Shigella sp.
#=GS A0A358UT30/87-183  DE DNA transporter HofQ
#=GS A0A358UT30/87-183  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella sp.; 
#=GS A0A0H2V281/87-183  AC A0A0H2V281
#=GS A0A0H2V281/87-183  OS Shigella flexneri
#=GS A0A0H2V281/87-183  DE Putative transport protein
#=GS A0A0H2V281/87-183  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella flexneri; 
#=GS A0A2S6P563/87-183  AC A0A2S6P563
#=GS A0A2S6P563/87-183  OS Escherichia albertii
#=GS A0A2S6P563/87-183  DE DNA transporter HofQ
#=GS A0A2S6P563/87-183  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia albertii; 
#=GS A0A1X3JC78/87-183  AC A0A1X3JC78
#=GS A0A1X3JC78/87-183  OS Escherichia coli H386
#=GS A0A1X3JC78/87-183  DE Protein transport protein HofQ
#=GS A0A1X3JC78/87-183  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS Q3YWN2/87-183      AC Q3YWN2
#=GS Q3YWN2/87-183      OS Shigella sonnei Ss046
#=GS Q3YWN2/87-183      DE Putative transport portein
#=GS Q3YWN2/87-183      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella sonnei; 
#=GS F4SQC1/87-183      AC F4SQC1
#=GS F4SQC1/87-183      OS Escherichia coli H736
#=GS F4SQC1/87-183      DE Protein transport protein HofQ
#=GS F4SQC1/87-183      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS A7ZSR6/87-183      AC A7ZSR6
#=GS A7ZSR6/87-183      OS Escherichia coli O139:H28 str. E24377A
#=GS A7ZSR6/87-183      DE Protein transporter HofQ
#=GS A7ZSR6/87-183      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS A0A090HTB2/87-183  AC A0A090HTB2
#=GS A0A090HTB2/87-183  OS Escherichia coli
#=GS A0A090HTB2/87-183  DE DNA transporter HofQ
#=GS A0A090HTB2/87-183  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS D6I269/87-183      AC D6I269
#=GS D6I269/87-183      OS Escherichia coli B088
#=GS D6I269/87-183      DE HofQ
#=GS D6I269/87-183      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS A0A1X3KXK6/87-183  AC A0A1X3KXK6
#=GS A0A1X3KXK6/87-183  OS Escherichia coli H420
#=GS A0A1X3KXK6/87-183  DE Protein transport protein HofQ
#=GS A0A1X3KXK6/87-183  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS A0A236RAU9/87-183  AC A0A236RAU9
#=GS A0A236RAU9/87-183  OS Shigella boydii
#=GS A0A236RAU9/87-183  DE DNA transporter HofQ
#=GS A0A236RAU9/87-183  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella boydii; 
#=GS A0A0A0FFL0/87-183  AC A0A0A0FFL0
#=GS A0A0A0FFL0/87-183  OS Escherichia coli G3/10
#=GS A0A0A0FFL0/87-183  DE Protein transport protein HofQ
#=GS A0A0A0FFL0/87-183  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS L4V2Y4/77-173      AC L4V2Y4
#=GS L4V2Y4/77-173      OS Escherichia coli KTE112
#=GS L4V2Y4/77-173      DE Type IV pilus secretin PilQ
#=GS L4V2Y4/77-173      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS A0A0K3YXM8/77-173  AC A0A0K3YXM8
#=GS A0A0K3YXM8/77-173  OS Escherichia coli
#=GS A0A0K3YXM8/77-173  DE Outer membrane porin HofQ
#=GS A0A0K3YXM8/77-173  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS L3C1F8/77-173      AC L3C1F8
#=GS L3C1F8/77-173      OS Escherichia coli KTE193
#=GS L3C1F8/77-173      DE Type IV pilus secretin PilQ
#=GS L3C1F8/77-173      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS Q8X818/77-173      AC Q8X818
#=GS Q8X818/77-173      OS Escherichia coli O157:H7
#=GS Q8X818/77-173      DE DNA catabolic fimbrial transporter
#=GS Q8X818/77-173      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS A0A1U9TVB3/87-183  AC A0A1U9TVB3
#=GS A0A1U9TVB3/87-183  OS Escherichia coli
#=GS A0A1U9TVB3/87-183  DE DNA transporter HofQ
#=GS A0A1U9TVB3/87-183  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS F4T4S5/87-183      AC F4T4S5
#=GS F4T4S5/87-183      OS Escherichia coli M605
#=GS F4T4S5/87-183      DE Protein transport protein HofQ
#=GS F4T4S5/87-183      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS B7UK96/87-183      AC B7UK96
#=GS B7UK96/87-183      OS Escherichia coli O127:H6 str. E2348/69
#=GS B7UK96/87-183      DE Predicted fimbrial transporter
#=GS B7UK96/87-183      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS A0A192CD91/87-183  AC A0A192CD91
#=GS A0A192CD91/87-183  OS Escherichia coli O25b:H4
#=GS A0A192CD91/87-183  DE HofQ
#=GS A0A192CD91/87-183  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS H4JDZ0/87-183      AC H4JDZ0
#=GS H4JDZ0/87-183      OS Escherichia coli DEC1D
#=GS H4JDZ0/87-183      DE Type IV pilus secretin PilQ family protein
#=GS H4JDZ0/87-183      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS A0A2D0P2F4/87-183  AC A0A2D0P2F4
#=GS A0A2D0P2F4/87-183  OS Escherichia coli O127:H6
#=GS A0A2D0P2F4/87-183  DE Outer membrane porin HofQ
#=GS A0A2D0P2F4/87-183  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS A0A454A8R1/87-183  AC A0A454A8R1
#=GS A0A454A8R1/87-183  OS Escherichia coli 536
#=GS A0A454A8R1/87-183  DE Protein transport protein HofQ
#=GS A0A454A8R1/87-183  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS A0A2Y2T196/87-183  AC A0A2Y2T196
#=GS A0A2Y2T196/87-183  OS Shigella flexneri 2a
#=GS A0A2Y2T196/87-183  DE Outer membrane porin HofQ
#=GS A0A2Y2T196/87-183  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella flexneri; 
#=GS A0A200LLE4/87-183  AC A0A200LLE4
#=GS A0A200LLE4/87-183  OS Shigella sonnei
#=GS A0A200LLE4/87-183  DE Porin
#=GS A0A200LLE4/87-183  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella sonnei; 
#=GS A0A384KN52/87-183  AC A0A384KN52
#=GS A0A384KN52/87-183  OS Shigella flexneri
#=GS A0A384KN52/87-183  DE DNA transporter HofQ
#=GS A0A384KN52/87-183  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella flexneri; 
#=GS D2A9I8/87-183      AC D2A9I8
#=GS D2A9I8/87-183      OS Shigella flexneri 2002017
#=GS D2A9I8/87-183      DE Putative transport protein
#=GS D2A9I8/87-183      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella flexneri; 
#=GS I6FCF1/61-157      AC I6FCF1
#=GS I6FCF1/61-157      OS Shigella flexneri 1235-66
#=GS I6FCF1/61-157      DE Bacterial type II/III secretion system short domain protein
#=GS I6FCF1/61-157      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella flexneri; 
#=GF SQ 31
P34749/87-183              NILSVHSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVEL
A0A1X9WPE0/87-183          NILSVHSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVEL
I6D0W8/87-183              NILSVHSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVEL
A0A358UT30/87-183          NILSVHSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVEL
A0A0H2V281/87-183          NILSVHSIAWQNDNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVEL
A0A2S6P563/87-183          NILSVHSIAWQNDNIARQEAERARAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKAALTALEQWAAQMDLPVGQVEL
A0A1X3JC78/87-183          NILSVHSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVEL
Q3YWN2/87-183              NILSVHSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVEL
F4SQC1/87-183              NILSVHSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVEL
A7ZSR6/87-183              NILSVHSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVEL
A0A090HTB2/87-183          NILSVHSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVEL
D6I269/87-183              NILSVHSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVEL
A0A1X3KXK6/87-183          NILSVHSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVEL
A0A236RAU9/87-183          NILSVHSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVEL
A0A0A0FFL0/87-183          NILSVHSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVEL
L4V2Y4/77-173              NILSVHSIAWQNDNIARQEAEQARAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVEL
A0A0K3YXM8/77-173          NILSVHSIAWQNDNIARQEAEQARAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVEL
L3C1F8/77-173              NILSVHSIAWQNDNIARQEAEQARAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVEL
Q8X818/77-173              NILSVHSIAWQNDNIARQEAEQARAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVEL
A0A1U9TVB3/87-183          NILSVHSVAWQNDNIARQEAEQTRAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSTLEQWVSQMDLPVGQVEL
F4T4S5/87-183              NILSVHSVAWQNDNIARQEAEQTRAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSTLEQWVSQMDLPVGQVEL
B7UK96/87-183              NILSVHSVAWQNDNIARQEAEQTRAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSTLEQWVSQMDLPVGQVEL
A0A192CD91/87-183          NILSVHSVAWQNDNIARQEAEQTRAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSTLEQWVSQMDLPVGQVEL
H4JDZ0/87-183              NILSVHSVAWQNDNIARQEAEQTRAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSTLEQWVSQMDLPVGQVEL
A0A2D0P2F4/87-183          NILSVHSVAWQNDNIARQEAEQTRAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSTLEQWVSQMDLPVGQVEL
A0A454A8R1/87-183          NILSVHSVAWQNDNIARQEAEQTRAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSTLEQWVSQMDLPVGQVEL
A0A2Y2T196/87-183          NILSVHSIAWQNDNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVEL
A0A200LLE4/87-183          NILSVHSIAWQNDNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVEL
A0A384KN52/87-183          NILSVHSIAWQNDNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVEL
D2A9I8/87-183              NILSVHSIAWQNDNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVEL
I6FCF1/61-157              NILSVHSIAWQNDNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVEL
#=GC scorecons             9999999799996999999998699999999999699999999999999999999999999999999999999998998699998699999999999
#=GC scorecons_70          **********************************_**************************************************************
#=GC scorecons_80          ************_*********_***********_********************************************_*****_***********
#=GC scorecons_90          *******_****_*********_***********_********************************************_*****_***********
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