# STOCKHOLM 1.0
#=GF ID 3.30.1370.10/FF/000119
#=GF DE KH type 1 domain protein
#=GF AC 3.30.1370.10/FF/000119
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 82.774
#=GS 3aevB01/26-115     AC O59282
#=GS 3aevB01/26-115     OS Pyrococcus horikoshii OT3
#=GS 3aevB01/26-115     DE Uncharacterized protein
#=GS 3aevB01/26-115     DR CATH; 3aev; B:26-115; 
#=GS 3aevB01/26-115     DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus; Pyrococcus horikoshii; 
#=GS 2e3uA01/33-114     AC O59282
#=GS 2e3uA01/33-114     OS Pyrococcus horikoshii OT3
#=GS 2e3uA01/33-114     DE Uncharacterized protein
#=GS 2e3uA01/33-114     DR CATH; 2e3u; A:33-114; 
#=GS 2e3uA01/33-114     DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus; Pyrococcus horikoshii; 
#=GS B0R7D3/1-77        AC B0R7D3
#=GS B0R7D3/1-77        OS Halobacterium salinarum R1
#=GS B0R7D3/1-77        DE Probable ribosome biogenesis protein Dim2
#=GS B0R7D3/1-77        DR ORG; Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium; Halobacterium salinarum; 
#=GS Q8TSA5/1-78        AC Q8TSA5
#=GS Q8TSA5/1-78        OS Methanosarcina acetivorans C2A
#=GS Q8TSA5/1-78        DE Uncharacterized protein
#=GS Q8TSA5/1-78        DR ORG; Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina; Methanosarcina acetivorans; 
#=GS A9A3P3/1-82        AC A9A3P3
#=GS A9A3P3/1-82        OS Nitrosopumilus maritimus SCM1
#=GS A9A3P3/1-82        DE KH type 1 domain protein
#=GS A9A3P3/1-82        DR ORG; Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus; Nitrosopumilus maritimus; 
#=GS Q5JH80/36-117      AC Q5JH80
#=GS Q5JH80/36-117      OS Thermococcus kodakarensis KOD1
#=GS Q5JH80/36-117      DE RNA-binding protein, containing KH domain
#=GS Q5JH80/36-117      DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus; Thermococcus kodakarensis; 
#=GS Q57885/14-94       AC Q57885
#=GS Q57885/14-94       OS Methanocaldococcus jannaschii DSM 2661
#=GS Q57885/14-94       DE KH domain-containing protein MJ0443
#=GS Q57885/14-94       DR ORG; Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus; Methanocaldococcus jannaschii; 
#=GS A0A087S1N6/1-82    AC A0A087S1N6
#=GS A0A087S1N6/1-82    OS Marine Group I thaumarchaeote SCGC AAA799-P11
#=GS A0A087S1N6/1-82    DE RNA-processing protein
#=GS A0A087S1N6/1-82    DR ORG; Archaea; Thaumarchaeota; Marine Group I thaumarchaeote SCGC AAA799-P11; 
#=GS A0A1I0PWF2/1-77    AC A0A1I0PWF2
#=GS A0A1I0PWF2/1-77    OS Halobacterium jilantaiense
#=GS A0A1I0PWF2/1-77    DE Ribosomal RNA assembly protein
#=GS A0A1I0PWF2/1-77    DR ORG; Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium; Halobacterium jilantaiense; 
#=GS A0A0E3SCV6/1-78    AC A0A0E3SCV6
#=GS A0A0E3SCV6/1-78    OS Methanosarcina horonobensis HB-1 = JCM 15518
#=GS A0A0E3SCV6/1-78    DE Uncharacterized protein
#=GS A0A0E3SCV6/1-78    DR ORG; Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina; Methanosarcina horonobensis; 
#=GS A0A2Z2M8K3/36-117  AC A0A2Z2M8K3
#=GS A0A2Z2M8K3/36-117  OS Thermococcus gorgonarius
#=GS A0A2Z2M8K3/36-117  DE RNA-processing protein
#=GS A0A2Z2M8K3/36-117  DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus; Thermococcus gorgonarius; 
#=GS Q9HN69/1-77        AC Q9HN69
#=GS Q9HN69/1-77        OS Halobacterium salinarum NRC-1
#=GS Q9HN69/1-77        DE Uncharacterized protein
#=GS Q9HN69/1-77        DR ORG; Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium; Halobacterium salinarum; 
#=GF SQ 12
3aevB01/26-115             DEWEEFFKQEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSETGEVWITSTKETEDPLAVWKARDIVLAIGRGFSPERAFRLLNE
2e3uA01/33-114             -------KQEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSETGEVWITSTKETEDPLAVWKARDIVLAIGRGFSPERAFRLLN-
B0R7D3/1-77                ---------MKHVKIPTDRIGVLIGDGGETLRRIEAAAEVDIDVDSQDGAVAI---ERTGDPVRGMQAPEIVQAIGRGFKPDEALTLLD-
Q8TSA5/1-78                --------MTQYVKIPKERIGVIIGPKGETKKFIEEKTTCQLEIESDSGKIDVTC---EDDPLKEFRILETLKAIGRGFSPEKALQILD-
A9A3P3/1-82                ------MSFEKLLRIPNDRIAVLIGKSGNIKSKIEKSCHVSLDIDGETGEVLIKS-DGDVEKIQPFKAMEIVTAIGRGFSPENAMTLLK-
Q5JH80/36-117              -------EQEEFVKIPKERIAVLIGKKGQTKKEIERKTKTKIEVDSETGEVFITATEETDDPLAVWKARDVVMAIGRGFSPERAFRLFN-
Q57885/14-94               -------KSIEILKIPKDRVGVLIGKKGNVKKTIEKELGVKLEIDAD-GTVTIYGTDKQKDPLAVWKARDIVRAIGRGFNPEIALKLVS-
A0A087S1N6/1-82            ------MSFEKLLRIPNDRIAVLIGKSGNVKSKIEKACHVSLNIDGETGEVVIKS-DGDVEKIQPFKAMEIVTAIGRGFSPENAMTLLK-
A0A1I0PWF2/1-77            ---------MKHVKIPNDRIGALIGDGGETLRRIEAAAEVDIDVDSQDGAVAI---ERTGDPVRGMKAPEIVQAIGRGFKPDEALTLLD-
A0A0E3SCV6/1-78            --------MTQYVKIPKERIGVIIGPKGETKKLIEDKTTCQLEIESDSGKIDVTC---EEDPLKEFRVLETLKAIGRGFSPEKALEILD-
A0A2Z2M8K3/36-117          -------EQEEFVKIPKERIAVLIGKKGQTKREIERRTKTKIDVDSETGEVFITATEKTDDPLAVWKARDVVLAIGRGFSPERAFRLFN-
Q9HN69/1-77                ---------MKHVKIPTDRIGVLIGDGGETLRRIEAAAEVDIDVDSQDGAVAI---ERTGDPVRGMQAPEIVQAIGRGFKPDEALTLLD-
#=GC scorecons             000000011354679957986879944956553994443446577654947272213243766434673767399999959749547640
#=GC scorecons_70          ____________****_***_****__*_*___**______*_***__*_*_*_______**____**_***_******_**_*__**__
#=GC scorecons_80          _____________***_***_****__*_____**_________*___*_*_*_______*__________*_******_**_*__*___
#=GC scorecons_90          ______________**__**_*_**__*_____**_____________*________________________******_*__*______
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