# STOCKHOLM 1.0
#=GF ID 3.30.1360.10/FF/000024
#=GF DE DNA-directed RNA polymerase II subunit RPB3
#=GF AC 3.30.1360.10/FF/000024
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 46.581
#=GS 5iydC01/1-43_175-275 AC P19387
#=GS 5iydC01/1-43_175-275 OS Homo sapiens
#=GS 5iydC01/1-43_175-275 DE DNA-directed RNA polymerase II subunit RPB3
#=GS 5iydC01/1-43_175-275 DR CATH; 5iyd; C:1-43; C:175-275; 
#=GS 5iydC01/1-43_175-275 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS 5iycC01/1-43_175-275 AC P19387
#=GS 5iycC01/1-43_175-275 OS Homo sapiens
#=GS 5iycC01/1-43_175-275 DE DNA-directed RNA polymerase II subunit RPB3
#=GS 5iycC01/1-43_175-275 DR CATH; 5iyc; C:1-43; C:175-275; 
#=GS 5iycC01/1-43_175-275 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS 5iybC01/1-43_175-275 AC P19387
#=GS 5iybC01/1-43_175-275 OS Homo sapiens
#=GS 5iybC01/1-43_175-275 DE DNA-directed RNA polymerase II subunit RPB3
#=GS 5iybC01/1-43_175-275 DR CATH; 5iyb; C:1-43; C:175-275; 
#=GS 5iybC01/1-43_175-275 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS W4YP91/116-202      AC W4YP91
#=GS W4YP91/116-202      OS Strongylocentrotus purpuratus
#=GS W4YP91/116-202      DE Uncharacterized protein
#=GS W4YP91/116-202      DR ORG; Eukaryota; Metazoa; Echinodermata; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus; Strongylocentrotus purpuratus; 
#=GS 6gmlC01/1-43_175-271 AC I3LCH3
#=GS 6gmlC01/1-43_175-271 OS Sus scrofa
#=GS 6gmlC01/1-43_175-271 DE DNA-directed RNA polymerase II subunit RPB3
#=GS 6gmlC01/1-43_175-271 DR CATH; 6gml; C:2-43; C:175-271; 
#=GS 6gmlC01/1-43_175-271 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Suina; Suidae; Sus; Sus scrofa; 
#=GS 6gmhC01/1-43_175-275 AC I3LCH3
#=GS 6gmhC01/1-43_175-275 OS Sus scrofa
#=GS 6gmhC01/1-43_175-275 DE DNA-directed RNA polymerase II subunit RPB3
#=GS 6gmhC01/1-43_175-275 DR CATH; 6gmh; C:2-43; C:175-271; 
#=GS 6gmhC01/1-43_175-275 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Suina; Suidae; Sus; Sus scrofa; 
#=GS 6exvC01/1-43_175-275 AC I3LCH3
#=GS 6exvC01/1-43_175-275 OS Sus scrofa
#=GS 6exvC01/1-43_175-275 DE DNA-directed RNA polymerase II subunit RPB3
#=GS 6exvC01/1-43_175-275 DR CATH; 6exv; C:2-43; C:175-271; 
#=GS 6exvC01/1-43_175-275 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Suina; Suidae; Sus; Sus scrofa; 
#=GS 5oikC01/1-43_175-275 AC Q3T0Q3
#=GS 5oikC01/1-43_175-275 OS Bos taurus
#=GS 5oikC01/1-43_175-275 DE DNA-directed RNA polymerase II subunit RPB3
#=GS 5oikC01/1-43_175-275 DR CATH; 5oik; C:2-43; C:175-271; 
#=GS 5oikC01/1-43_175-275 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Ruminantia; Pecora; Bovidae; Bovinae; Bos; Bos taurus; 
#=GS 5flmC01/1-43_175-275 AC Q3T0Q3
#=GS 5flmC01/1-43_175-275 OS Bos taurus
#=GS 5flmC01/1-43_175-275 DE DNA-directed RNA polymerase II subunit RPB3
#=GS 5flmC01/1-43_175-275 DR CATH; 5flm; C:2-43; C:175-271; 
#=GS 5flmC01/1-43_175-275 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Ruminantia; Pecora; Bovidae; Bovinae; Bos; Bos taurus; 
#=GS F6Y5Q3/49-137       AC F6Y5Q3
#=GS F6Y5Q3/49-137       OS Ciona intestinalis
#=GS F6Y5Q3/49-137       DE Uncharacterized protein
#=GS F6Y5Q3/49-137       DR ORG; Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona; Ciona intestinalis; 
#=GS A0A2G9S775/115-201  AC A0A2G9S775
#=GS A0A2G9S775/115-201  OS Rana catesbeiana
#=GS A0A2G9S775/115-201  DE Uncharacterized protein
#=GS A0A2G9S775/115-201  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Amphibia; Batrachia; Anura; Neobatrachia; Ranoidea; Ranidae; Rana; Aquarana; Rana catesbeiana; 
#=GS A0A226P9D9/320-406  AC A0A226P9D9
#=GS A0A226P9D9/320-406  OS Colinus virginianus
#=GS A0A226P9D9/320-406  DE Uncharacterized protein
#=GS A0A226P9D9/320-406  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Aves; Neognathae; Galloanserae; Galliformes; Odontophoridae; Colinus; Colinus virginianus; 
#=GS F7GBT0/130-216      AC F7GBT0
#=GS F7GBT0/130-216      OS Ornithorhynchus anatinus
#=GS F7GBT0/130-216      DE RNA polymerase II subunit C
#=GS F7GBT0/130-216      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Monotremata; Ornithorhynchidae; Ornithorhynchus; Ornithorhynchus anatinus; 
#=GS G1Q7F7/94-180       AC G1Q7F7
#=GS G1Q7F7/94-180       OS Myotis lucifugus
#=GS G1Q7F7/94-180       DE Uncharacterized protein
#=GS G1Q7F7/94-180       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Chiroptera; Microchiroptera; Vespertilionidae; Myotis; Myotis lucifugus; 
#=GS A0A3Q7SSF9/97-183   AC A0A3Q7SSF9
#=GS A0A3Q7SSF9/97-183   OS Vulpes vulpes
#=GS A0A3Q7SSF9/97-183   DE DNA-directed RNA polymerase II subunit RPB3-like
#=GS A0A3Q7SSF9/97-183   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Carnivora; Caniformia; Canidae; Vulpes; Vulpes vulpes; 
#=GS H2YEA8/16-104       AC H2YEA8
#=GS H2YEA8/16-104       OS Ciona savignyi
#=GS H2YEA8/16-104       DE Uncharacterized protein
#=GS H2YEA8/16-104       DR ORG; Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona; Ciona savignyi; 
#=GS A0A2U3Z209/89-172   AC A0A2U3Z209
#=GS A0A2U3Z209/89-172   OS Leptonychotes weddellii
#=GS A0A2U3Z209/89-172   DE DNA-directed RNA polymerase II subunit RPB3-like
#=GS A0A2U3Z209/89-172   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Carnivora; Caniformia; Phocidae; Leptonychotes; Leptonychotes weddellii; 
#=GF SQ 17
5iydC01/1-43_175-275        MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSEL--DEDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHEIQSDVLTIN
5iycC01/1-43_175-275        MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSEL--DEDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHEIQSDVLTIN
5iybC01/1-43_175-275        MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSEL--DEDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHEIQSDVLTIN
W4YP91/116-202              -------------------------------------------KWVPTAAIAFEYDPDNIMRHTVYPKPEEWPKSEFTEV--DEDTAQGKFDGDAVPNKFFFNVESIGALTPENIVFSGLSVLKKKLSDLQT--------------
6gmlC01/1-43_175-271        MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSEL--DEDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHEIQSDV----
6gmhC01/1-43_175-275        MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSEL--DEDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHEIQSDVLTIN
6exvC01/1-43_175-275        MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSEL--DEDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHEIQSDVLTIN
5oikC01/1-43_175-275        MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSEL--DEDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHEIQSDVLTIN
5flmC01/1-43_175-275        MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSEL--DEDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHEIQSDVLTIN
F6Y5Q3/49-137               -------------------------------------------KWQCVSAVAFEYDPDNALRHTTYPKPEEWPKSEYSELADDEDKYQADFDPHGKPNKFFFNVESTGALRPENIVLNGLAVLKKKLSDLQT--------------
A0A2G9S775/115-201          -------------------------------------------KWNPTAGVSFEYDPDNALRHTVYPKPEEWPKSEYSEI--DEEEAEAPYDPNGKPERFYYNVESCGSMRPENIVLSALSGLKRKLSDLQT--------------
A0A226P9D9/320-406          -------------------------------------------KWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSEI--DEEDAQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQT--------------
F7GBT0/130-216              -------------------------------------------KWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSEI--DEDEAQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQT--------------
G1Q7F7/94-180               -------------------------------------------KWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSEL--DEDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQT--------------
A0A3Q7SSF9/97-183           -------------------------------------------KWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSEL--DEDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQT--------------
H2YEA8/16-104               -------------------------------------------KWQSVSAVAFEYDPDNALRHTTFPKPEEWPKSEYTELADEEDKYQADFDPHGKPNKFYFNVETTGALRPENIILNGLAVLKKKLSDLQT--------------
A0A2U3Z209/89-172           -------------------------------------------KWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSEL--DEDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSD-----------------
#=GC scorecons              11111111111111111111111111111111111111111119967776889999999889997899999999998797008986588679768796798799986968799698876976998999977711111111111111
#=GC scorecons_70           ___________________________________________*************************************__****_**_******************************************______________
#=GC scorecons_80           ___________________________________________**_***_*****************************___***__**_***_***_********_*_****_****_**_**********______________
#=GC scorecons_90           ___________________________________________**_____*********_****_************_*___***__**__*__*_*__**_****_*_*_**_***__*__*******_________________
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