# STOCKHOLM 1.0
#=GF ID 3.30.1360.10/FF/000011
#=GF DE Related to DNA-directed RNA polymerase 13.3K chain
#=GF AC 3.30.1360.10/FF/000011
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 87.470
#=GS A8HRP7/1-114      AC A8HRP7
#=GS A8HRP7/1-114      OS Chlamydomonas reinhardtii
#=GS A8HRP7/1-114      DE DNA-directed RNA polymerase II, 13.6 kDa polypeptide
#=GS A8HRP7/1-114      DR ORG; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas; Chlamydomonas reinhardtii; 
#=GS A0A0D1E1J3/2-116  AC A0A0D1E1J3
#=GS A0A0D1E1J3/2-116  OS Ustilago maydis 521
#=GS A0A0D1E1J3/2-116  DE Uncharacterized protein
#=GS A0A0D1E1J3/2-116  DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Ustilago; Ustilago maydis; 
#=GS B8C993/1-123      AC B8C993
#=GS B8C993/1-123      OS Thalassiosira pseudonana
#=GS B8C993/1-123      DE Probable dna-directed RNA polymerase II 13.6 kDa polypeptide
#=GS B8C993/1-123      DR ORG; Eukaryota; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira; Thalassiosira pseudonana; 
#=GS A9V2R7/1-118      AC A9V2R7
#=GS A9V2R7/1-118      OS Monosiga brevicollis
#=GS A9V2R7/1-118      DE Predicted protein
#=GS A9V2R7/1-118      DR ORG; Eukaryota; Choanoflagellida; Salpingoecidae; Monosiga; Monosiga brevicollis; 
#=GS E6R0W5/1-117      AC E6R0W5
#=GS E6R0W5/1-117      OS Cryptococcus gattii WM276
#=GS E6R0W5/1-117      DE DNA-directed RNA polymerase ii 13.3 kDa polypeptide, putative
#=GS E6R0W5/1-117      DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus gattii species complex; Cryptococcus gattii VGI; 
#=GS A0A317XU23/2-119  AC A0A317XU23
#=GS A0A317XU23/2-119  OS Testicularia cyperi
#=GS A0A317XU23/2-119  DE RBP11-like subunits of RNA polymerase
#=GS A0A317XU23/2-119  DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Anthracoideaceae; Testicularia; Testicularia cyperi; 
#=GS R9PBD2/2-116      AC R9PBD2
#=GS R9PBD2/2-116      OS Pseudozyma hubeiensis SY62
#=GS R9PBD2/2-116      DE Uncharacterized protein
#=GS R9PBD2/2-116      DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Pseudozyma; Pseudozyma hubeiensis; 
#=GS A0A0F7S367/2-116  AC A0A0F7S367
#=GS A0A0F7S367/2-116  OS Sporisorium scitamineum
#=GS A0A0F7S367/2-116  DE Related to DNA-directed RNA polymerase 13.3K chain
#=GS A0A0F7S367/2-116  DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Sporisorium; Sporisorium scitamineum; 
#=GS M9LTZ5/2-116      AC M9LTZ5
#=GS M9LTZ5/2-116      OS Moesziomyces antarcticus T-34
#=GS M9LTZ5/2-116      DE RNA polymerase, subunit L
#=GS M9LTZ5/2-116      DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Moesziomyces; Moesziomyces antarcticus; 
#=GS A0A077R1R6/2-116  AC A0A077R1R6
#=GS A0A077R1R6/2-116  OS Melanopsichium pennsylvanicum 4
#=GS A0A077R1R6/2-116  DE Related to DNA-directed RNA polymerase 13.3K chain
#=GS A0A077R1R6/2-116  DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Melanopsichium; Melanopsichium pennsylvanicum; 
#=GS Q5KMB4/1-117      AC Q5KMB4
#=GS Q5KMB4/1-117      OS Cryptococcus neoformans var. neoformans JEC21
#=GS Q5KMB4/1-117      DE DNA-directed RNA polymerase ii 13.3 kDa polypeptide, putative
#=GS Q5KMB4/1-117      DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex; Cryptococcus neoformans; Cryptococcus neoformans var. neoformans; 
#=GS E6ZUZ5/2-116      AC E6ZUZ5
#=GS E6ZUZ5/2-116      OS Sporisorium reilianum SRZ2
#=GS E6ZUZ5/2-116      DE Related to DNA-directed RNA polymerase 13.3K chain
#=GS E6ZUZ5/2-116      DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Sporisorium; Sporisorium reilianum; 
#=GS I2FXZ1/2-116      AC I2FXZ1
#=GS I2FXZ1/2-116      OS Ustilago hordei Uh4857-4
#=GS I2FXZ1/2-116      DE Related to DNA-directed RNA polymerase 13.3K chain
#=GS I2FXZ1/2-116      DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Ustilago; Ustilago hordei; 
#=GS W3VGQ9/2-116      AC W3VGQ9
#=GS W3VGQ9/2-116      OS Moesziomyces aphidis DSM 70725
#=GS W3VGQ9/2-116      DE Uncharacterized protein
#=GS W3VGQ9/2-116      DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Moesziomyces; Moesziomyces aphidis; 
#=GS A0A1K0H4Z9/2-116  AC A0A1K0H4Z9
#=GS A0A1K0H4Z9/2-116  OS Ustilago bromivora
#=GS A0A1K0H4Z9/2-116  DE Related to DNA-directed RNA polymerase 13.3K chain
#=GS A0A1K0H4Z9/2-116  DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Ustilago; Ustilago bromivora; 
#=GS A0A095BZT5/1-117  AC A0A095BZT5
#=GS A0A095BZT5/1-117  OS Cryptococcus gattii VGII R265
#=GS A0A095BZT5/1-117  DE DNA-directed RNA polymerase II subunit RPB11
#=GS A0A095BZT5/1-117  DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus gattii species complex; Cryptococcus gattii VGII; 
#=GS A0A0D0VU65/1-117  AC A0A0D0VU65
#=GS A0A0D0VU65/1-117  OS Cryptococcus gattii CA1280
#=GS A0A0D0VU65/1-117  DE Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence
#=GS A0A0D0VU65/1-117  DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus gattii species complex; Cryptococcus gattii VGIII; 
#=GS A0A0D0WNC0/1-117  AC A0A0D0WNC0
#=GS A0A0D0WNC0/1-117  OS Cryptococcus gattii VGIV IND107
#=GS A0A0D0WNC0/1-117  DE Unplaced genomic scaffold supercont2.15, whole genome shotgun sequence
#=GS A0A0D0WNC0/1-117  DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus gattii species complex; Cryptococcus gattii VGIV; 
#=GS A0A225ZXJ8/1-117  AC A0A225ZXJ8
#=GS A0A225ZXJ8/1-117  OS Cryptococcus neoformans var. grubii c45
#=GS A0A225ZXJ8/1-117  DE DNA-directed RNA polymerase II subunit RPB11
#=GS A0A225ZXJ8/1-117  DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex; Cryptococcus neoformans; Cryptococcus neoformans var. grubii; 
#=GS F5HHL2/1-117      AC F5HHL2
#=GS F5HHL2/1-117      OS Cryptococcus neoformans var. neoformans B-3501A
#=GS F5HHL2/1-117      DE Uncharacterized protein
#=GS F5HHL2/1-117      DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex; Cryptococcus neoformans; Cryptococcus neoformans var. neoformans; 
#=GS A0A0D0UVI4/1-117  AC A0A0D0UVI4
#=GS A0A0D0UVI4/1-117  OS Cryptococcus gattii VGII Ram5
#=GS A0A0D0UVI4/1-117  DE Unplaced genomic scaffold supercont1.17, whole genome shotgun sequence
#=GS A0A0D0UVI4/1-117  DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus gattii species complex; Cryptococcus gattii VGII; 
#=GS A0A0D0WV26/1-117  AC A0A0D0WV26
#=GS A0A0D0WV26/1-117  OS Cryptococcus gattii EJB2
#=GS A0A0D0WV26/1-117  DE Unplaced genomic scaffold supercont1.217, whole genome shotgun sequence
#=GS A0A0D0WV26/1-117  DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus gattii species complex; Cryptococcus gattii VGI; 
#=GS A0A226BMJ6/1-117  AC A0A226BMJ6
#=GS A0A226BMJ6/1-117  OS Cryptococcus neoformans var. grubii Bt85
#=GS A0A226BMJ6/1-117  DE DNA-directed RNA polymerase II subunit RPB11
#=GS A0A226BMJ6/1-117  DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex; Cryptococcus neoformans; Cryptococcus neoformans var. grubii; 
#=GS J9VIJ3/1-117      AC J9VIJ3
#=GS J9VIJ3/1-117      OS Cryptococcus neoformans var. grubii H99
#=GS J9VIJ3/1-117      DE DNA-directed RNA polymerase II subunit RPB11
#=GS J9VIJ3/1-117      DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex; Cryptococcus neoformans; Cryptococcus neoformans var. grubii; 
#=GS A0A081CBL7/2-116  AC A0A081CBL7
#=GS A0A081CBL7/2-116  OS Moesziomyces antarcticus
#=GS A0A081CBL7/2-116  DE RBP11-like subunits of RNA polymerase
#=GS A0A081CBL7/2-116  DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Moesziomyces; Moesziomyces antarcticus; 
#=GS A0A2N8UMN7/2-116  AC A0A2N8UMN7
#=GS A0A2N8UMN7/2-116  OS Sporisorium reilianum f. sp. reilianum
#=GS A0A2N8UMN7/2-116  DE Related to DNA-directed RNA polymerase 13.3K chain
#=GS A0A2N8UMN7/2-116  DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Sporisorium; Sporisorium reilianum; 
#=GF SQ 26
A8HRP7/1-114              MNQPDRYVQFVLPEGERKVKYKADTKLKDAGTFTFRSEDHTIGNLLRMQLHADKSTVFAGYRIPHPLEPVMVVKVQ-TNGTKSCEDAMMHALEDLANEYHIMLEEFDQAVSAASM--------
A0A0D1E1J3/2-116          TNAPNRFDLFILGPDEKRVEIVEDTKIPNAATFWFNKEDHTLGNMLRHAVLANPAVLFCGYKVPHPLEPKVFVKIQ-TDGSLTPTDALKQGSQKLIAQISSLKGAWRTEVQMSGAG-------
B8C993/1-123              MNAPERSSAFLLDDDEEKIEYQPDTKVSNAGTFTFNKEDHTVANLLRMQLLRDPAVKFAGYMHPHPLIHKIHLKIQTTTSQVAPAETLSAAIEDLSNETDHLLTQVTDAIDKWKKENETGMMG
A9V2R7/1-118              MNAPDPFESFRLEDGEAKITYEPDSKVPNAGTFRMNREDHTVGNLLASQLAKDPRVLFAGYKVPHPLEHYILLRVH-TTAQYSPKEALKQALHDVIYDVAHLQSSLREQLPSEEFDNRM----
E6R0W5/1-117              MNQPNRVDSWLLQDDEKPLTITEDPKLPNASTIVIRRQDHTLGNMLRAQLMLDPTVLFAGYKVPHPLENDILLKIQ-TDERSNPAEALKRACHELIRQTVHIKAQFQQQAKNIEMG-----MG
A0A317XU23/2-119          TNAPNRFDLFILGPDERRVEIVEDTKIPNAATFWFNKEDHTMGNMLRHAVLENPAVLFCGYKVPHPLEPKVFVKIQ-TDGSLTPTDALRQGCTKLIAQISSLKQAWRTEVQMSGAGTVE----
R9PBD2/2-116              TNAPNRFDLFILGPDEKRVEIVEDTKIPNAATFWFNKEDHTLGNMLRHAVLANPSVLFCGYKVPHPLEPKVFVKIQ-TDGSITPTDALTQASQKLIAQISSLKGAWRTEVQMSGAG-------
A0A0F7S367/2-116          TNAPNRFDLFILGPDEKRVEIVEDTKIPNAATFWFNKEDHTLGNMLRHAVLANPAVLFCGYKVPHPLEPKVFVKIQ-TDGSIMPTDALKQGSQKLIAQISSLKGAWRTEVQMSGAG-------
M9LTZ5/2-116              TNAPNRFDLFILGPDEKRVEIVEDTKIPNAATFWFNKEDHTLGNMLRHAVLANPAVLFCGYKVPHPLEPKVFVKIQ-TDGSITPTDALKQGCTKLIAQISSLKGAWRTEVQMSGAG-------
A0A077R1R6/2-116          TNAPNRFDLFILGPDEKRVEVVEDTKIPNAATFWFNKEDHTLGNMLRHAVLANPAVLFCGYKVPHPLEPKVFVKIQ-TDGSLTPTDALKQGCTKLIAQISSLKGAWRTEVQMSGAG-------
Q5KMB4/1-117              MNQPNRIDSWLLQDDEKPLTITEDPKLPNASTIVIRRQDHTLGNMLRAQLMLDPTVLFAGYKVPHPLENDILLKIQ-TDERSNPAEALKRACHELIRQTVHIKAQFQQQAKNIEMG-----MG
E6ZUZ5/2-116              TNAPNRFDLFILGPDEKRVEIVEDTKIPNAATFWFNKEDHTLGNMLRHAVLANPAVLFCGYKVPHPLEPKVFVKIQ-TDGSITPTDALKQGSQKLIAQISSLKGAWRTEVQMSGAG-------
I2FXZ1/2-116              TNAPNRFDLFILGPDEKRVEIVEDTKIPNAATFWFNKEDHTLGNMLRHAVLANPAVLFCGYKVPHPLEPKVFVKIQ-TDGSITPTDALKQGCQKLIAQISSLKGAWRTEVQMSGAG-------
W3VGQ9/2-116              TNAPNRFDLFILGPDEKRVEIVEDTKIPNAATFWFNKEDHTLGNMLRHAVLANPAVLFCGYKVPHPLEPKVFVKIQ-TDGSITPTDALKQGCTKLIAQISSLKGAWRTEVQMSGAG-------
A0A1K0H4Z9/2-116          TNAPNRFDLFILGPDEKRVEIVEDTKIPNAATFWFNKEDHTLGNMLRHAVLANPAVLFCGYKVPHPLEPKVFVKIQ-TDGSITPTDALKQGCQKLIAQISSLKGAWRTEVQMSGAG-------
A0A095BZT5/1-117          MNQPNRVDSWLLQDDEKPLTITEDPKLPNASTIVIRRQDHTLGNMLRAQLMLDPTVLFAGYKVPHPLENDILLKIQ-TDERSNPAEALKRACHELIRQTVHIKAQFQQQAKNIEMG-----MG
A0A0D0VU65/1-117          MNQPNRVDSWLLQDDEKPLTITEDPKLPNASTIVIRRQDHTLGNMLRAQLMLDPTVLFAGYKVPHPLENDILLKIQ-TDERSNPAEALKRACHELIRQTVHIKAQFQQQAKNIEMG-----MG
A0A0D0WNC0/1-117          MNQPNRVDSWLLQDDEKPLTITEDPKLPNASTIVIRRQDHTLGNMLRAQLMLDPTVLFAGYKVPHPLENDILLKIQ-TDERSNPAEALKRACHELIRQTVHIKSQFQQQAKNIEMG-----MG
A0A225ZXJ8/1-117          MNQPNRIDSWLLQDDEKPLTITEDPKLPNASTIVIRRQDHTLGNMLRAQLMLDPTVLFAGYKVPHPLENDILLKIQ-TDERSNPAEALKRACHELIRQTVHIKAQFQQQAKNIEMG-----MG
F5HHL2/1-117              MNQPNRIDSWLLQDDEKPLTITEDPKLPNASTIVIRRQDHTLGNMLRAQLMLDPTVLFAGYKVPHPLENDILLKIQ-TDERSNPAEALKRACHELIRQTVHIKAQFQQQAKNIEMG-----MG
A0A0D0UVI4/1-117          MNQPNRVDSWLLQDDEKPLTITEDPKLPNASTIVIRRQDHTLGNMLRAQLMLDPTVLFAGYKVPHPLENDILLKIQ-TDERSNPAEALKRACHELIRQTVHIKAQFQQQAKNIEMG-----MG
A0A0D0WV26/1-117          MNQPNRVDSWLLQDDEKPLTITEDPKLPNASTIVIRRQDHTLGNMLRAQLMLDPTVLFAGYKVPHPLENDILLKIQ-TDERSNPAEALKRACHELIRQTVHIKAQFQQQAKNIEMG-----MG
A0A226BMJ6/1-117          MNQPNRIDSWLLQDDEKPLTITEDPKLPNASTIVIRRQDHTLGNMLRAQLMLDPTVLFAGYKVPHPLENDILLKIQ-TDERSNPAEALKRACHELIRQTVHIKAQFQQQAKNIEMG-----MG
J9VIJ3/1-117              MNQPNRIDSWLLQDDEKPLTITEDPKLPNASTIVIRRQDHTLGNMLRAQLMLDPTVLFAGYKVPHPLENDILLKIQ-TDERSNPAEALKRACHELIRQTVHIKAQFQQQAKNIEMG-----MG
A0A081CBL7/2-116          TNAPNRFDLFILGPDEKRVEIVEDTKIPNAATFWFNKEDHTLGNMLRHAVLANPAVLFCGYKVPHPLEPKVFVKIQ-TDGSITPTDALKQGCTKLIAQISSLKGAWRTEVQMSGAG-------
A0A2N8UMN7/2-116          TNAPNRFDLFILGPDEKRVEIVEDTKIPNAATFWFNKEDHTLGNMLRHAVLANPAVLFCGYKVPHPLEPKVFVKIQ-TDGSLTPTDALKQGSQKLIAQISSLKGAWRTEVQMSGAG-------
#=GC scorecons            595978464559457965656469596789596355669997897984565468587959977999975465688809654358578865654587475456644454555445460000011
#=GC scorecons_70         _*_***_*___*__***___*_**_*_***_*____***********__*__**_***_*********__*_****_**____*_****_*___**_*___**____________*_______
#=GC scorecons_80         _*_***_____*__**_______*_*_***_*______***_*****______*_***_*********_____***_*_____*__**______**_*_________________________
#=GC scorecons_90         _*_*_*_____*___*_______*_*__**_*______***_**_**________*_*_**__****______***_*________**______*____________________________
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