# STOCKHOLM 1.0 #=GF ID 3.20.20.150/FF/000017 #=GF DE Endonuclease IV related protein #=GF AC 3.20.20.150/FF/000017 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 93.501 #=GS B8DYJ2/1-263 AC B8DYJ2 #=GS B8DYJ2/1-263 OS Dictyoglomus turgidum DSM 6724 #=GS B8DYJ2/1-263 DE Xylose isomerase domain protein TIM barrel #=GS B8DYJ2/1-263 DR ORG; Bacteria; Dictyoglomi; Dictyoglomia; Dictyoglomales; Dictyoglomaceae; Dictyoglomus; Dictyoglomus turgidum; #=GS B1L7K8/12-280 AC B1L7K8 #=GS B1L7K8/12-280 OS Candidatus Korarchaeum cryptofilum OPF8 #=GS B1L7K8/12-280 DE Endonuclease IV #=GS B1L7K8/12-280 DR ORG; Archaea; Candidatus Korarchaeota; Candidatus Korarchaeum; Candidatus Korarchaeum cryptofilum; #=GS Q7LX49/16-280 AC Q7LX49 #=GS Q7LX49/16-280 OS Saccharolobus solfataricus P2 #=GS Q7LX49/16-280 DE Endonuclease IV related protein #=GS Q7LX49/16-280 DR ORG; Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Saccharolobus; Saccharolobus solfataricus; #=GS Q8ZTG9/14-272 AC Q8ZTG9 #=GS Q8ZTG9/14-272 OS Pyrobaculum aerophilum str. IM2 #=GS Q8ZTG9/14-272 DE DNA-(Apurinic or apyrimidinic site) lyase (Endonuclease IV) #=GS Q8ZTG9/14-272 DR ORG; Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Pyrobaculum; Pyrobaculum aerophilum; #=GS Q8TK68/12-276 AC Q8TK68 #=GS Q8TK68/12-276 OS Methanosarcina acetivorans C2A #=GS Q8TK68/12-276 DE Uncharacterized protein #=GS Q8TK68/12-276 DR ORG; Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina; Methanosarcina acetivorans; #=GS Q5JFL1/20-280 AC Q5JFL1 #=GS Q5JFL1/20-280 OS Thermococcus kodakarensis KOD1 #=GS Q5JFL1/20-280 DE Endonuclease IV #=GS Q5JFL1/20-280 DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus; Thermococcus kodakarensis; #=GS Q57597/11-270 AC Q57597 #=GS Q57597/11-270 OS Methanocaldococcus jannaschii DSM 2661 #=GS Q57597/11-270 DE Uncharacterized protein MJ0133 #=GS Q57597/11-270 DR ORG; Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus; Methanocaldococcus jannaschii; #=GS A5I5J9/18-270 AC A5I5J9 #=GS A5I5J9/18-270 OS Clostridium botulinum A str. Hall #=GS A5I5J9/18-270 DE Putative endonuclease #=GS A5I5J9/18-270 DR ORG; Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; Clostridium botulinum; #=GS C3MNC2/10-273 AC C3MNC2 #=GS C3MNC2/10-273 OS Sulfolobus islandicus L.S.2.15 #=GS C3MNC2/10-273 DE Xylose isomerase domain protein TIM barrel #=GS C3MNC2/10-273 DR ORG; Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Sulfolobus; Sulfolobus islandicus; #=GS A0A0E3LAA1/12-276 AC A0A0E3LAA1 #=GS A0A0E3LAA1/12-276 OS Methanosarcina siciliae HI350 #=GS A0A0E3LAA1/12-276 DE Endonuclease IV #=GS A0A0E3LAA1/12-276 DR ORG; Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina; Methanosarcina siciliae; #=GS J7STX9/23-275 AC J7STX9 #=GS J7STX9/23-275 OS Clostridium sporogenes ATCC 15579 #=GS J7STX9/23-275 DE AP endonuclease, family 2 #=GS J7STX9/23-275 DR ORG; Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; Clostridium sporogenes; #=GS P95930/16-280 AC P95930 #=GS P95930/16-280 OS Saccharolobus solfataricus #=GS P95930/16-280 DE Endonuclease IV #=GS P95930/16-280 DR ORG; Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Saccharolobus; Saccharolobus solfataricus; #=GS A0A0E3LDR4/12-276 AC A0A0E3LDR4 #=GS A0A0E3LDR4/12-276 OS Methanosarcina siciliae C2J #=GS A0A0E3LDR4/12-276 DE Endonuclease IV #=GS A0A0E3LDR4/12-276 DR ORG; Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina; Methanosarcina siciliae; #=GS A0A0E3P2N5/12-276 AC A0A0E3P2N5 #=GS A0A0E3P2N5/12-276 OS Methanosarcina siciliae T4/M #=GS A0A0E3P2N5/12-276 DE Endonuclease IV #=GS A0A0E3P2N5/12-276 DR ORG; Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina; Methanosarcina siciliae; #=GS A0A0E1QGB1/18-270 AC A0A0E1QGB1 #=GS A0A0E1QGB1/18-270 OS Clostridium botulinum #=GS A0A0E1QGB1/18-270 DE AP endonuclease #=GS A0A0E1QGB1/18-270 DR ORG; Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; Clostridium botulinum; #=GS A0A175M7Q2/18-270 AC A0A175M7Q2 #=GS A0A175M7Q2/18-270 OS Clostridium botulinum B2 433 #=GS A0A175M7Q2/18-270 DE AP endonuclease #=GS A0A175M7Q2/18-270 DR ORG; Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; Clostridium botulinum; #=GF SQ 16 B8DYJ2/1-263 MKIGFSFLSLKTLSVKRAISITKKLGGNTLELFGDLVLFYRGKFC--EKPESIKEFAVKNDIFLTMHLPYIDINLASFNDEIWEKSIESILKAIEYGEKAGIKRAVLHPGGVPLSHLVLIFLAQRRLRKALEFILEKAEKYDV-EVCIENPYFEENDIFSNVDQFYKFIKGFGGKLKVCFDFGHAHISKKGIDYSLN------------LLKPFITHVHIH------DNHGE-KDEHLSLGKG-SIDFKKYLDFLRNFD--GTIILEINSLKDKREDLKRSVEIIKG---E B1L7K8/12-280 ---GYP-IDAPKE---RAFSYLREIGLDAMEY-----QAVRAIPKNEDVLSWVRKEASENDIMLSLHAPYA-INLCSEE--KGEASIKRLIDSGIAASKMGAGHITFHPGYYGKMSGEDAL---RAAIEALKRVRDGLNSLGI-NLELGPETTGKPSQLGSLDEVLRMSEEVDG-VRPTIDFAHIHAREGGSIRGRGDYERILRTIEGRLGD--LNGLIIHFTEVELAKSGIGERMHHDLGSGYGPPFEPLAEIIAEYGLRWIVISESPLLERDSVKMRALYMSALSKVKD Q7LX49/16-280 --AGVP-HSAKKKNTVEGIRTVKELGLNAMEV-----EFVQGVRMSKETAEETGQVARELGVRLSVHAPYF-INLCSEEKEKIEASKQRILDTADRAELMGADAIAIHIAFYGKMTPEECY---QNVKEGLEEVIDKAREMGIRNVKFGVETMAKETAFGTLDEVISISKELKG-VIPYIDWAHTFARQGGEID----YGKIIDRLIKELG---LTHINSHFESLVYRRGKY-VDEHIPIDAN-APPFEPLAKELLKRDISITLICESPELERDALKMKEVLERLGY---- Q8ZTG9/14-272 -------FVVKAKSTLDAVKVVRELGLNAMEV-----EFVQGVRMSRELAKQVGKAAQDYQVKLSVHAPYF-INLCSEEADKVEKSRQRLVDSLDRAYYMGAWVVVVHAAYYGKLGPERCY---EKVKEELEKAYKE-SGIGS-GVYIGVEITARTNQFGSVEEAFRLGKELSF-VVPVIDWGHLYARNNGSIN----YGEILDLWAREFG---NAHMHTHFTSVRYRNGKF-VDEHEPIERN-MPPFEPLARELKNRDITITLICESPLLEKDALLMKEILEQVGV---- Q8TK68/12-276 ---GVP-KSAKASNSPAGIERVRELGLDCMEL-----EFVQGVRMSEKGAGNVLETSRKENIALSVHAPYY-INLNSPEEEKLQASMERIYQAARIGSLCGAESIVLHAAFYQKSNKQAVY---ENVSKALGELAEQLQAENI-PAVLRPETMGKRTQFGTLEEVLALSEEIEG-VMPCLDFSHIHAR-EGKENSYPEFTAILSKVEETLGKDGLANMHMHISGIEYNRNG--EKRHLVLKES-DFNYPELLKALKEFEVKGFAICESPNLEEDALLLKKTYME------- Q5JFL1/20-280 -----------KPSTITGIEHVRNLGLDAMEL-----EFVRGVNISPELAKKIKYVAKKNDVLLTAHAPYY-INLNAKEKAKVEASKKRIIQSAERLYEAGGWSVVFHAGYYLKQPPESVY---QRILEALKDIQKELMDKGV-KVWIRPELTGKPTQFGDLKEIVKLSEELEM-VLPTIDFAHAHARNRGKCNSVEEWREMLSFIEDRLGREALDNMHIHMSGIEYTDKG--EKRHLPLQES-DMNWEDLLRVLKEFRVKGVVISESPNIEEDALLMKKKYEEIK----- Q57597/11-270 -TAGVP---ISAEDEFKAVDVLRKLNLGAMEL-----EFVKGVYMKEDYAKKLKEYG--EDIIFSAHAPHY-INLNANEEEKVENSIRRIIKTAKVLNNCG-KNLVFHPGYYLKRSKEVTY---NRIKSNIQRILDKLEALNL-NVMLRPETTGKTTQFGDIDETLKLCFELN--ILPCIDFSHIYARSRGVINDYNSFYKILEKVENVLGKEAIKDMHIHLSGIEYGKGG--ERRHLPLNES-NFNYRDVLKALKDFDASGTVICESPMLEYDAVLLMKCY--------- A5I5J9/18-270 ----------TKFNYKSGITYLNNIGLDAMEL-----PFVRSVNVTDKNKEGILEEKNNNNFYLSAHGSYF-INLNADEIEKQEKSMERIIKGAEGLKQVQGRSLIFHPGFYLKDSKEETF---KTILENLKKLPD------L-GVDYRLETTGKGTQFGSLEENVALCKEVDT-CKLCIDFSHIHARSNGGLKSYKDFYNILSYVEKNLGRSALDDMHIHLSGIHYSEKG--ERNHLPFEES-DFNYIACLKAFKDFDIKGCVICESPILEKDALLLKNSYY-------- C3MNC2/10-273 ---GIP-HSSKKKNTIEGIRTVKELGLNAMEV-----EFVQGVRMSRETAEETGQVAKELGVRLSVHAPYF-INLCSEEKDKIDASKQRILDTADRAELMGADAIAIHIAFYGKMSPEECY---QNVKEGLAEVIDKAKEMGIKNVKFGVETMAKETAFGTLDEVISISKELKG-VIPYIDWAHTFARQGGEID----YGKIIDRLIKELG---LTHINSHFESLVSRKGKY-VDEHIPIDAN-APPFEPLAKELLKRDISITLICESPELERDALKMKEVLESLGY---- A0A0E3LAA1/12-276 ---GVP-RSAKASNSPAGIERIRELGLDCMEL-----EFVQGVRMREKGAGNVLNTARKENVTLSVHAPYY-INLNSPEEEKLKASVERIYQAARIGSLCGAESIVLHAAFYQKSDKQAVY---ENVSKALGELAEQLRAENI-PAVLRPETMGKRTQFGTLEEVLALSEEIEG-VMPCLDFSHIHAR-EGKENSYPEFRAILSKVEDSLGKEGLANMHMHISGIEYNRNG--EKRHLVLKES-DFNYPELLKVLKEFEVKGLAICESPNLEEDALLLKKTYME------- J7STX9/23-275 ----------TKFNYKSGITYLNNIGLDAMEL-----PFVRSVNVTDKNKEGILEEKNNSNFYLSAHGSYF-INLNADEIEKQEKSLERIIKGAEGLKKVQGRSLIFHPGFYLKDSKEETF---KTILENLKKLPD------L-GVDYRLETTGKGTQFGSLEENVALCKEVAT-CKLCIDFSHIHARSNGGLKTYKDFYNILSYVEKNLGRSALDDMHIHLSGIHYSEKG--ERNHLPFEES-DFNYIACLKAFKDFNINGCIICESPILEKDALLLKNSYY-------- P95930/16-280 --AGVP-HSAKKKNTVEGIRTVKELGLNAMEV-----EFVQGVRMSKETAEETGQVARELGVRLSVHAPYF-INLCSEEKEKIEASKQRILDTADRAELMGADAIAIHIAFYGKMTPEECY---QNVKEGLEEVIDKAREMGIRNVKFGVETMAKETAFGTLDEVISISKELKG-VIPYIDWAHTFARQGGEID----YGKIIDRLIKELG---LTHINSHFESLVYRRGKY-VDEHIPIDAN-APPFEPLAKELLKRDISITLICESPELERDALKMKEVLERLGY---- A0A0E3LDR4/12-276 ---GVP-RSAKASNSPAGIERIRELGLDCMEL-----EFVQGVRMREKGAGNVLNTARKENVTLSVHAPYY-INLNSPEEEKLKASVERIYQAARIGSLCGAESIVLHAAFYQKSDKQAVY---ENVSKALGELAEQLRAENI-PAVLRPETMGKRTQFGTLEEVLALSEEIEG-VMPCLDFSHIHAR-EGKENSYPEFRAILSKVEDSLGKEGLANMHMHISGIEYNRNG--EKRHLVLKES-DFNYPELLKVLKEFEVKGLAICESPNLEEDALLLKKTYME------- A0A0E3P2N5/12-276 ---GVP-RSAKASNSPAGIERIRELGLDCMEL-----EFVQGVRMREKGAGNVLNTARKENVTLSVHAPYY-INLNSPEEEKLKASVERIYQAARIGSLCGAESIVLHAAFYQKSDKQAVY---ENVSKALGELAEQLRAENI-PAVLRPETMGKRTQFGTLEEVLALSEEIEG-VMPCLDFSHIHAR-EGKENSYPEFRAILSKVEDSLGKEGLANMHMHISGIEYNRNG--EKRHLVLKES-DFNYPELLKVLKEFEVKGLAICESPNLEEDALLLKKTYME------- A0A0E1QGB1/18-270 ----------TKFNYKSGITYLNNIGLDAMEL-----PFVRSVNVTDKNKEGILEEKNNNNFYLSAHGSYF-INLNADEIEKQEKSMERIIKGAEGLKQVQGRSLIFHPGFYLKDSKEETF---KTILENLKKLPD------L-GVDYRLETTGKGTQFGSLEENVALCKEVDT-CKLCIDFSHIHARSNGGLKSYKDFYNILSYVEKNLGRSALDDMHIHLSGIHYSEKG--ERNHLPFEES-DFNYIACLKAFKDFDIKGCVICESPILEKDALLLKNSYY-------- A0A175M7Q2/18-270 ----------TKFNYKSGITYLNNIGLDAMEL-----PFVRSVNVTDKNKEGILEEKNNNNFYLSAHGSYF-INLNADEIEKQEKSMERIIKGAEGLKQVQGRSLIFHPGFYLKDSKEETF---KTILENLKKLPD------L-GVDYRLETTGKGTQFGSLEENVALCKEVDT-CKLCIDFSHIHARSNGGLKSYKDFYNILSYVEKNLGRSALDDMHIHLSGIHYSEKG--ERNHLPFEES-DFNYIACLKAFKDFDIKGCVICESPILEKDALLLKNSYY-------- #=GC scorecons 000322012245253236733555687658960000047766745335355353435343552875956850999563836736593577454643433464345559466737344634600044635484453622221350462454765673658847684446558544053556965956772493343212523654244338731264466594445353446005549555445044563345636555553435969773884776467435311000000 #=GC scorecons_70 _________________**_____***__**_______**_**____________________**_*_**__***_*_*__*_*_*__**___*______*______*___*_*______*_________*______________*____*___*_*_**_***______*________**__*_***__*__________*_______**___*__*__*_______________*__________*____*_*_________*****_**_***_**____________ #=GC scorecons_80 __________________*______**__**_______**_______________________**_*__*__***___*__*___*__**_________________*___*_*________________*___________________*___*___**___*______*_________*__*__**__*__________________**_________*_______________*___________________________*_***_**_*____*____________ #=GC scorecons_90 _________________________*___**________________________________*__*__*__***__________*_____________________*______________________*___________________________*____*________________*__*______*__________________*__________*_______________*___________________________*_*___*____________________ //