# STOCKHOLM 1.0 #=GF ID 3.10.450.40/FF/000020 #=GF DE DNA-directed RNA polymerase subunit #=GF AC 3.10.450.40/FF/000020 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 90.266 #=GS Q5D869/1738-1833 AC Q5D869 #=GS Q5D869/1738-1833 OS Arabidopsis thaliana #=GS Q5D869/1738-1833 DE DNA-directed RNA polymerase V subunit 1 #=GS Q5D869/1738-1833 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; #=GS Q5D869/1738-1833 DR GO; GO:0000419; GO:0003899; GO:0005515; GO:0005634; GO:0005730; GO:0006306; GO:0016604; GO:0030422; GO:0035194; GO:0050832; #=GS Q5D869/1738-1833 DR EC; 2.7.7.6; #=GS Q9LQ02/1325-1422 AC Q9LQ02 #=GS Q9LQ02/1325-1422 OS Arabidopsis thaliana #=GS Q9LQ02/1325-1422 DE DNA-directed RNA polymerase IV subunit 1 #=GS Q9LQ02/1325-1422 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; #=GS Q9LQ02/1325-1422 DR GO; GO:0000418; GO:0005515; GO:0005634; GO:0005654; GO:0010495; GO:0030422; GO:0031047; #=GS Q9LQ02/1325-1422 DR EC; 2.7.7.6; #=GS A0A1P8ANM9/1311-1408 AC A0A1P8ANM9 #=GS A0A1P8ANM9/1311-1408 OS Arabidopsis thaliana #=GS A0A1P8ANM9/1311-1408 DE DNA-directed RNA polymerase subunit #=GS A0A1P8ANM9/1311-1408 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; #=GS A0A1P8ANM8/1016-1114 AC A0A1P8ANM8 #=GS A0A1P8ANM8/1016-1114 OS Arabidopsis thaliana #=GS A0A1P8ANM8/1016-1114 DE Nuclear RNA polymerase D1A #=GS A0A1P8ANM8/1016-1114 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; #=GS A9SIX8/2209-2303 AC A9SIX8 #=GS A9SIX8/2209-2303 OS Physcomitrella patens #=GS A9SIX8/2209-2303 DE DNA-directed RNA polymerase subunit #=GS A9SIX8/2209-2303 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella; Physcomitrella patens; #=GS A0A0C4K0P8/1882-1976 AC A0A0C4K0P8 #=GS A0A0C4K0P8/1882-1976 OS Physcomitrella patens #=GS A0A0C4K0P8/1882-1976 DE DNA-directed RNA polymerase subunit #=GS A0A0C4K0P8/1882-1976 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella; Physcomitrella patens; #=GS F6HUI3/1308-1401 AC F6HUI3 #=GS F6HUI3/1308-1401 OS Vitis vinifera #=GS F6HUI3/1308-1401 DE DNA-directed RNA polymerase subunit #=GS F6HUI3/1308-1401 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Vitales; Vitaceae; Viteae; Vitis; Vitis vinifera; #=GS I1IV91/1752-1846 AC I1IV91 #=GS I1IV91/1752-1846 OS Brachypodium distachyon #=GS I1IV91/1752-1846 DE DNA-directed RNA polymerase subunit #=GS I1IV91/1752-1846 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Brachypodieae; Brachypodium; Brachypodium distachyon; #=GS K7K551/1340-1431 AC K7K551 #=GS K7K551/1340-1431 OS Glycine max #=GS K7K551/1340-1431 DE DNA-directed RNA polymerase subunit #=GS K7K551/1340-1431 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine max; #=GS R0FV63/1731-1825 AC R0FV63 #=GS R0FV63/1731-1825 OS Capsella rubella #=GS R0FV63/1731-1825 DE DNA-directed RNA polymerase subunit #=GS R0FV63/1731-1825 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Capsella; Capsella rubella; #=GS D7LEE8/1738-1831 AC D7LEE8 #=GS D7LEE8/1738-1831 OS Arabidopsis lyrata subsp. lyrata #=GS D7LEE8/1738-1831 DE DNA-directed RNA polymerase subunit #=GS D7LEE8/1738-1831 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; #=GS A0A1D6QSZ1/1729-1818 AC A0A1D6QSZ1 #=GS A0A1D6QSZ1/1729-1818 OS Zea mays #=GS A0A1D6QSZ1/1729-1818 DE DNA-directed RNA polymerase subunit #=GS A0A1D6QSZ1/1729-1818 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS A0A445HW56/1340-1431 AC A0A445HW56 #=GS A0A445HW56/1340-1431 OS Glycine soja #=GS A0A445HW56/1340-1431 DE DNA-directed RNA polymerase subunit #=GS A0A445HW56/1340-1431 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine soja; #=GS A0A1D6QSY4/1712-1801 AC A0A1D6QSY4 #=GS A0A1D6QSY4/1712-1801 OS Zea mays #=GS A0A1D6QSY4/1712-1801 DE DNA-directed RNA polymerase subunit #=GS A0A1D6QSY4/1712-1801 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS A0A1D6QSX8/1657-1746 AC A0A1D6QSX8 #=GS A0A1D6QSX8/1657-1746 OS Zea mays #=GS A0A1D6QSX8/1657-1746 DE DNA-directed RNA polymerase subunit #=GS A0A1D6QSX8/1657-1746 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS A0A1D6QT00/1686-1775 AC A0A1D6QT00 #=GS A0A1D6QT00/1686-1775 OS Zea mays #=GS A0A1D6QT00/1686-1775 DE DNA-directed RNA polymerase subunit #=GS A0A1D6QT00/1686-1775 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS A0A1D6QSZ6/1694-1783 AC A0A1D6QSZ6 #=GS A0A1D6QSZ6/1694-1783 OS Zea mays #=GS A0A1D6QSZ6/1694-1783 DE DNA-directed RNA polymerase subunit #=GS A0A1D6QSZ6/1694-1783 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS A0A1D6QT14/1395-1484 AC A0A1D6QT14 #=GS A0A1D6QT14/1395-1484 OS Zea mays #=GS A0A1D6QT14/1395-1484 DE DNA-directed RNA polymerase V subunit 1 #=GS A0A1D6QT14/1395-1484 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS A0A1D6QT13/1499-1588 AC A0A1D6QT13 #=GS A0A1D6QT13/1499-1588 OS Zea mays #=GS A0A1D6QT13/1499-1588 DE DNA-directed RNA polymerase V subunit 1 #=GS A0A1D6QT13/1499-1588 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS A0A1D6QT10/1556-1645 AC A0A1D6QT10 #=GS A0A1D6QT10/1556-1645 OS Zea mays #=GS A0A1D6QT10/1556-1645 DE DNA-directed RNA polymerase V subunit 1 #=GS A0A1D6QT10/1556-1645 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS A0A1D6QSX3/1696-1785 AC A0A1D6QSX3 #=GS A0A1D6QSX3/1696-1785 OS Zea mays #=GS A0A1D6QSX3/1696-1785 DE DNA-directed RNA polymerase subunit #=GS A0A1D6QSX3/1696-1785 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS A0A1D6QSY6/940-1029 AC A0A1D6QSY6 #=GS A0A1D6QSY6/940-1029 OS Zea mays #=GS A0A1D6QSY6/940-1029 DE DNA-directed RNA polymerase V subunit 1 #=GS A0A1D6QSY6/940-1029 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS A0A1D6QSX2/1070-1159 AC A0A1D6QSX2 #=GS A0A1D6QSX2/1070-1159 OS Zea mays #=GS A0A1D6QSX2/1070-1159 DE DNA-directed RNA polymerase V subunit 1 #=GS A0A1D6QSX2/1070-1159 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS K7LMQ8/1340-1431 AC K7LMQ8 #=GS K7LMQ8/1340-1431 OS Glycine max #=GS K7LMQ8/1340-1431 DE DNA-directed RNA polymerase subunit #=GS K7LMQ8/1340-1431 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine max; #=GS I1JA29/1343-1434 AC I1JA29 #=GS I1JA29/1343-1434 OS Glycine max #=GS I1JA29/1343-1434 DE DNA-directed RNA polymerase subunit #=GS I1JA29/1343-1434 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine max; #=GS A0A0R0HJE9/1263-1354 AC A0A0R0HJE9 #=GS A0A0R0HJE9/1263-1354 OS Glycine max #=GS A0A0R0HJE9/1263-1354 DE Uncharacterized protein #=GS A0A0R0HJE9/1263-1354 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine max; #=GF SQ 26 Q5D869/1738-1833 ----------ELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMK- Q9LQ02/1325-1422 -IPMSLLRTIFTWKNIELLSQSLKRILHS--YEINELLNERDEGLV-KMVLQLHPNSVEKIGPGVKGIRVAK-SKHGDSCCFEVVRIDGTFEDFSYHKCVLGA---- A0A1P8ANM9/1311-1408 -IPMSLLRTIFTWKNIELLSQSLKRILHS--YEINELLNERDEGLV-KMVLQLHPNSVEKIGPGVKGIRVAK-SKHGDSCCFEVVRIDGTFEDFSYHKCVLGA---- A0A1P8ANM8/1016-1114 GIPMSLLRTIFTWKNIELLSQSLKRILHS--YEINELLNERDEGLV-KMVLQLHPNSVEKIGPGVKGIRVAK-SKHGDSCCFEVVRIDGTFEDFSYHKCVLGA---- A9SIX8/2209-2303 -----------ECKDIDDLVKSMRRILFNPRNELGGRLSDEDDELV-QTVLAYHPKLSEKAGCGTAYIKVDRSAGFVNNRCFWLVRTDGSEIDFSFHKCLKEKVARE A0A0C4K0P8/1882-1976 -----------ECKDIDDLVKSMRRILFNPRNELGGRLSDEDDELV-QTVLAYHPKLSEKAGCGTAYIKVDRSAGFVNNRCFWLVRTDGSEIDFSFHKCLKEKVARE F6HUI3/1308-1401 ------LRSFLSLNDIQKLSRRLKFILQK--YPINHQLSEIDKTTL-MMALYFHPRRDEKIGPGAQNIKVRYHSKYHNTRCFSLVRTDGTEEDFSYHKCVHGA---- I1IV91/1752-1846 K---------KILREIEPIVSMVRKIFRE--SCDGVRLPLEDEKFIKESILEHHPEKERKVPGEIDHIMVNKHHIFQESRCFYVVLADGTHTDFSYNKCMDNYVRK- K7K551/1340-1431 -------RNFVTVNDIQKLTFASRCILNK--YSIDELLSESDRSTM-LRVLNFHPHKSEKFGIGPQDIKVGWHPKYKDSRCFHIIRTDGTVEDFSYRKCILG----- R0FV63/1731-1825 ----------ELLSDVEPVMRTLRKIMHMSGYPDGEPISDDDKTFVLEKILNFHPEKERKLGSAVDFITVDKHTTFTDTRCFFVVSTDGAKQDFSYRKSLNNYLM-- D7LEE8/1738-1831 ----------ELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYL--- A0A1D6QSZ1/1729-1818 --------------EVEPIKLRVRSIFRE--ACDGVRLNPEDEKFILEKVLEHHPEKQSKVSGEIDYLTVNKHQTFQDTRCFFVVSTDGSQADFSYLKCLENFVRK- A0A445HW56/1340-1431 -------RNFVTVNDIQKLTFASRCILNK--YSIDELLSESDRSTM-LRVLNFHPRKSEKFGIGPQDIKVGWHPKYKDSRCFHIVRIDGTVEDFSYRKCILG----- A0A1D6QSY4/1712-1801 --------------EVEPIKLRVRSIFRE--ACDGVRLNPEDEKFILEKVLEHHPEKQSKVSGEIDYLTVNKHQTFQDTRCFFVVSTDGSQADFSYLKCLENFVRK- A0A1D6QSX8/1657-1746 --------------EVEPIKLRVRSIFRE--ACDGVRLNPEDEKFILEKVLEHHPEKQSKVSGEIDYLTVNKHQTFQDTRCFFVVSTDGSQADFSYLKCLENFVRK- A0A1D6QT00/1686-1775 --------------EVEPIKLRVRSIFRE--ACDGVRLNPEDEKFILEKVLEHHPEKQSKVSGEIDYLTVNKHQTFQDTRCFFVVSTDGSQADFSYLKCLENFVRK- A0A1D6QSZ6/1694-1783 --------------EVEPIKLRVRSIFRE--ACDGVRLNPEDEKFILEKVLEHHPEKQSKVSGEIDYLTVNKHQTFQDTRCFFVVSTDGSQADFSYLKCLENFVRK- A0A1D6QT14/1395-1484 --------------EVEPIKLRVRSIFRE--ACDGVRLNPEDEKFILEKVLEHHPEKQSKVSGEIDYLTVNKHQTFQDTRCFFVVSTDGSQADFSYLKCLENFVRK- A0A1D6QT13/1499-1588 --------------EVEPIKLRVRSIFRE--ACDGVRLNPEDEKFILEKVLEHHPEKQSKVSGEIDYLTVNKHQTFQDTRCFFVVSTDGSQADFSYLKCLENFVRK- A0A1D6QT10/1556-1645 --------------EVEPIKLRVRSIFRE--ACDGVRLNPEDEKFILEKVLEHHPEKQSKVSGEIDYLTVNKHQTFQDTRCFFVVSTDGSQADFSYLKCLENFVRK- A0A1D6QSX3/1696-1785 --------------EVEPIKLRVRSIFRE--ACDGVRLNPEDEKFILEKVLEHHPEKQSKVSGEIDYLTVNKHQTFQDTRCFFVVSTDGSQADFSYLKCLENFVRK- A0A1D6QSY6/940-1029 --------------EVEPIKLRVRSIFRE--ACDGVRLNPEDEKFILEKVLEHHPEKQSKVSGEIDYLTVNKHQTFQDTRCFFVVSTDGSQADFSYLKCLENFVRK- A0A1D6QSX2/1070-1159 --------------EVEPIKLRVRSIFRE--ACDGVRLNPEDEKFILEKVLEHHPEKQSKVSGEIDYLTVNKHQTFQDTRCFFVVSTDGSQADFSYLKCLENFVRK- K7LMQ8/1340-1431 -------RNFVTVNDIQKLTFASRCILNK--YSIDELLSESDRSTM-LRVLNFHPRKSEKFGIGPQDIKVGWHPKYKDSRCFHIVRIDGTVEDFSYRKCILG----- I1JA29/1343-1434 -------RNFVTVNDIQKLTFASRCILNK--YSIDELLSESDRSTM-LRVLNFHPHKSEKFGIGPQDIKVGWHPKYKDSRCFHIIRTDGTVEDFSYRKCILG----- A0A0R0HJE9/1263-1354 -------RNFVTVNDIQKLTFASRCILNK--YSIDELLSESDRSTM-LRVLNFHPRKSEKFGIGPQDIKVGWHPKYKDSRCFHIVRIDGTVEDFSYRKCILG----- #=GC scorecons 00000001001112676463344749644004345447544954461447945994544946364446494554463757993685699534999849763522110 #=GC scorecons_70 ______________***______*_*___________*___*_______**__**____*_______*_*_____*_*_***_**_***___****_**________ #=GC scorecons_80 _______________________*_*___________*___*_______**__**____*_________*_______*_***__*__**___****_**________ #=GC scorecons_90 _________________________*_______________*________*__**____*_________*__________**__*__**___****_*_________ //