# STOCKHOLM 1.0
#=GF ID 3.10.20.350/FF/000002
#=GF DE Replicase polyprotein 1a
#=GF AC 3.10.20.350/FF/000002
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 10.924
#=GS 2m0aA01/18-110  AC P0C6V0
#=GS 2m0aA01/18-110  OS Murine hepatitis virus strain A59
#=GS 2m0aA01/18-110  DE Replicase polyprotein 1a
#=GS 2m0aA01/18-110  DR CATH; 2m0a; A:18-110; 
#=GS 2m0aA01/18-110  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS 2m0aA01/18-110  DR GO; GO:0097264; 
#=GS 2m0aA01/18-110  DR EC; 3.4.19.12; 3.4.22.69; 
#=GS P0C6X8/850-942  AC P0C6X8
#=GS P0C6X8/850-942  OS Murine hepatitis virus strain 2
#=GS P0C6X8/850-942  DE Replicase polyprotein 1ab
#=GS P0C6X8/850-942  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS P0C6X8/850-942  DR EC; 2.7.7.48; 3.4.19.12; 3.4.22.69; 3.6.4.12; 3.6.4.13; 
#=GS P0C6V1/850-942  AC P0C6V1
#=GS P0C6V1/850-942  OS Murine hepatitis virus strain JHM
#=GS P0C6V1/850-942  DE Replicase polyprotein 1a
#=GS P0C6V1/850-942  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS P0C6V1/850-942  DR GO; GO:0004197; GO:0097264; 
#=GS P0C6V1/850-942  DR EC; 3.4.19.12; 3.4.22.69; 
#=GS P0C6Y0/850-942  AC P0C6Y0
#=GS P0C6Y0/850-942  OS Murine hepatitis virus strain JHM
#=GS P0C6Y0/850-942  DE Replicase polyprotein 1ab
#=GS P0C6Y0/850-942  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS P0C6Y0/850-942  DR EC; 2.7.7.48; 3.4.19.12; 3.4.22.69; 3.6.4.12; 3.6.4.13; 
#=GS P0C6X9/850-942  AC P0C6X9
#=GS P0C6X9/850-942  OS Murine hepatitis virus strain A59
#=GS P0C6X9/850-942  DE Replicase polyprotein 1ab
#=GS P0C6X9/850-942  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS P0C6X9/850-942  DR EC; 2.7.7.48; 3.4.19.12; 3.4.22.69; 3.6.4.12; 3.6.4.13; 
#=GS P0C6V0/850-942  AC P0C6V0
#=GS P0C6V0/850-942  OS Murine hepatitis virus strain A59
#=GS P0C6V0/850-942  DE Replicase polyprotein 1a
#=GS P0C6V0/850-942  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS P0C6V0/850-942  DR GO; GO:0097264; 
#=GS P0C6V0/850-942  DR EC; 3.4.19.12; 3.4.22.69; 
#=GS P0C6U9/850-942  AC P0C6U9
#=GS P0C6U9/850-942  OS Murine hepatitis virus strain 2
#=GS P0C6U9/850-942  DE Replicase polyprotein 1a
#=GS P0C6U9/850-942  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS P0C6U9/850-942  DR EC; 3.4.19.12; 3.4.22.69; 
#=GS I7AWB5/850-942  AC I7AWB5
#=GS I7AWB5/850-942  OS Murine coronavirus
#=GS I7AWB5/850-942  DE Polyprotein ORF1ab
#=GS I7AWB5/850-942  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS C6GHR8/849-941  AC C6GHR8
#=GS C6GHR8/849-941  OS Rat coronavirus Parker
#=GS C6GHR8/849-941  DE Orf1ab polyprotein
#=GS C6GHR8/849-941  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS C6GHR9/849-941  AC C6GHR9
#=GS C6GHR9/849-941  OS Rat coronavirus Parker
#=GS C6GHR9/849-941  DE Orf1a polyprotein
#=GS C6GHR9/849-941  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS Q9J3E9/847-939  AC Q9J3E9
#=GS Q9J3E9/847-939  OS Murine hepatitis virus
#=GS Q9J3E9/847-939  DE RNA-directed RNA polymerase
#=GS Q9J3E9/847-939  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS C0KYS8/850-942  AC C0KYS8
#=GS C0KYS8/850-942  OS Murine coronavirus RA59/SJHM
#=GS C0KYS8/850-942  DE ORF1a polyprotein
#=GS C0KYS8/850-942  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS C0KYT7/850-942  AC C0KYT7
#=GS C0KYT7/850-942  OS Murine coronavirus repA59/RJHM
#=GS C0KYT7/850-942  DE ORF1a polyprotein
#=GS C0KYT7/850-942  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS C0KYQ8/850-942  AC C0KYQ8
#=GS C0KYQ8/850-942  OS Murine coronavirus RA59/R13
#=GS C0KYQ8/850-942  DE ORF1a polyprotein
#=GS C0KYQ8/850-942  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS I7B5F2/850-942  AC I7B5F2
#=GS I7B5F2/850-942  OS Murine coronavirus
#=GS I7B5F2/850-942  DE Polyprotein ORF1a
#=GS I7B5F2/850-942  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS Q7M006/482-574  AC Q7M006
#=GS Q7M006/482-574  OS Murine hepatitis virus
#=GS Q7M006/482-574  DE RNA-directed RNA polymerase
#=GS Q7M006/482-574  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GF SQ 16
2m0aA01/18-110          TRKIKITFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDAVESTLSPCKEHDVIGTKVCALLDRLAGDYVYLFDEGGDEVIAPRMYCSFS
P0C6X8/850-942          TRKIKINFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDAVESTLSPCKEHDVIGTKVCALLNRLAEDYVYLFDEGGEEVIAPKMYCSFS
P0C6V1/850-942          TRKIKIIFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDAVESTLSPCKEHGVIGTKVCALLERLVDDYVYLFDEGGEEVIASRMYCSFS
P0C6Y0/850-942          TRKIKIIFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDAVESTLSPCKEHGVIGTKVCALLERLVDDYVYLFDEGGEEVIASRMYCSFS
P0C6X9/850-942          TRKIKITFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDAVESTLSPCKEHDVIGTKVCALLDRLAGDYVYLFDEGGDEVIAPRMYCSFS
P0C6V0/850-942          TRKIKITFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDAVESTLSPCKEHDVIGTKVCALLDRLAGDYVYLFDEGGDEVIAPRMYCSFS
P0C6U9/850-942          TRKIKINFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDAVESTLSPCKEHDVIGTKVCALLNRLAEDYVYLFDEGGEEVIAPKMYCSFS
I7AWB5/850-942          TRKIKIIFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDAVESTLSPCKEHGVIGTKVCALLERVVDDYVYLFDEGGEEVIASRMYCSFS
C6GHR8/849-941          TRKIKIIFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDAVESTLSPCKEHDVIGTKVCALLDRLAEDYVYLFDEGGDEVIAPRMYCSFS
C6GHR9/849-941          TRKIKIIFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDAVESTLSPCKEHDVIGTKVCALLDRLAEDYVYLFDEGGDEVIAPRMYCSFS
Q9J3E9/847-939          TRKIKITFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDAVESTLSPCKEHDVIGTKVCALLDRLAGDYVYLFDEGGDEVIAPRMYCSFS
C0KYS8/850-942          TRKIKITFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDAVESTLSPCKEHDVIGTKVCALLDRLAGDYVYLFDEGGDEVIAPRMYCSFS
C0KYT7/850-942          TRKIKITFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDAVESTLSPCKEHDVIGTKVCALLDRLAGDYVYLFDEGGDEVIAPRMYCSFS
C0KYQ8/850-942          TRKIKITFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDAVESTLSPCKEHDVIGTKVCALLDRLAGDYVYLFDEGGDEVIAPRMYCSFS
I7B5F2/850-942          TRKIKIIFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDAVESTLSPCKEHGVIGTKVCALLERVVDDYVYLFDEGGEEVIASRMYCSFS
Q7M006/482-574          TRKIKITFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDAVESTLSPCKEHDVIGTKVCALLDRLAGDYVYLFDEGGDEVIAPRMYCSFS
#=GC scorecons          999999599999999999999999999999999999999999999999999999699999999996976599999999997999967999999
#=GC scorecons_70       ******_***********************************************_**********_**__***************_*******
#=GC scorecons_80       ******_***********************************************_**********_**__**********_****_*******
#=GC scorecons_90       ******_***********************************************_**********_*___**********_****__******
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