# STOCKHOLM 1.0
#=GF ID 3.10.10.10/FF/000005
#=GF DE Endogenous retrovirus group K member 25 Pol protein
#=GF AC 3.10.10.10/FF/000005
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 70.211
#=GS P63128/954-1025_1051-1091  AC P63128
#=GS P63128/954-1025_1051-1091  OS Homo sapiens
#=GS P63128/954-1025_1051-1091  DE Endogenous retrovirus group K member 9 Pol protein
#=GS P63128/954-1025_1051-1091  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS P63128/954-1025_1051-1091  DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; 3.4.23.50; 
#=GS Q9WJR5/31-105_131-171      AC Q9WJR5
#=GS Q9WJR5/31-105_131-171      OS Homo sapiens
#=GS Q9WJR5/31-105_131-171      DE Endogenous retrovirus group K member 19 Pol protein
#=GS Q9WJR5/31-105_131-171      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS Q9WJR5/31-105_131-171      DR EC; 2.7.7.49; 3.1.26.4; 
#=GS P11204/195-277_301-341     AC P11204
#=GS P11204/195-277_301-341     OS Equine infectious anemia virus (CLONE 1369)
#=GS P11204/195-277_301-341     DE Pol polyprotein
#=GS P11204/195-277_301-341     DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus; Equine infectious anemia virus; 
#=GS P11204/195-277_301-341     DR GO; GO:0000287; GO:0002134; GO:0004170; GO:0006226; GO:0046081; 
#=GS P11204/195-277_301-341     DR EC; 2.7.7.49; 3.1.13.2; 3.1.26.13; 
#=GS Q7SQ98/13-87_113-153       AC Q7SQ98
#=GS Q7SQ98/13-87_113-153       OS Avian leukosis virus
#=GS Q7SQ98/13-87_113-153       DE Pol polyprotein
#=GS Q7SQ98/13-87_113-153       DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Avian leukosis virus; 
#=GS Q7SQ98/13-87_113-153       DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; 
#=GS P63136/31-102_128-168      AC P63136
#=GS P63136/31-102_128-168      OS Homo sapiens
#=GS P63136/31-102_128-168      DE Endogenous retrovirus group K member 25 Pol protein
#=GS P63136/31-102_128-168      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS P63136/31-102_128-168      DR EC; 2.7.7.49; 3.1.26.4; 
#=GS Q9BXR3/31-102_128-168      AC Q9BXR3
#=GS Q9BXR3/31-102_128-168      OS Homo sapiens
#=GS Q9BXR3/31-102_128-168      DE Endogenous retrovirus group K member 6 Pol protein
#=GS Q9BXR3/31-102_128-168      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS Q9BXR3/31-102_128-168      DR EC; 2.7.7.49; 3.1.26.4; 
#=GS P63133/32-102_128-168      AC P63133
#=GS P63133/32-102_128-168      OS Homo sapiens
#=GS P63133/32-102_128-168      DE Endogenous retrovirus group K member 8 Pol protein
#=GS P63133/32-102_128-168      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS P63133/32-102_128-168      DR EC; 2.7.7.49; 3.1.26.4; 
#=GS Q9UQG0/31-102_128-168      AC Q9UQG0
#=GS Q9UQG0/31-102_128-168      OS Homo sapiens
#=GS Q9UQG0/31-102_128-168      DE Endogenous retrovirus group K member 11 Pol protein
#=GS Q9UQG0/31-102_128-168      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS Q9UQG0/31-102_128-168      DR EC; 2.7.7.49; 3.1.26.4; 
#=GS P63135/31-102_128-168      AC P63135
#=GS P63135/31-102_128-168      OS Homo sapiens
#=GS P63135/31-102_128-168      DE Endogenous retrovirus group K member 7 Pol protein
#=GS P63135/31-102_128-168      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS P63135/31-102_128-168      DR EC; 2.7.7.49; 3.1.26.4; 
#=GS P63132/31-102_128-168      AC P63132
#=GS P63132/31-102_128-168      OS Homo sapiens
#=GS P63132/31-102_128-168      DE Endogenous retrovirus group K member 113 Pol protein
#=GS P63132/31-102_128-168      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS P63132/31-102_128-168      DR EC; 2.7.7.49; 3.1.26.4; 
#=GS P10266/31-102_128-168      AC P10266
#=GS P10266/31-102_128-168      OS Homo sapiens
#=GS P10266/31-102_128-168      DE Endogenous retrovirus group K member 10 Pol protein
#=GS P10266/31-102_128-168      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS P10266/31-102_128-168      DR EC; 2.7.7.49; 3.1.26.4; 
#=GS Q9QC07/32-102_128-168      AC Q9QC07
#=GS Q9QC07/32-102_128-168      OS Homo sapiens
#=GS Q9QC07/32-102_128-168      DE Endogenous retrovirus group K member 18 Pol protein
#=GS Q9QC07/32-102_128-168      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS Q9QC07/32-102_128-168      DR EC; 2.7.7.49; 3.1.26.4; 
#=GS Q0PKG6/31-102_128-168      AC Q0PKG6
#=GS Q0PKG6/31-102_128-168      OS Homo sapiens
#=GS Q0PKG6/31-102_128-168      DE Reverse transcriptase
#=GS Q0PKG6/31-102_128-168      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS V9H0H3/954-1025_1051-1091  AC V9H0H3
#=GS V9H0H3/954-1025_1051-1091  OS Homo sapiens
#=GS V9H0H3/954-1025_1051-1091  DE Gag-Pro-Pol-Env protein
#=GS V9H0H3/954-1025_1051-1091  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS A0A2S6CPW0/25-105_129-169  AC A0A2S6CPW0
#=GS A0A2S6CPW0/25-105_129-169  OS Cuspidothrix issatschenkoi CHARLIE-1
#=GS A0A2S6CPW0/25-105_129-169  DE Uncharacterized protein
#=GS A0A2S6CPW0/25-105_129-169  DR ORG; Bacteria; Cyanobacteria; Nostocales; Aphanizomenonaceae; Cuspidothrix; Cuspidothrix issatschenkoi; 
#=GS Q69013/8-78_104-144        AC Q69013
#=GS Q69013/8-78_104-144        OS Human endogenous retrovirus
#=GS Q69013/8-78_104-144        DE Polymerase
#=GS Q69013/8-78_104-144        DR ORG; Viruses; Ortervirales; Retroviridae; Human endogenous retrovirus; 
#=GS O92956/721-795_821-861     AC O92956
#=GS O92956/721-795_821-861     OS Rous sarcoma virus - Schmidt-Ruppin B
#=GS O92956/721-795_821-861     DE Gag-Pol polyprotein
#=GS O92956/721-795_821-861     DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; 
#=GS O92956/721-795_821-861     DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; 
#=GS Q04095/721-795_821-861     AC Q04095
#=GS Q04095/721-795_821-861     OS Rous sarcoma virus (strain Schmidt-Ruppin A)
#=GS Q04095/721-795_821-861     DE Gag-Pol polyprotein
#=GS Q04095/721-795_821-861     DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; 
#=GS Q04095/721-795_821-861     DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; 
#=GS P03354/721-795_821-861     AC P03354
#=GS P03354/721-795_821-861     OS Rous sarcoma virus - Prague C
#=GS P03354/721-795_821-861     DE Gag-Pol polyprotein
#=GS P03354/721-795_821-861     DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; 
#=GS P03354/721-795_821-861     DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; 
#=GS P32542/195-277_301-341     AC P32542
#=GS P32542/195-277_301-341     OS Equine infectious anemia virus (clone CL22)
#=GS P32542/195-277_301-341     DE Pol polyprotein
#=GS P32542/195-277_301-341     DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus; Equine infectious anemia virus; 
#=GS P32542/195-277_301-341     DR EC; 2.7.7.49; 3.1.13.2; 3.1.26.13; 
#=GS P03371/195-277_301-341     AC P03371
#=GS P03371/195-277_301-341     OS Equine infectious anemia virus (ISOLATE WYOMING)
#=GS P03371/195-277_301-341     DE Pol polyprotein
#=GS P03371/195-277_301-341     DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus; Equine infectious anemia virus; 
#=GS P03371/195-277_301-341     DR EC; 2.7.7.49; 3.1.13.2; 3.1.26.13; 
#=GS K7WE30/196-278_302-342     AC K7WE30
#=GS K7WE30/196-278_302-342     OS Equine infectious anemia virus
#=GS K7WE30/196-278_302-342     DE Polymerase polyprotein
#=GS K7WE30/196-278_302-342     DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus; Equine infectious anemia virus; 
#=GF SQ 22
P63128/954-1025_1051-1091          -------EKPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPS--FSPWNSPVFVIQKKSGKWRMLTDLR---AVNAVIQPMGPL--FTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNS
Q9WJR5/31-105_131-171              -------EKPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPS--FSPWNSPVFVIQKKSGKWRMLTDLRAVNAVNAVIQPMGPL--FTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNS
P11204/195-277_301-341             KIELKEGTMGPKIPQWPLTKEKLEGAKEIVQRLLSEGKISEASDNNPYNSPIFVIKKRSGKWRLLQDLR---ELNKTVQVGTEISRFTIPLDPEFRPYTAFTIPSINHQEPDKRYVWNCLPQGFVLS
Q7SQ98/13-87_113-153               ----KPDHTPVWIDQWPLPEGKLVALTQLVEKELQLGHIEPS--LSCWNTPVFVIRKASGSYRLLHDLR---AVNAKLVPFGAV--FSIPLAEQDREAFAFTLPSVNNQAPARRFQWKVLPQGMTCS
P63136/31-102_128-168              -------EKPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPS--FSPWNSPVFVIQKKSGKWRMLTDLR---AVNAVIQPMGPL--FTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNS
Q9BXR3/31-102_128-168              -------EKPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPS--FSPWNSPVFVIQKKSGKWRMLTDLR---AVNAVIQPMGPL--FTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNS
P63133/32-102_128-168              --------KLVWVNQWPLPKQKLEALHLLANEQLEKGHIEPS--FSPWNSPVFVIQKKSGKWRMLTDLR---AVNAVIQPMGPL--FTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNS
Q9UQG0/31-102_128-168              -------EKPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPS--FSPWNSPVFVIQKKSGKWRMLTDLR---AVNAVIQPMGPL--FTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNS
P63135/31-102_128-168              -------EKPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPS--FSPWNSPVFVIQKKSGKWRMLTDLR---AVNAVIQPMGPL--FTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNS
P63132/31-102_128-168              -------EKPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPS--FSPWNSPVFVIQKKSGKWRMLTDLR---AVNAVIQPMGPL--FTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNS
P10266/31-102_128-168              -------EKPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPS--FSPWNSPVFVIQKKSGKWHTLTDLR---AVNAVIQPMGPL--FTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNS
Q9QC07/32-102_128-168              --------KLVWVNQWPLPKQKLEALHLLANEQLEKGHIEPS--FSPWNSPVFVIQKKSSKWRMLTDLR---AVNAVIQPMGPL--FTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNS
Q0PKG6/31-102_128-168              -------EKPVWVNQWQLPKQKLEALHLLANEQLEKGHIEPS--FSPWNSPVFVIQKKSGKWRMLTDLR---AVNAVIQPMGPL--FTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNS
V9H0H3/954-1025_1051-1091          -------EKPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPS--FSPWNSPVFVIQKKSGKWRMLTDLR---AVNALIQPMGPL--FTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNS
A0A2S6CPW0/25-105_129-169          --ELKEGTMGPKIPQWPLTKEKLEGAKEIVQRLLSEGKISEASDNNPYNSPIFVIKKRSGKWRLLQDLR---ELNKTVQVGTEISRFTIPLDPEFRPYTAFTIPSINHQEPDKRYVWNCLPQGFVLS
Q69013/8-78_104-144                --------KLVWVNQWPLPKQKLEALHLLANEQLEKGHIEPS--FSPWNFPVFVIQKKSGKWRMLTDLR---AVNAIIQPMGPL--FTIPPAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNS
O92956/721-795_821-861             ----KPDHTPVWIDQWPLPEGKLVALTQLVEKELQLGHIEPS--LSCWNTPVFVIRKASGSYRLLHDLR---AVNAKLVPFGAV--FSIPLAEQDREAFAFTLPSVNNQAPARRFQWKVLPQGMTCS
Q04095/721-795_821-861             ----KPDHTPVWIDQWPLPEGKLVALTQLVEKELQLGHIEPS--LSCWNTPVFVIRKASGSYRLLHDLR---AVNAKLVPFGAV--FSIPLAEQDREAFAFTLPSVNNQAPARRFQWKVLPQGMTCS
P03354/721-795_821-861             ----KPDHTPVWIDQWPLPEGKLVALTQLVEKELQLGHIEPS--LSCWNTPVFVIRKASGSYRLLHDLR---AVNAKLVPFGAV--FSIPLAEQDREAFAFTLPSVNNQAPARRFQWKVLPQGMTCS
P32542/195-277_301-341             KIELKEGTMGPKIPQWPLTKEKLEGAKEIVQRLLSEGKISEASDNNPYNSPIFVIKKRSGKWRLLQDLR---ELNKTVQVGTEISRFTIPLDPEFRPYTAFTIPSINHQEPDKRYVWNCLPQGFVLS
P03371/195-277_301-341             KIELKEGTMGPKIPQWPLTKEKLEGAKETVQRLLSEGKISEASDNNPYNSPIFVIKKRSGKWRLLQDLR---ELNKTVQVGTEISRFTIPLDPEFRPYTAFTIPSINHQEPDKRYVWKCLPQGFVLS
K7WE30/196-278_302-342             KIKLKTGTTGPKIPQWPLTKEKLLGAKEIVQRLLLEGKISEAEDNNPYNSPIFVIKKKSGKWRLLQDLR---ELNKMVELGTEISRFTIPLDPEFRPYTAFTVPSINHQEPDKRYIWNCLPQGFVLS
#=GC scorecons                     0000211344557499896759956544665549449695560046669697999595986686949990005695465536450097998556455359996967966695597596599996539
#=GC scorecons_70                  ____________*_******_**_*________*__***__*___**_*******_*_*******_***____**___________*****__*_____*****_******__**_**_****___*
#=GC scorecons_80                  ______________****___**__________*__*_*_________*_*****_*_**__*_*_***_____*___________*_***________***_*_**___*__**_*__****___*
#=GC scorecons_90                  ______________****___**__________*__*_*_________*_*_***_*_**__*_*_***_____*___________*_***________***_*__*___*__*__*__****___*
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