# STOCKHOLM 1.0
#=GF ID 2.70.20.50/FF/000002
#=GF DE Matrix protein
#=GF AC 2.70.20.50/FF/000002
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 39.853
#=GS 4g1oA01/1-187_357-364 AC P11206
#=GS 4g1oA01/1-187_357-364 OS Newcastle disease virus (STRAIN AUSTRALIA-VICTORIA/32)
#=GS 4g1oA01/1-187_357-364 DE Matrix protein
#=GS 4g1oA01/1-187_357-364 DR CATH; 4g1o; A:13-187; A:357-362; 
#=GS 4g1oA01/1-187_357-364 DR ORG; Viruses; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirus; Avian avulavirus 1; 
#=GS H2DMX1/1-191      AC H2DMX1
#=GS H2DMX1/1-191      OS Avian avulavirus 1
#=GS H2DMX1/1-191      DE Matrix protein
#=GS H2DMX1/1-191      DR ORG; Viruses; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirus; Avian avulavirus 1; 
#=GS H2DMX1/1-191      DR GO; GO:0044196; 
#=GS 4g1lA01/1-187_357-364 AC P11206
#=GS 4g1lA01/1-187_357-364 OS Newcastle disease virus (STRAIN AUSTRALIA-VICTORIA/32)
#=GS 4g1lA01/1-187_357-364 DE Matrix protein
#=GS 4g1lA01/1-187_357-364 DR CATH; 4g1l; A:14-187; A:357-363; 
#=GS 4g1lA01/1-187_357-364 DR ORG; Viruses; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirus; Avian avulavirus 1; 
#=GS 4g1gA01/1-187_357-364 AC P11206
#=GS 4g1gA01/1-187_357-364 OS Newcastle disease virus (STRAIN AUSTRALIA-VICTORIA/32)
#=GS 4g1gA01/1-187_357-364 DE Matrix protein
#=GS 4g1gA01/1-187_357-364 DR CATH; 4g1g; A:15-187; A:357-363; 
#=GS 4g1gA01/1-187_357-364 DR ORG; Viruses; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirus; Avian avulavirus 1; 
#=GS K4MTN4/1-191      AC K4MTN4
#=GS K4MTN4/1-191      OS Avian avulavirus 1
#=GS K4MTN4/1-191      DE M protein
#=GS K4MTN4/1-191      DR ORG; Viruses; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirus; Avian avulavirus 1; 
#=GS K4MTN4/1-191      DR GO; GO:0044196; 
#=GS D7F443/1-191      AC D7F443
#=GS D7F443/1-191      OS Avian avulavirus 1
#=GS D7F443/1-191      DE Matrix protein
#=GS D7F443/1-191      DR ORG; Viruses; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirus; Avian avulavirus 1; 
#=GS D7F443/1-191      DR GO; GO:0044196; 
#=GS D7F419/1-190      AC D7F419
#=GS D7F419/1-190      OS Avian avulavirus 1
#=GS D7F419/1-190      DE Matrix protein
#=GS D7F419/1-190      DR ORG; Viruses; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirus; Avian avulavirus 1; 
#=GS D7F419/1-190      DR GO; GO:0044196; 
#=GS Q9W7T8/1-191      AC Q9W7T8
#=GS Q9W7T8/1-191      OS Avian avulavirus 1
#=GS Q9W7T8/1-191      DE M
#=GS Q9W7T8/1-191      DR ORG; Viruses; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirus; Avian avulavirus 1; 
#=GS Q9W7T8/1-191      DR GO; GO:0044196; 
#=GS Q15EM2/1-191      AC Q15EM2
#=GS Q15EM2/1-191      OS Avian avulavirus 1
#=GS Q15EM2/1-191      DE Matrix protein
#=GS Q15EM2/1-191      DR ORG; Viruses; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirus; Avian avulavirus 1; 
#=GS Q15EM2/1-191      DR GO; GO:0044196; 
#=GS P11206/1-191      AC P11206
#=GS P11206/1-191      OS Newcastle disease virus (STRAIN AUSTRALIA-VICTORIA/32)
#=GS P11206/1-191      DE Matrix protein
#=GS P11206/1-191      DR ORG; Viruses; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirus; Avian avulavirus 1; 
#=GS D0Q1G6/1-191      AC D0Q1G6
#=GS D0Q1G6/1-191      OS Pigeon paramyxovirus 1
#=GS D0Q1G6/1-191      DE Matrix protein
#=GS D0Q1G6/1-191      DR ORG; Viruses; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirus; Avian avulavirus 1; 
#=GS Q9WBL3/1-191      AC Q9WBL3
#=GS Q9WBL3/1-191      OS Avian avulavirus 1
#=GS Q9WBL3/1-191      DE Matrix protein
#=GS Q9WBL3/1-191      DR ORG; Viruses; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirus; Avian avulavirus 1; 
#=GS H6VVT7/1-194      AC H6VVT7
#=GS H6VVT7/1-194      OS Avian avulavirus 1
#=GS H6VVT7/1-194      DE Matrix
#=GS H6VVT7/1-194      DR ORG; Viruses; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirus; Avian avulavirus 1; 
#=GS A0A060AJQ0/1-191  AC A0A060AJQ0
#=GS A0A060AJQ0/1-191  OS Avian avulavirus 1
#=GS A0A060AJQ0/1-191  DE Matrix protein
#=GS A0A060AJQ0/1-191  DR ORG; Viruses; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirus; Avian avulavirus 1; 
#=GS H6VTA3/1-191      AC H6VTA3
#=GS H6VTA3/1-191      OS Avian avulavirus 1
#=GS H6VTA3/1-191      DE Matrix
#=GS H6VTA3/1-191      DR ORG; Viruses; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirus; Avian avulavirus 1; 
#=GS P06157/1-191      AC P06157
#=GS P06157/1-191      OS Newcastle disease virus strain Beaudette C/45
#=GS P06157/1-191      DE Matrix protein
#=GS P06157/1-191      DR ORG; Viruses; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirus; Avian avulavirus 1; 
#=GS Q9DLD5/1-191      AC Q9DLD5
#=GS Q9DLD5/1-191      OS Newcastle disease virus B1/48
#=GS Q9DLD5/1-191      DE Matrix protein
#=GS Q9DLD5/1-191      DR ORG; Viruses; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirus; Avian avulavirus 1; 
#=GS A0A068BFA0/1-191  AC A0A068BFA0
#=GS A0A068BFA0/1-191  OS Avian avulavirus 1
#=GS A0A068BFA0/1-191  DE Matrix protein
#=GS A0A068BFA0/1-191  DR ORG; Viruses; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirus; Avian avulavirus 1; 
#=GS H6USJ9/1-191      AC H6USJ9
#=GS H6USJ9/1-191      OS Avian avulavirus 1
#=GS H6USJ9/1-191      DE Matrix
#=GS H6USJ9/1-191      DR ORG; Viruses; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirus; Avian avulavirus 1; 
#=GS J7ILR1/1-191      AC J7ILR1
#=GS J7ILR1/1-191      OS Avian avulavirus 1
#=GS J7ILR1/1-191      DE Matrix protein
#=GS J7ILR1/1-191      DR ORG; Viruses; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirus; Avian avulavirus 1; 
#=GF SQ 20
4g1oA01/1-187_357-364     MDSSRTIGLYFDSALPSSNLLAFPIVLQDIGDGKKQIAPQYRIQRLDSWTDSKEDSVFITTYGFIFQVGNEEVTVGMISDNPKHELLSAAMLCLGSVPNVGDLVELARACLTMVVTCKKSATDTERMVFSVVQAPQVLQSCRVVANKYSSVNAVKHVKAPEKIPGSGTLEYKVNFVSLTVVPRKDVYAKYNPFKK
H2DMX1/1-191              MDSSRTIGLYFDSALPSSSLLAFPIILQDTGDGKKQITPQYRIQRLDSWTDSKEDSVFITTYGFIFQVGNEEATVGVINDNPRHELLSSAMLCLGSVPNNGDLVELARACLTMVVTCKKSATNTERIVFSVVQAPRVLQNCMVVSNRYSSVNAVKHVKAPEMIPGSGALEYEVIFVSLTVVPRRDVYRIPT----
4g1lA01/1-187_357-364     MDSSRTIGLYFDSALPSSNLLAFPIVLQDIGDGKKQIAPQYRIQRLDSWTDSKEDSVFITTYGFIFQVGNEEVTVGMISDNPKHELLSAAMLCLGSVPNVGDLVELARACLTMVVTCKKSATDTERMVFSVVQAPQVLQSCRVVANKYSSVNAVKHVKAPEKIPGSGTLEYKVNFVSLTVVPRKDVYAKYNPFKK
4g1gA01/1-187_357-364     MDSSRTIGLYFDSALPSSNLLAFPIVLQDIGDGKKQIAPQYRIQRLDSWTDSKEDSVFITTYGFIFQVGNEEVTVGMISDNPKHELLSAAMLCLGSVPNVGDLVELARACLTMVVTCKKSATDTERMVFSVVQAPQVLQSCRVVANKYSSVNAVKHVKAPEKIPGSGTLEYKVNFVSLTVVPRKDVYAKYNPFKK
K4MTN4/1-191              MDSSRTIGLYFDSTLPSSNLLAFPIVLQDTGDGKKQIAPQYRIQRLDSWTDSKEDSVFITTYGFIFQVGNEEATVGMINDNPKRELLSTAMLCLGSVPNVGDLVELARACLTMVVTCKKSATNTERMVFSVVQAPQVLQSCRVVANKYSSVNAVKHVKAPEKIPGSGTLEYKVNFVSLTVVPRKDVYKIPT----
D7F443/1-191              MDSSRTIRLYFDSALPSSSLLAFPIVLQGTGDGKKRITPQYRIQRLDLWTDSKEDSVFITTYGFIFQIGNEEVTVGTISDNPRHELLSSAMLCLGSVPNDGDLVELARACLTMVITCKKSATNTERIVFSIVQAPRVLQSCMVVANKYSSVNAVKHVKAPEKIPGSGTLEYKVNFVSLTVVPRKDVYRIPT----
D7F419/1-190              MDSSRTIRLYFDSALPSSSLLAFPIVLQGTGDGKKRITPQYRIQRLDSWTDSKEDSVFITTYGFIFQIGNEEVNVGTINDNPRHELLSSAMLCLGSVPNDGDLVELARACLTMVITCKKSATNTERIVFSVVQAPRVLQSCMVVANKYSSVNAVKHVKAPKKIPGSGTLEYKVNFVSLTVVPRKDVYRIP-----
Q9W7T8/1-191              MDSSRTIGLYFDSAHSSSNLLAFPIVLQDTGDGKKQIAPQYRIQRLDLWTDSKEDSVFITTYGFIFQVGNEEATVGMIDDKPKRELLSAAMLCLGSVPNTGDLIELARACLTMIVTCKKSATNTERMVFSVVQAPQVLQSCRVVANKYSSVNAVKHVKAPEKIPGSGTLEYKVNFVSLTVVPKKDVYKIPA----
Q15EM2/1-191              MDSSRTIGLYFDSALPSSNLLAFPIVLRDVGDGKKQITPQYRIRRLDSWTDSKEDSVFITTYGFIFQVGNEEVTVGMINDNPKRELLSAAMLCLGSVPNVGDPVELARACLTMVVTCKKSATNTERMVFSVVQAPRVLQSCRVVADKYSSVNAVKHVKAPEKIPGSETLEYKVNFVSLTVVPKKDVYKIPT----
P11206/1-191              MDSSRTIGLYFDSALPSSNLLAFPIVLQDIGDGKKQIAPQYRIQRLDSWTDSKEDSVFITTYGFIFQVGNEEVTVGMISDNPKHELLSAAMLCLGSVPNVGDLVELARACLTMVVTCKKSATDTERMVFSVVQAPQVLQSCRVVANKYSSVNAVKHVKAPEKIPGSGTLEYKVNFVSLTVVPRKDVYKIPT----
D0Q1G6/1-191              MDSSRTIGLYFDSALPSSSLLAFPIVLQDTGNGKKRITPQYRIQRLDSWTDSKEDSVFITTYGFIFQIGNDEVTVGTINDNPRHELLSSAMLCLGSVPNDGDLVELAKACLTMAVTCKKSATNTERIVFSVVQAPRVLQSCMVVANRYSSVNAVKHVKAPEKIPGSGTLEYKVNFVSLTVVPKKDVYRIPT----
Q9WBL3/1-191              MDSSRAIGLYFDSALPSSSLLAFPIVLQDTGDGKKQITPQYRIQRLDSWTDSKEDSVFITTYGFIFQVGNEEVTVGMINDNPGHELLSSAMLCLGSVPNDGDLVELARACLTMVVTCKKSATNTERIVFSVVQAPRVLQSCMVVANRYSSVNAVNHVKAPEKIPGSGTLEYKVNFVSLTVVPRKDVYRIPT----
H6VVT7/1-194              MDSSRTIGLYFDSALPSSSLLAFPIVLQTTGDGRKQITPQYRIQRLDSWTDSKEDSVFITTYGFIFQVGNEEVIVGTINDNPRQELLSSAMLCLGSVPNDGDLVELARACLTMVITCKKSATNTERIVFSIVQAPRVLQSCMVVANKYSSVNAVKHVKAPEKIPGSGTLEYKVNFVSLTVVPRKDVYRIPTAAL-
A0A060AJQ0/1-191          MDSSRTIGLYFDSALPSSSLLAFPIILQDTGDGKKQITPQYRIQRLDSWTDSKEDSVFITTYGFIFQVGNEEATVGVINDNPRHELLSSAMLCLGSVPNNGDLVELARACLTMVVTCKKSATNTERIVFSVVQATRVLQSCMVVSNRYSSVNAVKHVKAPEKIPGSGTLEYKVNFVSLTVVPRRDVYRIPT----
H6VTA3/1-191              MDSSRTIGLYFDSAHSSSNLLAFPIVLQDTGDGKKQIAPQYRIQRLDSWTDSKEDSVFITTYGFIFQVGNEEATVGMINDNPKRELLSAAMLCLGSVPNTGDLVELARACLTMVVTCKKSATNTERMVFSVVQAPQVLQSCRVVANKYSSVNAVKHVKAPEKIPGSGTLEYKVNFVSLTVVPKKDVYKIPT----
P06157/1-191              MDSSRTIGLYFDSAHSSSNLLAFPIVLQDTGDGKKQIAPQYRIQRLDSWTDSKEDSVFITTYGFIFQVGNEEATVGMINDNPKRELLSAAMLCLGSVPNTGDLVELARACLTMVVTCKKSATNTERMVFSVVQAPQVLQSCRVVANKYSSVNAVKHVKAPEKIPGSGTLEYKVNFVSLTVVPKKDVYKIPT----
Q9DLD5/1-191              MDSSRTIGLYFDSAHSSSNLLAFPIVLQDTGDGKKQIAPQYRIQRLDLWTDSKEDSVFITTYGFIFQVGNEEATVGIIDDKPKRELLSAAMLCLGSVPNTGDLIELARACLTMMVTCKKSATNTERMVFSVVQAPQVLQSCRVVANKYSSVNAVKHVKAPEKIPGSGTLEYKVNFVSLTVVPKKDVYKIPA----
A0A068BFA0/1-191          MDSSRTIGLYFDSALPSSSLLAFPIVIQDTGDGKKQIAPQYRIQRLDSWTDSREDSVFITTYGFIFQVGSEETSVGMINDNPRREMLSAAMLCLGSVPNTGDLVELARACLAMVVTCKKSATNTERMVFSVVQAPQVLQSCRVVANKYSSVNAVKHVKAPEKIPGSGTLEYKINFVSLTVVPRKDVYKIPT----
H6USJ9/1-191              MDSSRTIGLYFDSALPSSSLLAFPIILQDTGDGKRQIAPQYRIQRLDSWTDSKEDSVFITTYGFIFQVGSEETSVGMINDSPRREMLSAAMLCLGSVPNTGDLVDLARACLAMVVTCKKSATNTERMVFSVAQAPQVLQSCRVVANKYSSVNAVKHVRAPEKIPGSGTLEYKINFVSLTVVPRKDVYKIPT----
J7ILR1/1-191              MDSSRTIGLYFDSAHSSSNLLAFPIVLQDTGDGKKQIAPQYRIQRLDLWTDSKEDSVFITTYGFIFQVGNEEATVGMIDDKPKRELLSAAMLCLGSVPNTGDLIEQARACLTMIVTCKKSATNTERMVFSVVQAPQVLQSCRVVANKYSSVNAVKHVKAPEKIPGSGTLEYKVNFVSLTVVPKKDVYKIPA----
#=GC scorecons            999998979999986799699999978876989887969999989996999989999999999999979789569959597966989969999999999499888898999897799999997999699988998699989599787999999989989988999988999888999999997899956650000
#=GC scorecons_70         ******************_*****************************************************_***_*_****_****_**********_*****************************************_*********************************************_**_____
#=GC scorecons_80         **************__**_*********__*******_*********_************************__**_*_*_*__****_**********_**************************_********_*****_*********************************************________
#=GC scorecons_90         *******_******__**_******_**__*****_*_*********_*******************_*_**__**_*_*_*__****_**********_***_*******_*__*******_***_********_*****_**_*_***********************************_****________
//