# STOCKHOLM 1.0 #=GF ID 2.60.98.10/FF/000006 #=GF DE Genome polyprotein #=GF AC 2.60.98.10/FF/000006 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 26.559 #=GS Q01299/283-331_415-471_558-577 AC Q01299 #=GS Q01299/283-331_415-471_558-577 OS Tick-borne encephalitis virus (strain HYPR) #=GS Q01299/283-331_415-471_558-577 DE Genome polyprotein #=GS Q01299/283-331_415-471_558-577 DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; #=GS Q01299/283-331_415-471_558-577 DR GO; GO:0039502; GO:0039563; #=GS Q01299/283-331_415-471_558-577 DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; #=GS G4XII4/283-331_415-470_552-577 AC G4XII4 #=GS G4XII4/283-331_415-470_552-577 OS Tick-borne encephalitis virus #=GS G4XII4/283-331_415-470_552-577 DE Genome polyprotein #=GS G4XII4/283-331_415-470_552-577 DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; #=GS G4XII4/283-331_415-470_552-577 DR GO; GO:0019079; #=GS Q7T6D2/283-331_415-471_558-577 AC Q7T6D2 #=GS Q7T6D2/283-331_415-471_558-577 OS Omsk hemorrhagic fever virus #=GS Q7T6D2/283-331_415-471_558-577 DE Genome polyprotein #=GS Q7T6D2/283-331_415-471_558-577 DR ORG; Viruses; Flaviviridae; Flavivirus; Omsk hemorrhagic fever virus; #=GS Q7T6D2/283-331_415-471_558-577 DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; #=GS P22338/283-331_415-471_558-577 AC P22338 #=GS P22338/283-331_415-471_558-577 OS Louping ill virus #=GS P22338/283-331_415-471_558-577 DE Genome polyprotein #=GS P22338/283-331_415-471_558-577 DR ORG; Viruses; Flaviviridae; Flavivirus; Louping ill virus; #=GS P22338/283-331_415-471_558-577 DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; #=GS P29837/283-331_415-471_558-577 AC P29837 #=GS P29837/283-331_415-471_558-577 OS Langat virus (strain TP21) #=GS P29837/283-331_415-471_558-577 DE Genome polyprotein #=GS P29837/283-331_415-471_558-577 DR ORG; Viruses; Flaviviridae; Flavivirus; Langat virus; #=GS P29837/283-331_415-471_558-577 DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; #=GS C3V005/286-334_418-474_561-580 AC C3V005 #=GS C3V005/286-334_418-474_561-580 OS Chimeric Tick-borne encephalitis virus/Dengue virus 4 #=GS C3V005/286-334_418-474_561-580 DE Genome polyprotein #=GS C3V005/286-334_418-474_561-580 DR ORG; Viruses; Flaviviridae; Flavivirus; Chimeric Tick-borne encephalitis virus/Dengue virus 4; #=GS P14336/283-331_415-471_558-577 AC P14336 #=GS P14336/283-331_415-471_558-577 OS Tick-borne encephalitis virus (WESTERN SUBTYPE) #=GS P14336/283-331_415-471_558-577 DE Genome polyprotein #=GS P14336/283-331_415-471_558-577 DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; #=GS P14336/283-331_415-471_558-577 DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; #=GS P07720/283-331_415-471_558-577 AC P07720 #=GS P07720/283-331_415-471_558-577 OS Tick-borne encephalitis virus (STRAIN SOFJIN) #=GS P07720/283-331_415-471_558-577 DE Genome polyprotein #=GS P07720/283-331_415-471_558-577 DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; #=GS P07720/283-331_415-471_558-577 DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; #=GS P35766/3-51_135-191_278-297 AC P35766 #=GS P35766/3-51_135-191_278-297 OS Louping ill virus (strain Norway) #=GS P35766/3-51_135-191_278-297 DE Genome polyprotein #=GS P35766/3-51_135-191_278-297 DR ORG; Viruses; Flaviviridae; Flavivirus; Louping ill virus; #=GS P35764/3-51_135-191_278-297 AC P35764 #=GS P35764/3-51_135-191_278-297 OS Louping ill virus (strain 31) #=GS P35764/3-51_135-191_278-297 DE Genome polyprotein #=GS P35764/3-51_135-191_278-297 DR ORG; Viruses; Flaviviridae; Flavivirus; Louping ill virus; #=GS Q02478/3-51_135-191_278-297 AC Q02478 #=GS Q02478/3-51_135-191_278-297 OS Louping ill virus (strain Negishi 3248/49/P10) #=GS Q02478/3-51_135-191_278-297 DE Genome polyprotein #=GS Q02478/3-51_135-191_278-297 DR ORG; Viruses; Flaviviridae; Flavivirus; Louping ill virus; #=GS P35765/3-51_135-191_278-297 AC P35765 #=GS P35765/3-51_135-191_278-297 OS Louping ill virus (strain K) #=GS P35765/3-51_135-191_278-297 DE Genome polyprotein #=GS P35765/3-51_135-191_278-297 DR ORG; Viruses; Flaviviridae; Flavivirus; Louping ill virus; #=GS Q02012/3-51_135-191_278-297 AC Q02012 #=GS Q02012/3-51_135-191_278-297 OS Louping ill virus (strain SB 526) #=GS Q02012/3-51_135-191_278-297 DE Genome polyprotein #=GS Q02012/3-51_135-191_278-297 DR ORG; Viruses; Flaviviridae; Flavivirus; Louping ill virus; #=GS O40970/3-51_135-191_278-297 AC O40970 #=GS O40970/3-51_135-191_278-297 OS Louping ill virus #=GS O40970/3-51_135-191_278-297 DE Envelope #=GS O40970/3-51_135-191_278-297 DR ORG; Viruses; Flaviviridae; Flavivirus; Louping ill virus; #=GS Q88489/283-331_415-471_558-577 AC Q88489 #=GS Q88489/283-331_415-471_558-577 OS Tick-borne encephalitis virus #=GS Q88489/283-331_415-471_558-577 DE Genome polyprotein #=GS Q88489/283-331_415-471_558-577 DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; #=GS Q80E47/198-246_330-386_473-492 AC Q80E47 #=GS Q80E47/198-246_330-386_473-492 OS Tick-borne encephalitis virus #=GS Q80E47/198-246_330-386_473-492 DE Polyprotein #=GS Q80E47/198-246_330-386_473-492 DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; #=GS B5ATG5/283-331_415-471_558-577 AC B5ATG5 #=GS B5ATG5/283-331_415-471_558-577 OS Tick-borne encephalitis virus #=GS B5ATG5/283-331_415-471_558-577 DE Polyprotein #=GS B5ATG5/283-331_415-471_558-577 DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; #=GS Q0MUU1/3-51_135-191_278-297 AC Q0MUU1 #=GS Q0MUU1/3-51_135-191_278-297 OS Langat virus #=GS Q0MUU1/3-51_135-191_278-297 DE Envelope protein #=GS Q0MUU1/3-51_135-191_278-297 DR ORG; Viruses; Flaviviridae; Flavivirus; Langat virus; #=GS A0A218KFE7/283-331_415-471_558-577 AC A0A218KFE7 #=GS A0A218KFE7/283-331_415-471_558-577 OS Tick-borne encephalitis virus #=GS A0A218KFE7/283-331_415-471_558-577 DE Genome polyprotein #=GS A0A218KFE7/283-331_415-471_558-577 DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; #=GS P29838/283-331_415-471_558-577 AC P29838 #=GS P29838/283-331_415-471_558-577 OS Langat virus (strain Yelantsev) #=GS P29838/283-331_415-471_558-577 DE Genome polyprotein #=GS P29838/283-331_415-471_558-577 DR ORG; Viruses; Flaviviridae; Flavivirus; Langat virus; #=GS D1FNM3/283-331_415-471_558-577 AC D1FNM3 #=GS D1FNM3/283-331_415-471_558-577 OS Tick-borne encephalitis virus #=GS D1FNM3/283-331_415-471_558-577 DE Polyprotein #=GS D1FNM3/283-331_415-471_558-577 DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; #=GS Q99354/283-331_415-471_558-576 AC Q99354 #=GS Q99354/283-331_415-471_558-576 OS Tick-borne encephalitis virus #=GS Q99354/283-331_415-471_558-576 DE Structural protein gene, 5' end #=GS Q99354/283-331_415-471_558-576 DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; #=GS I1VEB1/283-331_415-471_558-577 AC I1VEB1 #=GS I1VEB1/283-331_415-471_558-577 OS Tick-borne encephalitis virus #=GS I1VEB1/283-331_415-471_558-577 DE Genome polyprotein #=GS I1VEB1/283-331_415-471_558-577 DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; #=GF SQ 23 Q01299/283-331_415-471_558-577 CTHLENRDFVTGTQGTTRVTLVLELGGCVTITAEGKPSMDVWLDAIYQENKIVYTVKVEPHTGDYVAANETHSGRKTASFTVSSEKTILTMGEYGDVSLLCRVAS-----GGTKYHLKSGHVTCEVGLEKL G4XII4/283-331_415-470_552-577 CTHLENRDFVTGTQGTTRVTLVLELGGCVTITAEGKPSMDVWLDSIYQENKIVYTVKVEPHTGDYVAVNETHSGRKTASFTVSSEKTILTMGDYGDVSLLCRVASPVAHIDGTKYHLKSGHVTCEVGLEKL Q7T6D2/283-331_415-471_558-577 CTHLENRDFVTGTQGTTRVTLVLELGGCVTITAEGKPSMDVWLDSIYQENKIVYTVKVEPHTGNYVAANETHSGRKTALFTVSSEKTILTMGEYGDVSLMCRVAS-----GGTKYHLKSGHVTCEVGLEKL P22338/283-331_415-471_558-577 CTHLENRDFVTGTQGTTRVTLVLELGGCVTITAEGKPSMDVWLDAIYQENKIVYTVKVEPHTGDYVAANETHKGRKTATFTVSSEKTILTLGEYGDVSLLCRVAS-----GGNKYHLKSGHVTCEVGLEKL P29837/283-331_415-471_558-577 CTHLENRDFVTGVQGTTRLTLVLELGGCVTVTADGKPSLDVWLDSIYQENKITYTIKVEPHTGEFVAANETHSGRKSASFTVSSEKTILTLGDYGDVSLLCRVAS-----GGTKYHLKSGHVTCEVGLEKL C3V005/286-334_418-474_561-580 CTHLENRDFVTGTQGTTRVTLVLELGGCVTITAEGKPSMDVWLDSIYQENKIVYTVKVEPHTGDYVAANETHSGRKTASFTVSSERTILTMGDYGDVSLLCRVAS-----GGTKYHLKSGHVTCEVGLEKL P14336/283-331_415-471_558-577 CTHLENRDFVTGTQGTTRVTLVLELGGCVTITAEGKPSMDVWLDAIYQENKIVYTVKVEPHTGDYVAANETHSGRKTASFTISSEKTILTMGEYGDVSLLCRVAS-----GGTKYHLKSGHVTCEVGLEKL P07720/283-331_415-471_558-577 CTHLENRDFVTGTQGTTRVTLVLELGGCVTITAEGKPSMDVWLDSIYQENKIVYTVKVEPHTGDYVAANETHSGRKTASFTVSSERTILTMGDYGDVSLLCRVAS-----GGTKYHLKSGHVTCEVGLEKL P35766/3-51_135-191_278-297 CTHLENRDFVTGTQGTTRVTLVLELGGCVTITAEGKPSMDVWLDAIYQENKIVYTVKVEPHTGDYVAANETHKGRKTATFTVSSEKTILTLGEYGDVSLLCRVAS-----GGNKYHLKSGHVTCEVGLEKL P35764/3-51_135-191_278-297 CTHLENRDFVTGTQGTTRVTLVLELGGCVTITAEGKPSVDVWLDAIYQENKIVYTVKVEPHTGDYVAANETHKGRKTATFTVSSEKTILTLGEYGDVSLLCRVAS-----GGNKYHLKSGHVTCEVGLEKL Q02478/3-51_135-191_278-297 CTHLENRDFVTGTQGTTRVTLVLELGGCVTITAEGKPSVDVWLDAIYQENKIVYTVKVEPHTGDYVAANETHKGRKTTTFTVSSEKTILTLGEYGDVSLLCRVAS-----GGNKYHLKSGHVTCEVGLENL P35765/3-51_135-191_278-297 CTHLENRDFVTGTQGTTRVTLVLELGGCVTITAEGKPSMDVWLDAIYQENKIVYTVKVEPHTGDYVAANETHKGRKTATFTVSSEKTILTLGEYGDVSLLCRVAS-----GGNKYHLKSGHVTCEVGLEKL Q02012/3-51_135-191_278-297 CTHLENRDFVTGTQGTTRVTLVLELGGCVTITAEGKPSVDVWLDAIYQENKIVYTVKVEPHTGDYVAANETHKGRKTATFTVSSEKTILTLGEYGDVSLLCRVAS-----GGNKYHLKSGHVTCEVGLEKL O40970/3-51_135-191_278-297 CTHLENRDFVTGTQGTTRVTLVLELGGCVTITAEGKPSMDVWLDAIYQGNKIVYTVKVEPHTGDYVAANETHKGRKTATFTVSSEKTILTLGEYGDVSLLCRVAS-----GGNKYHLKSGHVTCEVGLEKL Q88489/283-331_415-471_558-577 CTHLENRDFVTGTQGTTRVTLVLELGGCVTITAEGKPSMDVWLDAIYQENKIVYTVKVEPHTGDYVAANETHSGRKTASFTVSSEKTILTMGEYGDVSLLCRVAS-----GGTKYHLKSGHVTCEVGLEKL Q80E47/198-246_330-386_473-492 CTHLENRDFVTGTQGTTRVTLVLELGGCVTITAEGKPSMDVWLDAIYQENKIVYTVKVEPHTGDYVAANETHSGRKTASFTVSSEKTILTMGEYGDVSLLCRVAS-----GGTKYHLKSGHVTCEVGLEKL B5ATG5/283-331_415-471_558-577 CTHLENRDFVTGTQGTTRVTLVLELGGCVTITAEGKPSMDVWLDAIYQENKIVYTVKVEPHTGDYVAANETHSGRKTASFTVSSEKTILTMGEYGDVSLLCRVAS-----GGTKYHLKSGHVTCEVGLEKL Q0MUU1/3-51_135-191_278-297 CTHLENRDFVTGVQGTTRLTLVLELGGCVTVTADGKPSLDVWLDSIYQENKITYTIKVEPHTGEFVAANETHSGRKSASFTVSSEKTILTLGDYGDVSLLCRVAS-----GGTKYHLKSGHVTCEVGLEKL A0A218KFE7/283-331_415-471_558-577 CTHLENRDFVTGTQGTTRVTLVLELGGCVTITAEGKPSMDVWLDSIYQENKIVYTVKVEPHTGDYVAANETHSGRKTASFTVSSEKTILTMGDYGDVSLLCRVAS-----GGTKYHLKSGHVTCEVGLEKL P29838/283-331_415-471_558-577 CTHLENRDFVTGVQGTTRLTLVLELGGCVTVTADGKPSLDVWLDSIYQENKITYTIKVEPHTGEFVAANETHSGRKSASFTVSSEKTILTLGDYGDVSLLCRVAS-----GGTKYHLKSGHVTCEVGLEKL D1FNM3/283-331_415-471_558-577 CTHLENRDFVTGTQGTTRVTLVLELGGCVTITAEGKPSMDVWLDSIYQENKIVYTVKVEPHTGDYVAANETHSGRKTASFTVSSEKTILNMGDYGDVSLLCRVAS-----GGTKYHLKSGHVTCEVGLEKL Q99354/283-331_415-471_558-576 CTHLENRDFVTGTQGTTRVTLVLELGGCVTITAEGKPSMDVWLDSIYQENKIVYTVKVEPHTGDYVAANETHSGRKTASFTVSSERTILTMGDYGDVSLLCRVAS-----GGTKYHLKSGHVTCEVGLEK- I1VEB1/283-331_415-471_558-577 CTHLENRDFVTGTQGTTRVTLVLELGGCVTITAEGKPSMDVWLDSIYQENKIVYTVKVEPHTGDYVAANETHSGRKTASFTVSSEKTILTMGDYGDVSLLCRVAS-----GGTKYYLKSGHVTCEVGLEKL #=GC scorecons 99999999999969999979999999999979979999699999699989996997999999977998999969997869989998999869799999989999900000896998999999999999988 #=GC scorecons_70 ********************************************_***************************_*****_**************************_____********************* #=GC scorecons_80 ************_*************************_*****_*******_*******************_***_*_***********_*_************_____**_****************** #=GC scorecons_90 ************_*****_***********_**_****_*****_*******_**_*******__**_****_***_*_***********_*_************______*_****************** //