# STOCKHOLM 1.0 #=GF ID 2.60.98.10/FF/000004 #=GF DE Structural polyprotein #=GF AC 2.60.98.10/FF/000004 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 77.827 #=GS P03315/931-994 AC P03315 #=GS P03315/931-994 OS Semliki Forest virus #=GS P03315/931-994 DE Structural polyprotein #=GS P03315/931-994 DR ORG; Viruses; Togaviridae; Alphavirus; Semliki Forest virus; #=GS P03315/931-994 DR GO; GO:0019068; GO:0044174; #=GS P03315/931-994 DR EC; 3.4.21.90; #=GS Q66579/906-985 AC Q66579 #=GS Q66579/906-985 OS Eastern equine encephalitis virus #=GS Q66579/906-985 DE Togavirin #=GS Q66579/906-985 DR ORG; Viruses; Togaviridae; Alphavirus; Eastern equine encephalitis virus; #=GS Q66579/906-985 DR GO; GO:0039501; GO:0039653; #=GS Q1H8W5/924-988 AC Q1H8W5 #=GS Q1H8W5/924-988 OS Chikungunya virus #=GS Q1H8W5/924-988 DE Togavirin #=GS Q1H8W5/924-988 DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; #=GS Q1H8W5/924-988 DR GO; GO:0042802; #=GS Q5WQY5/924-988 AC Q5WQY5 #=GS Q5WQY5/924-988 OS Chikungunya virus strain Nagpur #=GS Q5WQY5/924-988 DE Structural polyprotein #=GS Q5WQY5/924-988 DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; #=GS Q5WQY5/924-988 DR EC; 3.4.21.90; #=GS P05674/927-992 AC P05674 #=GS P05674/927-992 OS Venezuelan equine encephalitis virus (strain TC-83) #=GS P05674/927-992 DE Structural polyprotein #=GS P05674/927-992 DR ORG; Viruses; Togaviridae; Alphavirus; Venezuelan equine encephalitis virus; #=GS P05674/927-992 DR EC; 3.4.21.90; #=GS Q77VY8/927-992 AC Q77VY8 #=GS Q77VY8/927-992 OS Everglades virus #=GS Q77VY8/927-992 DE Togavirin #=GS Q77VY8/927-992 DR ORG; Viruses; Togaviridae; Alphavirus; Everglades virus; #=GS Q77VY8/927-992 DR EC; 3.4.21.90; #=GS Q5XXP3/924-988 AC Q5XXP3 #=GS Q5XXP3/924-988 OS Chikungunya virus strain Senegal 37997 #=GS Q5XXP3/924-988 DE Structural polyprotein #=GS Q5XXP3/924-988 DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; #=GS Q5XXP3/924-988 DR EC; 3.4.21.90; #=GS D7R998/924-988 AC D7R998 #=GS D7R998/924-988 OS Chikungunya virus #=GS D7R998/924-988 DE Togavirin #=GS D7R998/924-988 DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; #=GS D7R998/924-988 DR EC; 3.4.21.90; #=GS Q8JUX5/924-988 AC Q8JUX5 #=GS Q8JUX5/924-988 OS Chikungunya virus strain S27-African prototype #=GS Q8JUX5/924-988 DE Structural polyprotein #=GS Q8JUX5/924-988 DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; #=GS Q8JUX5/924-988 DR EC; 3.4.21.90; #=GS P09592/927-992 AC P09592 #=GS P09592/927-992 OS Venezuelan equine encephalitis virus (strain Trinidad donkey) #=GS P09592/927-992 DE Structural polyprotein #=GS P09592/927-992 DR ORG; Viruses; Togaviridae; Alphavirus; Venezuelan equine encephalitis virus; #=GS P09592/927-992 DR EC; 3.4.21.90; #=GS P36330/927-992 AC P36330 #=GS P36330/927-992 OS Venezuelan equine encephalitis virus (strain Everglades FE3-7C) #=GS P36330/927-992 DE Structural polyprotein #=GS P36330/927-992 DR ORG; Viruses; Togaviridae; Alphavirus; Venezuelan equine encephalitis virus; #=GS P36330/927-992 DR EC; 3.4.21.90; #=GS P36329/928-993 AC P36329 #=GS P36329/928-993 OS Venezuelan equine encephalitis virus (strain 3880) #=GS P36329/928-993 DE Structural polyprotein #=GS P36329/928-993 DR ORG; Viruses; Togaviridae; Alphavirus; Venezuelan equine encephalitis virus; #=GS P36329/928-993 DR EC; 3.4.21.90; #=GS M1KAM9/928-993 AC M1KAM9 #=GS M1KAM9/928-993 OS Venezuelan equine encephalitis virus #=GS M1KAM9/928-993 DE Togavirin #=GS M1KAM9/928-993 DR ORG; Viruses; Togaviridae; Alphavirus; Venezuelan equine encephalitis virus; #=GS M1KAM9/928-993 DR EC; 3.4.21.90; #=GS P36332/928-993 AC P36332 #=GS P36332/928-993 OS Venezuelan equine encephalitis virus (strain P676) #=GS P36332/928-993 DE Structural polyprotein #=GS P36332/928-993 DR ORG; Viruses; Togaviridae; Alphavirus; Venezuelan equine encephalitis virus; #=GS P36332/928-993 DR EC; 3.4.21.90; #=GS Q52QV9/928-993 AC Q52QV9 #=GS Q52QV9/928-993 OS Venezuelan equine encephalitis virus (strain P676) #=GS Q52QV9/928-993 DE Togavirin #=GS Q52QV9/928-993 DR ORG; Viruses; Togaviridae; Alphavirus; Venezuelan equine encephalitis virus; #=GS Q52QV9/928-993 DR EC; 3.4.21.90; #=GS A0A0H4CWF2/924-988 AC A0A0H4CWF2 #=GS A0A0H4CWF2/924-988 OS Chikungunya virus #=GS A0A0H4CWF2/924-988 DE Togavirin #=GS A0A0H4CWF2/924-988 DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; #=GS H6UZ12/48-112 AC H6UZ12 #=GS H6UZ12/48-112 OS Chikungunya virus #=GS H6UZ12/48-112 DE Envelope glycoprotein 1 #=GS H6UZ12/48-112 DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; #=GS H6UZ13/48-112 AC H6UZ13 #=GS H6UZ13/48-112 OS Chikungunya virus #=GS H6UZ13/48-112 DE Envelope glycoprotein 1 #=GS H6UZ13/48-112 DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; #=GS H6UZ11/48-112 AC H6UZ11 #=GS H6UZ11/48-112 OS Chikungunya virus #=GS H6UZ11/48-112 DE Envelope glycoprotein 1 #=GS H6UZ11/48-112 DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; #=GS A5H446/39-103 AC A5H446 #=GS A5H446/39-103 OS Chikungunya virus #=GS A5H446/39-103 DE Structural protein E1 #=GS A5H446/39-103 DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; #=GS B4XW93/43-107 AC B4XW93 #=GS B4XW93/43-107 OS Chikungunya virus #=GS B4XW93/43-107 DE Envelope glycoprotein 1 #=GS B4XW93/43-107 DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; #=GS A0A173M1M2/31-95 AC A0A173M1M2 #=GS A0A173M1M2/31-95 OS Chikungunya virus #=GS A0A173M1M2/31-95 DE E1 protein #=GS A0A173M1M2/31-95 DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; #=GS A5JQJ2/24-91 AC A5JQJ2 #=GS A5JQJ2/24-91 OS Chikungunya virus #=GS A5JQJ2/24-91 DE Envelope protein #=GS A5JQJ2/24-91 DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; #=GS A0A172QZZ7/20-84 AC A0A172QZZ7 #=GS A0A172QZZ7/20-84 OS Chikungunya virus #=GS A0A172QZZ7/20-84 DE Envelope protein #=GS A0A172QZZ7/20-84 DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; #=GS F8SPE9/39-106 AC F8SPE9 #=GS F8SPE9/39-106 OS Chikungunya virus #=GS F8SPE9/39-106 DE Envelope glycoprotein 1 #=GS F8SPE9/39-106 DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; #=GS D0QXC5/33-99 AC D0QXC5 #=GS D0QXC5/33-99 OS Chikungunya virus #=GS D0QXC5/33-99 DE Envelope glycoprotein 1 #=GS D0QXC5/33-99 DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; #=GS E5KW31/15-80 AC E5KW31 #=GS E5KW31/15-80 OS Chikungunya virus #=GS E5KW31/15-80 DE Truncated E1 #=GS E5KW31/15-80 DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; #=GS A0A292Q9W8/599-663 AC A0A292Q9W8 #=GS A0A292Q9W8/599-663 OS Chikungunya virus #=GS A0A292Q9W8/599-663 DE Glycoproteins #=GS A0A292Q9W8/599-663 DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; #=GS A0A292QAP5/599-663 AC A0A292QAP5 #=GS A0A292QAP5/599-663 OS Chikungunya virus #=GS A0A292QAP5/599-663 DE Glycoproteins #=GS A0A292QAP5/599-663 DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; #=GS A0A292QBW8/599-663 AC A0A292QBW8 #=GS A0A292QBW8/599-663 OS Chikungunya virus #=GS A0A292QBW8/599-663 DE Glycoproteins #=GS A0A292QBW8/599-663 DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; #=GS D8UUZ9/115-179 AC D8UUZ9 #=GS D8UUZ9/115-179 OS Chikungunya virus #=GS D8UUZ9/115-179 DE Envelope protein #=GS D8UUZ9/115-179 DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; #=GS A0A221S5X0/258-322 AC A0A221S5X0 #=GS A0A221S5X0/258-322 OS Chikungunya virus #=GS A0A221S5X0/258-322 DE E1 #=GS A0A221S5X0/258-322 DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; #=GS A0A165DMX2/68-132 AC A0A165DMX2 #=GS A0A165DMX2/68-132 OS Chikungunya virus #=GS A0A165DMX2/68-132 DE Envelope protein #=GS A0A165DMX2/68-132 DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; #=GS A0A221I1Y2/915-979 AC A0A221I1Y2 #=GS A0A221I1Y2/915-979 OS Chikungunya virus #=GS A0A221I1Y2/915-979 DE Structural polyprotein #=GS A0A221I1Y2/915-979 DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; #=GS A0A221I1H3/924-988 AC A0A221I1H3 #=GS A0A221I1H3/924-988 OS Chikungunya virus #=GS A0A221I1H3/924-988 DE Structural polyprotein #=GS A0A221I1H3/924-988 DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; #=GS A0A221I1I3/924-988 AC A0A221I1I3 #=GS A0A221I1I3/924-988 OS Chikungunya virus #=GS A0A221I1I3/924-988 DE Structural polyprotein #=GS A0A221I1I3/924-988 DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; #=GS A0A221I1U2/924-988 AC A0A221I1U2 #=GS A0A221I1U2/924-988 OS Chikungunya virus #=GS A0A221I1U2/924-988 DE Structural polyprotein #=GS A0A221I1U2/924-988 DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; #=GS A0A221I1J1/924-988 AC A0A221I1J1 #=GS A0A221I1J1/924-988 OS Chikungunya virus #=GS A0A221I1J1/924-988 DE Togavirin #=GS A0A221I1J1/924-988 DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; #=GS A0A0N9SIB1/442-506 AC A0A0N9SIB1 #=GS A0A0N9SIB1/442-506 OS Chikungunya virus #=GS A0A0N9SIB1/442-506 DE Polyprotein #=GS A0A0N9SIB1/442-506 DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; #=GS Q9J5S4/25-89 AC Q9J5S4 #=GS Q9J5S4/25-89 OS Semliki Forest virus #=GS Q9J5S4/25-89 DE Structural polyprotein #=GS Q9J5S4/25-89 DR ORG; Viruses; Togaviridae; Alphavirus; Semliki Forest virus; #=GS Q87046/115-179 AC Q87046 #=GS Q87046/115-179 OS Semliki Forest virus #=GS Q87046/115-179 DE Envelope glycoprotein 1 #=GS Q87046/115-179 DR ORG; Viruses; Togaviridae; Alphavirus; Semliki Forest virus; #=GF SQ 41 P03315/931-994 ----------HDHASAYKAHTASLKAKVRVMYGNVN-QTVDVYVNGDHAVTIGGTQFIFGPLSSAWTPFDNKIVV----- Q66579/906-985 AYVERSEECSIDHAKAYKVHTGTVQAMVNITYGSVSWRSADVYVNGETPAKIGDAKLIIGPLSSAWSPFDNKVVVHGHEV Q1H8W5/924-988 ---------KTEFASAYRAHTASASAKLRVLYQGNN-ITVTAYANGDHAVTVKDAKFIVGPMSSAWTPFDNKIVV----- Q5WQY5/924-988 ---------KTEFASAYRAHTASASGKLRVLYQGNN-VTVSAYANGDHAVTVKDAKFIVGPMSSAWTPFDNKIVV----- P05674/927-992 ---------LADHAEAYKAHTASVQAFLNITVGEHS-IVTTVYVNGETPVNFNGVKITAGPLSTAWTPFDRKIVQY---- Q77VY8/927-992 ---------LADHAAAYKAHTASVQALLNITVGEHS-TVTTVYVNGETPVNFNGVKLTAGPLSTAWTPFDRKIVQY---- Q5XXP3/924-988 ---------KTEFASAYRAHTASASAKLRVLYQGNN-ITVAAYANGDHAVTVKDAKFVVGPMSSAWTPFDNKIVV----- D7R998/924-988 ---------KTEFASAYRAHTASASAKLRVLYQGNN-ITVTAYANGDHAVTVKDAKFIVGPMSSAWTPFDNKIVV----- Q8JUX5/924-988 ---------KTEFASAYRAHTASASAKLRVLYQGNN-ITVTAYANGDHAVTVKDAKFIVGPMSSAWTPFDNKIVV----- P09592/927-992 ---------LADHAEAYKAHTASVQAFLNITVGEHS-IVTTVYVNGETPVNFNGVKLTAGPLSTAWTPFDRKIVQY---- P36330/927-992 ---------LADHAAAYKAHTASVQALLNITVGEHS-TVTTVYVNGETPVNFNGVKLTAGPLSTAWTPFDRKIVQY---- P36329/928-993 ---------LADHAEAYKAHTASVQAFLNITVGEHS-IVTTVYVNGETPVNFNGVKLTAGPLSTAWTPFDRKIVQY---- M1KAM9/928-993 ---------LADHAEAYKAHTASVQAFLNITVGEHS-IVTTVYVNGETPVNFNGVKLTAGPLSTAWTPFDRKIVQY---- P36332/928-993 ---------LADHAEAYKAHTASVQAFLNITVGEHS-IVTTVYVNGETPVNFNGVKLTAGPLSTAWTPFDRKIVQY---- Q52QV9/928-993 ---------LADHAEAYKAHTASVQAFLNITVGEHS-IVTTVYVNGETPVNFNGVKLTAGPLSTAWTPFDRKIVQY---- A0A0H4CWF2/924-988 ---------KTEFASAYRAHTASASAKLRVLYQGNN-ITVTAYANGDHAVTVKDAKFIVGPMSSAWTPFDNKIVV----- H6UZ12/48-112 ---------KTEFASAYRAHTASASAKLRVLYQGNN-ITVTAYANGDHAVTVKDAKFIVGPMSSAWTPFDNKIVV----- H6UZ13/48-112 ---------KTEFASAYRAHTASASAKLRVLYQGNN-ITVTAYANGDHAVTVKDAKFIVGPMSSAWTPFDNKIVV----- H6UZ11/48-112 ---------KTEFASAYRAHTASASAKLRVLYQGNN-ITVTAYANGDHAVTVKDAKFIVGPMSSAWTPFDNKIVV----- A5H446/39-103 ---------KTEFASAYRANTASASAKLRVLYQGNN-ITVTAYANGDHAVTVKDAKFIVGPMSSAWTPFDNKIVV----- B4XW93/43-107 ---------KTEFASAYRAHTASASAKLRVLYQGNN-ITVTAYANGDHAVTVKDAKFIVGPMSSAWTPFDNKIVV----- A0A173M1M2/31-95 ---------KTEFASAYRAHTASASAKLRVLYQGNN-ITVAAYANGDHAVTVKDAKIIVGPMSSAWTPFDNKIVV----- A5JQJ2/24-91 --------CKTEFASAYRAHTASASAKLRVLYQGNN-ITVTAYANGDHAVTVKDAKFIVGPMSSAWTPFDNKIVVYK--- A0A172QZZ7/20-84 -------SCKTEFASAYRAHTASASAKLRVLYQGNN-ITVTAYANGDHAVTVKDAKFIVGPMSSAWTPFDNKI------- F8SPE9/39-106 -------SCKTEFASAYRAHTASASAKLRVLYQGNN-ITVTAYANGDHAVTVKDAKFIVGPMSSAWTPFDNKIVVY---- D0QXC5/33-99 --------CKTEFASAYRAHTASASAKLRVLYQGNN-ITVTAYANGDHAVTVKDAKFIVGPMSSAWTPFDNKIVVY---- E5KW31/15-80 -----SESCMTEFASAYMAHTASASTKLRVLYQGNN-ITVTAYANGDHAVTVKDAKFIVGPMSSAWTPFDNK-------- A0A292Q9W8/599-663 ---------KTEFASAYRAHTASASAKLRVLYQGNN-ITVTAYANGDHAVTVKDAKFIVGPMSSAWTPFDNKIVV----- A0A292QAP5/599-663 ---------KTEFASAYRAHTASASAKLRVLYQGNN-ITVTAYANGDHAVTVKDAKFIVGPMSSAWTPFDNKIVV----- A0A292QBW8/599-663 ---------KTEFASAYRAHTASASAKLRVLYQGNN-ITVTAYANGDHAVTVKDAKFIVGPMSSAWTPFDNKIVV----- D8UUZ9/115-179 ---------KTEFASAYRAHTASASAKLRVLYQGIN-ITVTAYANGDHAVTVKDAKFIVGPMSSAWTPFDNKIVV----- A0A221S5X0/258-322 ---------KTEFASAYRAHTASASAKLRVLYQGNN-ITVTAYANGDHAVTVKDAKFIVGPMSSAWTPFDNKIVV----- A0A165DMX2/68-132 ---------KTEFALAYRAHTASASAKLRVLYQGNN-ITVAAYANGDHAVTVKDAKFIVGPMSSAWTPFDNKIVV----- A0A221I1Y2/915-979 ---------KTEFASAYRAHTASASAKLRVLYQGNN-ITVTAYANGDHAVTVKDAKFIVGPMSSAWTPFDNKIVV----- A0A221I1H3/924-988 ---------KTEFASAYRAHTASASAKLRVLYQGNN-ITVTAYANGDHAVTVKDAKFIVGPMSSAWTPFDNKIVV----- A0A221I1I3/924-988 ---------KTEFASAYRAHTASASAKLRVLYQGNN-ITVTAYANGDHAVTVKDAKFIVGPMSSAWTPFDNKIVV----- A0A221I1U2/924-988 ---------KTEFASAYRAHTASASAKLRVLYQGNN-ITVTAYANGDHAVTVKDAKFIVGPMSSAWTPFDNKIVV----- A0A221I1J1/924-988 ---------KTEFASAYRAHTASASAKLRVLYQGNN-ITVTAYANGDHAVTVKDAKFIVGPMSSAWTPFDNKIVV----- A0A0N9SIB1/442-506 ---------KTEFASAYRAHTASASAKLRVLYQGNN-ITVAAYANGDHAVTVKDAKFIVGPMSSAWTPFDNKIVV----- Q9J5S4/25-89 ---------KHDHASAYKAHTASLKAKVRVMYGSVN-QTVDVYVNGDHAVTIGGTQFIFGPLSSAWTPFDNKIVV----- Q87046/115-179 ---------KHDHASAYKAHTASLKAKVRVMYGNVN-QTVDVYVNGDHAVTIGGTQFIFGPLSSAWTPFDNKIVV----- #=GC scorecons 00000000045759599688988558476755554605556696997568555658665996969989996988410000 #=GC scorecons_70 ___________*_*_********__*_*_*_____*____*_*_***_**_____*_*_***********_***______ #=GC scorecons_80 _____________*_**_*****__*_*_*____________*_***__*_____*___**_*_******_***______ #=GC scorecons_90 _____________*_**_*****__*________________*_**___*_____*___**_*_******_*________ //