# STOCKHOLM 1.0
#=GF ID 2.60.40.820/FF/000015
#=GF DE T-box transcription factor mls-1
#=GF AC 2.60.40.820/FF/000015
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 71.722
#=GS Q95PX3/51-246      AC Q95PX3
#=GS Q95PX3/51-246      OS Caenorhabditis elegans
#=GS Q95PX3/51-246      DE Putative T-box protein 7
#=GS Q95PX3/51-246      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS Q95PX3/51-246      DR GO; GO:0000981; GO:0005634; GO:0005667; GO:0006357; 
#=GS O17212/17-210      AC O17212
#=GS O17212/17-210      OS Caenorhabditis elegans
#=GS O17212/17-210      DE T-box transcription factor mls-1
#=GS O17212/17-210      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS O17212/17-210      DR GO; GO:0005634; GO:0009791; GO:0042694; 
#=GS T1EJI0/1-181       AC T1EJI0
#=GS T1EJI0/1-181       OS Helobdella robusta
#=GS T1EJI0/1-181       DE Uncharacterized protein
#=GS T1EJI0/1-181       DR ORG; Eukaryota; Metazoa; Annelida; Clitellata; Hirudinea; Hirudinida; Glossiphoniiformes; Glossiphoniidae; Helobdella; Helobdella robusta; 
#=GS E9GYH8/1-176       AC E9GYH8
#=GS E9GYH8/1-176       OS Daphnia pulex
#=GS E9GYH8/1-176       DE Uncharacterized protein
#=GS E9GYH8/1-176       DR ORG; Eukaryota; Metazoa; Arthropoda; Crustacea; Branchiopoda; Phyllopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia; Daphnia pulex; 
#=GS E3MWH2/66-259      AC E3MWH2
#=GS E3MWH2/66-259      OS Caenorhabditis remanei
#=GS E3MWH2/66-259      DE CRE-MLS-1 protein
#=GS E3MWH2/66-259      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis remanei; 
#=GS A8X892/12-204      AC A8X892
#=GS A8X892/12-204      OS Caenorhabditis briggsae
#=GS A8X892/12-204      DE Protein CBR-MLS-1
#=GS A8X892/12-204      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS A0A2G5UKP9/12-204  AC A0A2G5UKP9
#=GS A0A2G5UKP9/12-204  OS Caenorhabditis nigoni
#=GS A0A2G5UKP9/12-204  DE Uncharacterized protein
#=GS A0A2G5UKP9/12-204  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS G0MG36/18-211      AC G0MG36
#=GS G0MG36/18-211      OS Caenorhabditis brenneri
#=GS G0MG36/18-211      DE Uncharacterized protein
#=GS G0MG36/18-211      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis brenneri; 
#=GS A0A261C772/16-209  AC A0A261C772
#=GS A0A261C772/16-209  OS Caenorhabditis latens
#=GS A0A261C772/16-209  DE Uncharacterized protein
#=GS A0A261C772/16-209  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis latens; 
#=GS A8X803/11-205      AC A8X803
#=GS A8X803/11-205      OS Caenorhabditis briggsae
#=GS A8X803/11-205      DE Protein CBR-TBX-7
#=GS A8X803/11-205      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS A0A2G5URT9/23-216  AC A0A2G5URT9
#=GS A0A2G5URT9/23-216  OS Caenorhabditis nigoni
#=GS A0A2G5URT9/23-216  DE Uncharacterized protein
#=GS A0A2G5URT9/23-216  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GF SQ 11
Q95PX3/51-246              FFDRKKDDGVIDNPN-----VELVNRNLWSTFLECGTEMIITKKGRRMFPLVKLKLSGLDKNSNYTIIMEM--ISVDKLRYKFWNGNWIV---------------AGVGEHHPLPTCFVHPQSPRSGEWWMT-----DGVDFKMAKLSNNPFNNDGHIVLNSMHRYNPRFHIVRA-DSSGQ---PILASLKTFSFKETEFIAVTAYQNDVVTKCKIDNNPFAKGFRN-----------
O17212/17-210              ----EKRKQIITKDNCKFIRVFLQSSNLWRRFHNLGTEMIVTKSGRRMFPTLSVIIAGLDPVKSYVVMVDLECIEMKRFRYSFHQSKWIS---------------TGPGESELPSRMFVHTDSPARGAHWMR-----APVSFDKMKLTNNQLDNNGHIIVNSMHKYRPRVHIIEQ-DDS--------QKRHTFSFEETEFIAVTAYQNHRITSLKIESNPFAKGFRE-----------
T1EJI0/1-181               ---------------------------LWKKFDVIGTEMIITKSGRRMFPPLKITLNNLDPDVKYAILLDV--IQVDQYRYRYHNSRWSSTLHPISLALFPPNNYTTPSLPWLQGKTYVHPDTPSLGSHWMKRSKQEGSVIFNKVKLTNNFLEETGNIPLQSMHKYIPRIHV-----------------YKTFIFQETSFIAVTAYQNERITQLKIDHNPFARGFRD-----------
E9GYH8/1-176               ---------------------------LWQQFHQIGTEMIITKLGRRMFPTLKVNLSGLDPNTKYFVLLDL--VLADDSRFRF-NAGWLR---------------SGKAEPQWPSRIYTHPDSPATGAQWMK-----HEISFQKVKLTNNTMDQQGHLVLTSMHKYVPRIHVIAA-SDYASLHWGMPTTINTAAFNVCSFIAVTAYANDRMTQLKIDNNPFAKGFRE-----------
E3MWH2/66-259              ----TVKQKIHSEERLHLIRVFLQSSNLWRRFHSLGTEMIVTKSGRRMFPTLSVIIAGLDPVKNYVVMVDLECIELKRFRYSFHQSKWIS---------------TGPGESELPSRMFVHSDSPARGAHWMR-----APVSFDKMKLTNNQLDNNGHIIVNSMHKYRPRVHIIEQ-DGS--------QMRHTFSFEETEFIAVTAYQNHRITSLKIESNPFAKGFRE-----------
A8X892/12-204              --ARKPKRKIGED---RLIRVFLQSANLWRRFHSLGTEMIVTKSGRRMFPTLSVIIAGLDPVKNYVVMVDLECIELKRFRYSFHQSKWIS---------------TGPGESELPSRMFVHSDSPARGAHWMR-----SPVSFDKMKLTNNQLDNNGHIIVNSMHKYRPRVHVIEQ-DEA--------KTRHTFSFEETDFIAVTAYQNHRITSLKIESNPFAKGFRE-----------
A0A2G5UKP9/12-204          --ARKPKRKIGED---RLIRVFLQSANLWRRFHSLGTEMIVTKSGRRMFPTLSVIIAGLDPVKNYVVMVDLECIELKRFRYSFHQSKWIS---------------TGPGESELPSRMFVHSDSPARGAHWMR-----SPVSFDKMKLTNNQLDNNGHIIVNSMHKYRPRVHVIEQ-DEA--------KTRHTFSFEETEFIAVTAYQNHRITSLKIESNPFAKGFRE-----------
G0MG36/18-211              -----AKRKISHEESPKLIRVFLQSSSLWRRFHSLGTEMIVTKSGRRMFPTLSVIISGLDPVKNYVVMVDLECIELKRFRYSFHQSKWIS---------------TGPGESELPSRMFVHSDSPARGAHWMR-----APVSFDKMKLTNNQLDNNGHIIVNSMHKYRPRVHIIEQGGEA--------QTRHSFSFEETEFIAVTAYQNHRITSLKIESNPFAKGFRE-----------
A0A261C772/16-209          ----TVKQKIHSEERLHLIRVFLQSSNLWRRFHSLGTEMIVTKSGRRMFPTLSVIIAGLDPVKNYVVMVDLECVELKRFRYSFHQSKWIS---------------TGPGESELPSRMFVHSDSPARGAHWMR-----APVSFDKMKLTNNQLDNNGHIIVNSMHKYRPRVHIIEQ-DGS--------QKRHTFSFXETEFIAVTAYQNHRITSLKIESNPFAKGFRE-----------
A8X803/11-205              -FIQNNEKSVDDKPH-----AELEGQDLWKEFSVKGTEMVITKKGRRMFPMIRTKLYGLDWKSKYIMMLEM--VQYDCFRYKFTNGKWEV---------------SGKGDIQPIRAPVMHPGSPKTGEDWMK-----DGACFKMLKLSNDPMNADGHIFLNSMHRYVPRFHIVRC-DCFGN---PIFSTFKSFVFDHTDFIAVTAYQNIEVTAKKIANNPFAKGFRK-----------
A0A2G5URT9/23-216          -------------PN-----AELEGQDLWKEFSVKGTEMVITKKGRRMFPMIRTKLYGLDWESKYIMMLEM--VQYDRFRYKFTNGKWEV---------------AGKGDIQPIRAPVMHPGSPKTGEDWMK-----DGACFKMLKLSNDLMNADGHIFLNSMHRYVPRFHIVRC-DSFGN---PIFSTVKSFVFDHTDFIAVTAYQNIEVTAKKIANNPFAKGFRKQNLEEKKRRSR
#=GC scorecons             0000112112111110011132422239954943399997799499999946453637994335946657611743545984835559440000000000000005746544444435695579439449950000034649455996973664497746699979399597532052210000010233567494575999999979356944995599998999500000000000
#=GC scorecons_70          ___________________________**__*___********_******_*___*_***____*__*_*___*_____**_*____*__________________*_*__________*__**__*__**__________*___*****_____***_*******_**_**___________________**_*__*_*********__**__**__********____________
#=GC scorecons_80          ___________________________**__*___*****_**_******_______***____*____*_________**_*____*__________________*____________*__**__*__**__________*___**_*______***___*****_**_*_____________________*_*__*_*********___*__**__********____________
#=GC scorecons_90          ___________________________**__*___****__**_******________**____*______________**_*____*_______________________________*___*__*__**__________*___**_*______*_____***_*_**_*_______________________*____*******_*___*__**__********____________
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