# STOCKHOLM 1.0
#=GF ID 2.60.40.4310/FF/000001
#=GF DE Structural polyprotein
#=GF AC 2.60.40.4310/FF/000001
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 45.638
#=GS 3n44B02/175-229     AC Q1H8W5
#=GS 3n44B02/175-229     OS Chikungunya virus
#=GS 3n44B02/175-229     DE Togavirin
#=GS 3n44B02/175-229     DR CATH; 3n44; B:175-229; 
#=GS 3n44B02/175-229     DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; 
#=GS 3n44B02/175-229     DR GO; GO:0042802; 
#=GS P03315/508-562      AC P03315
#=GS P03315/508-562      OS Semliki Forest virus
#=GS P03315/508-562      DE Structural polyprotein
#=GS P03315/508-562      DR ORG; Viruses; Togaviridae; Alphavirus; Semliki Forest virus; 
#=GS P03315/508-562      DR GO; GO:0019068; GO:0044174; 
#=GS P03315/508-562      DR EC; 3.4.21.90; 
#=GS 3n43B02/175-229     AC Q1H8W5
#=GS 3n43B02/175-229     OS Chikungunya virus
#=GS 3n43B02/175-229     DE Togavirin
#=GS 3n43B02/175-229     DR CATH; 3n43; B:175-229; 
#=GS 3n43B02/175-229     DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; 
#=GS 3n43B02/175-229     DR GO; GO:0042802; 
#=GS 3n42B02/175-229     AC Q1H8W5
#=GS 3n42B02/175-229     OS Chikungunya virus
#=GS 3n42B02/175-229     DE Togavirin
#=GS 3n42B02/175-229     DR CATH; 3n42; B:175-229; 
#=GS 3n42B02/175-229     DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; 
#=GS 3n42B02/175-229     DR GO; GO:0042802; 
#=GS 3n41B02/175-229     AC Q1H8W5
#=GS 3n41B02/175-229     OS Chikungunya virus
#=GS 3n41B02/175-229     DE Togavirin
#=GS 3n41B02/175-229     DR CATH; 3n41; B:175-229; 
#=GS 3n41B02/175-229     DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; 
#=GS 3n41B02/175-229     DR GO; GO:0042802; 
#=GS 3n40P03/235-289     AC Q1H8W5
#=GS 3n40P03/235-289     OS Chikungunya virus
#=GS 3n40P03/235-289     DE Togavirin
#=GS 3n40P03/235-289     DR CATH; 3n40; P:239-293; 
#=GS 3n40P03/235-289     DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; 
#=GS 3n40P03/235-289     DR GO; GO:0042802; 
#=GS D7R998/500-554      AC D7R998
#=GS D7R998/500-554      OS Chikungunya virus
#=GS D7R998/500-554      DE Togavirin
#=GS D7R998/500-554      DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; 
#=GS D7R998/500-554      DR EC; 3.4.21.90; 
#=GS Q8JUX5/500-554      AC Q8JUX5
#=GS Q8JUX5/500-554      OS Chikungunya virus strain S27-African prototype
#=GS Q8JUX5/500-554      DE Structural polyprotein
#=GS Q8JUX5/500-554      DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; 
#=GS Q8JUX5/500-554      DR EC; 3.4.21.90; 
#=GS Q5WQY5/500-554      AC Q5WQY5
#=GS Q5WQY5/500-554      OS Chikungunya virus strain Nagpur
#=GS Q5WQY5/500-554      DE Structural polyprotein
#=GS Q5WQY5/500-554      DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; 
#=GS Q5WQY5/500-554      DR EC; 3.4.21.90; 
#=GS Q5XXP3/500-554      AC Q5XXP3
#=GS Q5XXP3/500-554      OS Chikungunya virus strain Senegal 37997
#=GS Q5XXP3/500-554      DE Structural polyprotein
#=GS Q5XXP3/500-554      DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; 
#=GS Q5XXP3/500-554      DR EC; 3.4.21.90; 
#=GS P0DOK1/500-554      AC P0DOK1
#=GS P0DOK1/500-554      OS Chikungunya virus strain S27-African prototype
#=GS P0DOK1/500-554      DE Frameshifted structural polyprotein
#=GS P0DOK1/500-554      DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; 
#=GS P0DOK1/500-554      DR EC; 3.4.21.90; 
#=GS P0DJZ6/508-562      AC P0DJZ6
#=GS P0DJZ6/508-562      OS Semliki Forest virus
#=GS P0DJZ6/508-562      DE Frameshifted structural polyprotein
#=GS P0DJZ6/508-562      DR ORG; Viruses; Togaviridae; Alphavirus; Semliki Forest virus; 
#=GS P0DJZ6/508-562      DR EC; 3.4.21.90; 
#=GS Q1H8W5/500-554      AC Q1H8W5
#=GS Q1H8W5/500-554      OS Chikungunya virus
#=GS Q1H8W5/500-554      DE Togavirin
#=GS Q1H8W5/500-554      DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; 
#=GS Q1H8W5/500-554      DR GO; GO:0042802; 
#=GS A0A0H4CWF2/500-554  AC A0A0H4CWF2
#=GS A0A0H4CWF2/500-554  OS Chikungunya virus
#=GS A0A0H4CWF2/500-554  DE Togavirin
#=GS A0A0H4CWF2/500-554  DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; 
#=GS A0A0K0XHI1/106-160  AC A0A0K0XHI1
#=GS A0A0K0XHI1/106-160  OS Chikungunya virus
#=GS A0A0K0XHI1/106-160  DE Envelope protein E2
#=GS A0A0K0XHI1/106-160  DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; 
#=GS H1ZYM0/175-229      AC H1ZYM0
#=GS H1ZYM0/175-229      OS Chikungunya virus
#=GS H1ZYM0/175-229      DE Envelope protein
#=GS H1ZYM0/175-229      DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; 
#=GS A0A292Q9W8/175-229  AC A0A292Q9W8
#=GS A0A292Q9W8/175-229  OS Chikungunya virus
#=GS A0A292Q9W8/175-229  DE Glycoproteins
#=GS A0A292Q9W8/175-229  DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; 
#=GS A0A292QAP5/175-229  AC A0A292QAP5
#=GS A0A292QAP5/175-229  OS Chikungunya virus
#=GS A0A292QAP5/175-229  DE Glycoproteins
#=GS A0A292QAP5/175-229  DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; 
#=GS A0A292QBW8/175-229  AC A0A292QBW8
#=GS A0A292QBW8/175-229  OS Chikungunya virus
#=GS A0A292QBW8/175-229  DE Glycoproteins
#=GS A0A292QBW8/175-229  DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; 
#=GS A0A221I1Y2/491-545  AC A0A221I1Y2
#=GS A0A221I1Y2/491-545  OS Chikungunya virus
#=GS A0A221I1Y2/491-545  DE Structural polyprotein
#=GS A0A221I1Y2/491-545  DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; 
#=GS A0A221I1H3/500-554  AC A0A221I1H3
#=GS A0A221I1H3/500-554  OS Chikungunya virus
#=GS A0A221I1H3/500-554  DE Structural polyprotein
#=GS A0A221I1H3/500-554  DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; 
#=GS A0A221I1V0/500-554  AC A0A221I1V0
#=GS A0A221I1V0/500-554  OS Chikungunya virus
#=GS A0A221I1V0/500-554  DE Togavirin
#=GS A0A221I1V0/500-554  DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; 
#=GS A0A221I1J1/500-554  AC A0A221I1J1
#=GS A0A221I1J1/500-554  OS Chikungunya virus
#=GS A0A221I1J1/500-554  DE Togavirin
#=GS A0A221I1J1/500-554  DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; 
#=GS Q87050/175-229      AC Q87050
#=GS Q87050/175-229      OS Semliki Forest virus
#=GS Q87050/175-229      DE E2 glycoprotein
#=GS Q87050/175-229      DR ORG; Viruses; Togaviridae; Alphavirus; Semliki Forest virus; 
#=GF SQ 24
3n44B02/175-229             TPDRTLMSQQSGNVKITVNGQTVRYKCNCGGSNEGLTTTDKVINNCKVDQCHAAV
P03315/508-562              TPDRTLLSQQSGNVKITVGGKKVKYNCTCGTGNVGTTNSDMTINTCLIEQCHVSV
3n43B02/175-229             TPDRTLMSQQSGNVKITVNGQTVRYKCNCGGSNEGLTTTDKVINNCKVDQCHAAV
3n42B02/175-229             TPDRTLMSQQSGNVKITVNGQTVRYKCNCGGSNEGLTTTDKVINNCKVDQCHAAV
3n41B02/175-229             TPDRTLMSQQSGNVKITVNGQTVRYKCNCGGSNEGLTTTDKVINNCKVDQCHAAV
3n40P03/235-289             TPDRTLMSQQSGNVKITVNGQTVRYKCNCGGSNEGLTTTDKVINNCKVDQCHAAV
D7R998/500-554              TPDRTLLSQQSGNVKITVNGRTVRYKCNCGGSNEGLITTDKVINNCKVDQCHAAV
Q8JUX5/500-554              TPDRTLLSQQSGNVKITVNGRTVRYKCNCGGSNEGLITTDKVINNCKVDQCHAAV
Q5WQY5/500-554              TPDRTLMSQQSGNVKITVNSQTVRYKCNCGDSNEGLTTTDKVINNCKVDQCHAAV
Q5XXP3/500-554              TPDRTLMTQQSGNVKITVNGQTVRYKCNCGGSNEGLTTTDKVINNCKIDQCHAAV
P0DOK1/500-554              TPDRTLLSQQSGNVKITVNSQTVRYKCNCGGSNEGLITTDKVINNCKVDQCHAAV
P0DJZ6/508-562              TPDRTLLSQQSGNVKITVGGKKVKYNCTCGTGNVGTTNSDMTINTCLIEQCHVSV
Q1H8W5/500-554              TPDRTLMSQQSGNVKITVNGQTVRYKCNCGGSNEGLTTTDKVINNCKVDQCHAAV
A0A0H4CWF2/500-554          TPDRTLMSQQSGNVKITVNGQTVRYKCNCGGSNEGLTTTDKVINNCKVDQCHAAV
A0A0K0XHI1/106-160          TPDRTLMSQQSGNVKITVNGQTVRYKCNCGGSNEGLTTTDKVINNCKVDQCHAAV
H1ZYM0/175-229              TPDRTLMSQQSGNVKITVNGQTVRYKCNCGGSNEGLTTTDKVINNCKVDQCHAAI
A0A292Q9W8/175-229          TPDRTLMSQQSGNVKITVNGQTVRYKCNCGGSNEGLTTTDKVINNCKVDQCHAAV
A0A292QAP5/175-229          TPDRTLMSQQSGNVKITVNGQTVRYKCNCGGSNEGLTTTDKVINNCKVDQCHAAV
A0A292QBW8/175-229          TPDRTLMSQQSGNVKITVNGQTVRYKCNCGGSNEGLTTTDKVINNCKVDQCHAAV
A0A221I1Y2/491-545          TPDRTLMSQQSGNVKITVNGQTVRYKCNCGGSNEGLITTDKVINNCKVDQCHAAV
A0A221I1H3/500-554          TPDRTLMSQQSGNVKITVNGQTVRYKCNCGGSNEGLITTDKVINNCKVDQCHAAV
A0A221I1V0/500-554          TPDRTLMSQQSGNVKITVNGQTVRYKCNCGGSNEGLITTDKVINNCKVDQCHAAV
A0A221I1J1/500-554          TPDRTLMSQQSGNVKITVNGQTVRYKCNCGGSNEGLITTDKVINNCKVDQCHAAV
Q87050/175-229              TPDRTLLSQQSGNVKITVGGKKVKYNCTCGTGNVGTTSSDKTINTCLIEQCHVSV
#=GC scorecons              9999996899999999995865979696995695957569559969477999668
#=GC scorecons_70           ******************_*__***_*_**__*_*_*__*__**_*_*****__*
#=GC scorecons_80           ******_***********_*__*_*_*_**__*_*____*__**_*___***__*
#=GC scorecons_90           ******_***********_*__*_*_*_**__*_*____*__**_*___***__*
//