# STOCKHOLM 1.0 #=GF ID 2.60.40.3000/FF/000001 #=GF DE Genome polyprotein #=GF AC 2.60.40.3000/FF/000001 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 55.094 #=GS 4ildB01/1-80 AC P19711 #=GS 4ildB01/1-80 OS Bovine viral diarrhea virus 1-NADL #=GS 4ildB01/1-80 DE Genome polyprotein #=GS 4ildB01/1-80 DR CATH; 4ild; B:783-857; #=GS 4ildB01/1-80 DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus A; #=GS 4ildB01/1-80 DR GO; GO:0003677; GO:0003723; GO:0005515; GO:0032993; GO:0033592; GO:0043489; GO:0044161; GO:1990814; GO:1990904; #=GS 4ildB01/1-80 DR EC; 2.7.7.48; 3.4.21.113; 3.6.1.15; 3.6.4.13; #=GS P19712/779-853 AC P19712 #=GS P19712/779-853 OS Hog cholera virus (strain Alfort) #=GS P19712/779-853 DE Genome polyprotein #=GS P19712/779-853 DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus C; #=GS P19712/779-853 DR GO; GO:0005515; #=GS P19712/779-853 DR EC; 2.7.7.48; 3.4.21.113; 3.6.1.15; 3.6.4.13; #=GS 4ildA01/1-80 AC P19711 #=GS 4ildA01/1-80 OS Bovine viral diarrhea virus 1-NADL #=GS 4ildA01/1-80 DE Genome polyprotein #=GS 4ildA01/1-80 DR CATH; 4ild; A:783-857; #=GS 4ildA01/1-80 DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus A; #=GS 4ildA01/1-80 DR GO; GO:0003677; GO:0003723; GO:0005515; GO:0032993; GO:0033592; GO:0043489; GO:0044161; GO:1990814; GO:1990904; #=GS 4ildA01/1-80 DR EC; 2.7.7.48; 3.4.21.113; 3.6.1.15; 3.6.4.13; #=GS P19711/780-857 AC P19711 #=GS P19711/780-857 OS Bovine viral diarrhea virus 1-NADL #=GS P19711/780-857 DE Genome polyprotein #=GS P19711/780-857 DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus A; #=GS P19711/780-857 DR GO; GO:0003677; GO:0003723; GO:0005515; GO:0032993; GO:0033592; GO:0043489; GO:0044161; GO:1990814; GO:1990904; #=GS P19711/780-857 DR EC; 2.7.7.48; 3.4.21.113; 3.6.1.15; 3.6.4.13; #=GS P21530/779-853 AC P21530 #=GS P21530/779-853 OS Classical swine fever virus - Brescia #=GS P21530/779-853 DE Genome polyprotein #=GS P21530/779-853 DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus C; #=GS P21530/779-853 DR EC; 2.7.7.48; 3.4.21.113; 3.6.1.15; 3.6.4.13; #=GS Q5U8X5/779-853 AC Q5U8X5 #=GS Q5U8X5/779-853 OS Classical swine fever virus #=GS Q5U8X5/779-853 DE Genome polyprotein #=GS Q5U8X5/779-853 DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus C; #=GS Q5U8X5/779-853 DR GO; GO:0005515; #=GS F2X8A1/779-853 AC F2X8A1 #=GS F2X8A1/779-853 OS Classical swine fever virus #=GS F2X8A1/779-853 DE Genome polyprotein #=GS F2X8A1/779-853 DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus C; #=GS F2X8A1/779-853 DR GO; GO:0005515; #=GS B1PVV8/779-853 AC B1PVV8 #=GS B1PVV8/779-853 OS Classical swine fever virus #=GS B1PVV8/779-853 DE Genome polyprotein #=GS B1PVV8/779-853 DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus C; #=GS B1PVV8/779-853 DR GO; GO:0005515; #=GS Q68871/779-853 AC Q68871 #=GS Q68871/779-853 OS Classical swine fever virus - Alfort/187 #=GS Q68871/779-853 DE Genome polyprotein #=GS Q68871/779-853 DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus C; #=GS Q68871/779-853 DR GO; GO:0005515; #=GS Q9YS30/779-853 AC Q9YS30 #=GS Q9YS30/779-853 OS Classical swine fever virus #=GS Q9YS30/779-853 DE Genome polyprotein #=GS Q9YS30/779-853 DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus C; #=GS Q9YS30/779-853 DR GO; GO:0005515; #=GS A0A1L7BAR4/88-165 AC A0A1L7BAR4 #=GS A0A1L7BAR4/88-165 OS Bovine viral diarrhea virus 1 #=GS A0A1L7BAR4/88-165 DE E2 #=GS A0A1L7BAR4/88-165 DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus A; #=GS A0A1L7BAR6/88-165 AC A0A1L7BAR6 #=GS A0A1L7BAR6/88-165 OS Bovine viral diarrhea virus 1 #=GS A0A1L7BAR6/88-165 DE E2 #=GS A0A1L7BAR6/88-165 DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus A; #=GS A0A1L7BAS2/88-165 AC A0A1L7BAS2 #=GS A0A1L7BAS2/88-165 OS Bovine viral diarrhea virus 1 #=GS A0A1L7BAS2/88-165 DE E2 #=GS A0A1L7BAS2/88-165 DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus A; #=GS A0A1L7BAS6/88-165 AC A0A1L7BAS6 #=GS A0A1L7BAS6/88-165 OS Bovine viral diarrhea virus 1 #=GS A0A1L7BAS6/88-165 DE E2 #=GS A0A1L7BAS6/88-165 DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus A; #=GS A0A1L7BAS8/88-165 AC A0A1L7BAS8 #=GS A0A1L7BAS8/88-165 OS Bovine viral diarrhea virus 1 #=GS A0A1L7BAS8/88-165 DE E2 #=GS A0A1L7BAS8/88-165 DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus A; #=GS A0A1L7BAS7/88-165 AC A0A1L7BAS7 #=GS A0A1L7BAS7/88-165 OS Bovine viral diarrhea virus 1 #=GS A0A1L7BAS7/88-165 DE E2 #=GS A0A1L7BAS7/88-165 DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus A; #=GS A0A1L7BAR9/88-165 AC A0A1L7BAR9 #=GS A0A1L7BAR9/88-165 OS Bovine viral diarrhea virus 1 #=GS A0A1L7BAR9/88-165 DE E2 #=GS A0A1L7BAR9/88-165 DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus A; #=GS V5RHX7/90-164 AC V5RHX7 #=GS V5RHX7/90-164 OS Classical swine fever virus #=GS V5RHX7/90-164 DE Envelope glycoprotein E2 #=GS V5RHX7/90-164 DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus C; #=GS Q5ZN69/112-187 AC Q5ZN69 #=GS Q5ZN69/112-187 OS Classical swine fever virus #=GS Q5ZN69/112-187 DE Envelope protein #=GS Q5ZN69/112-187 DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus C; #=GS A0A141ZTI8/89-164 AC A0A141ZTI8 #=GS A0A141ZTI8/89-164 OS Classical swine fever virus #=GS A0A141ZTI8/89-164 DE E2 #=GS A0A141ZTI8/89-164 DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus C; #=GS A0A1C9CJ50/90-164 AC A0A1C9CJ50 #=GS A0A1C9CJ50/90-164 OS Classical swine fever virus #=GS A0A1C9CJ50/90-164 DE Envelope glycoprotein E2 #=GS A0A1C9CJ50/90-164 DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus C; #=GS Q68954/236-310 AC Q68954 #=GS Q68954/236-310 OS Classical swine fever virus #=GS Q68954/236-310 DE Major envelope glycoprotein #=GS Q68954/236-310 DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus C; #=GS O57027/89-164 AC O57027 #=GS O57027/89-164 OS Pestivirus sp. strain 331 #=GS O57027/89-164 DE Envelope glycoprotein E2 #=GS O57027/89-164 DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus C; #=GS Q6TGC1/90-164 AC Q6TGC1 #=GS Q6TGC1/90-164 OS Classical swine fever virus #=GS Q6TGC1/90-164 DE Polyprotein #=GS Q6TGC1/90-164 DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus C; #=GS O57015/89-164 AC O57015 #=GS O57015/89-164 OS Pestivirus sp. strain 371 #=GS O57015/89-164 DE Envelope glycoprotein E2 #=GS O57015/89-164 DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus C; #=GS Q99BK1/779-853 AC Q99BK1 #=GS Q99BK1/779-853 OS Classical swine fever virus strain Eystrup #=GS Q99BK1/779-853 DE Genome polyprotein #=GS Q99BK1/779-853 DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus C; #=GS Q06526/779-853 AC Q06526 #=GS Q06526/779-853 OS Classical swine fever virus #=GS Q06526/779-853 DE Hog cholera virus structural protein mRNAbn #=GS Q06526/779-853 DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus C; #=GS Q6QT38/511-586 AC Q6QT38 #=GS Q6QT38/511-586 OS Classical swine fever virus #=GS Q6QT38/511-586 DE Polyprotein #=GS Q6QT38/511-586 DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus C; #=GS Q6QT34/512-586 AC Q6QT34 #=GS Q6QT34/512-586 OS Classical swine fever virus #=GS Q6QT34/512-586 DE Polyprotein #=GS Q6QT34/512-586 DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus C; #=GF SQ 29 4ildB01/1-80 LLEQEDVVEMDDNFEFGLCPCDAKPIVRGKFNTTLLNGPAFQMVCPIGWTGTVSCTSFNMDTLATTVVRTYRRSKPFPHR P19712/779-853 -----AIEEMDDDFGFGLCPFDTSPVIKGKYNTTLLNGSAFYLVCPIGWTGVVECTAVSPTTLRTEVVKTFRRDKPFPHR 4ildA01/1-80 LLEQEDVVEMDDNFEFGLCPCDAKPIVRGKFNTTLLNGPAFQMVCPIGWTGTVSCTSFNMDTLATTVVRTYRRSKPFPHR P19711/780-857 --KQEDVVEMNDNFEFGLCPCDAKPIVRGKFNTTLLNGPAFQMVCPIGWTGTVSCTSFNMDTLATTVVRTYRRSKPFPHR P21530/779-853 -----LTEEMGDDFGFGLCPYDTSPVVKGKYNTTLLNGSAFYLVCPIGWTGVIECTAVSPTTLRTEVVKTFRREKPFPYR Q5U8X5/779-853 -----STEEMGDDFGFGLCPFDTSPVVKGKYNTTLLNGSAFYLVCPIGWTGVIECTAVSPTTLRTEVVKTFRREKPFPHR F2X8A1/779-853 -----STEEMGDDFGFGLCPFDTSPVVKGKYNTTLLNGSAFYLVCPIGWTGVIECTAVSPTTLRTEVVKTFRREKPFPHR B1PVV8/779-853 -----STEEMGDDFGFGLCPFDTSPVVKGKYNTTLLNGSAFYLVCPIGWTGVIECTAVSPTTLRTEVVKTFRREKPFPHR Q68871/779-853 -----STEEMGDDFGFGLCPFDTSPVVKGKYNTTLLNGSAFYLVCPIGWTGVIECTAVSPTTLRTEVVKTFRRDKPFPHR Q9YS30/779-853 -----STEEMGDDFGFGLCPFDTSPVVKGKYNTTLLNGSAFYLVCPIGWTGVIECTAVSPTTLRTEVVKTFRREKPFPHR A0A1L7BAR4/88-165 --KQEDVVEMDDNFEFGLCPCDAKPIVRGKFNTTLLNGPAFQMVCPIGWTGTVSCMSFNMDTLATTVIRTYRRSKPFPHR A0A1L7BAR6/88-165 --KQEDVVEMDDNFEFGLCPCDAKPIVRGKFNTTLLNGPAFQMVCPIGWTGTVSCMSFNMDTLATTVIRTYRRSKPFPHR A0A1L7BAS2/88-165 --KQEDVVEMDDNFEFGLCPCDAKPIVRGKFNTTLLNGPAFQMVCPIGWTGTVSCMSFNMDTLATTVIRTYRRSKPFPHR A0A1L7BAS6/88-165 --KQEDVVEMDDNFEFGLCPCDAKPIVRGKFNTTLLNGPAFQMVCPIGWTGTVSCMSFNMDTLATTVIRTYRRSKPFPHR A0A1L7BAS8/88-165 --KQEDVVEMDDNFEFGLCPCDAKPIVRGKFNTTLLNGPAFQMVCPIGWTGTVSCMSFNMDTLATTVIRTYRRSKPFPHR A0A1L7BAS7/88-165 --KQEDVVEMDDNFEFGLCPCDAKPIVRGKFNTTLLNGPAFQMVCPIGWTGTVSCMSFNMDTLATTVIRTYRRSKPFPHR A0A1L7BAR9/88-165 --KQEDVVEMDDNFEFGLCPCDAKPIVRGKFNTTLLNGPAFQMVCPIGWTGTVSCMSFNMDTLATTVIRTYRRSKPFPHR V5RHX7/90-164 -----ATEEMDDDFGFGLCPFDTSPVIKGKYNTTLLNGSAFYLVCPIGWTGVVECTAVSPTTLRTEVVKTFRRDKPFPHR Q5ZN69/112-187 ----PSIEEMGDDFGFGLCPFDTSPVVKGRYNTTLLNGSAFYLVCPIGWTGVIECTAVSPTTLRTEVVKTFRREKPFPHR A0A141ZTI8/89-164 ----PAIEEMGDDFGFGLCPFDTTPVVKGKYNTTLLNGSAFYLVCPIGWTGVIECTAVSPTTLRTEVVKTFKREKPFPHR A0A1C9CJ50/90-164 -----STEEMGDDFGFGLCPFDTSPVVKGKYNTTLLNGSAFYLVCPIGWTGVIECTAVSPTTLRTEVVKTFRREKPFPHR Q68954/236-310 -----STEEMGDDFGFGLCPFDTSPVVKGKYNTTLLNGSAFYLVCPIGWTGVIECTAVSPTTLRTEVVKTFRREKPFPHR O57027/89-164 ----PSTEEMGDDFGFGLCPFDTSPVVKGKYNTTLLNGSAFYLVCPIGWTGIIECTAVSPTTLRTEVVKTFRREKPFPHR Q6TGC1/90-164 -----STEEMGDDFGFGLCPFNTSPVVKGKYNTTLLNGSAFYLVCPIGWTGVIECTAVSPTTLRTEVVKTFRREKPFPHS O57015/89-164 ----PAIEEMGDDFGFGLCPFDTIPVVKGKYNTTLLNGSAFYLVCPIGWTGVIECTAVSPTTLRTEVVKTFKREKPFPHR Q99BK1/779-853 -----STEEMGDDFGFGLCPFDTSPVVKGKYNTTLLNGSAFYLVCPIGWTGVIECTAVSPTTLRTEVVKTFRRDKPFPHR Q06526/779-853 -----STEEMGDDFGFGLCPFDTSPVVKGKYNTTLLNGSAFYLVCPIGWTGVIECTAVSPTTLRTEVVKTFRRDKPFPHR Q6QT38/511-586 ----PAIEEMGDDFGFGLCPFDTTPVVKGKYNTTLLNGSAFYLVCPIGWTGVIECTAVSPTTLRTEVVKTFKREKPFPHR Q6QT34/512-586 -----STEEMGDDFGFGLCPFDTRPVVKGKYNATLVNGSAFYLVCPIGWTGVIECTAVSPTTLRTEVVKTFRRDKPFPHR #=GC scorecons 00112455995969699999586497879879899899699569999999957596656559959597797895999988 #=GC scorecons_70 ________**_***_*****_**_**************_**_*********_*_*______**_*_*******_****** #=GC scorecons_80 ________**_*_*_*****_*__*_*_**********_**__********___*______**_*_**_****_****** #=GC scorecons_90 ________**_*_*_*****_*__*_*_**_*******_**__********___*______**_*_*__*_**_****** //