# STOCKHOLM 1.0
#=GF ID 2.60.40.10/FF/001786
#=GF DE PKD1 isoform 1
#=GF AC 2.60.40.10/FF/001786
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 84.658
#=GS 1b4rA00/1-80        AC P98161
#=GS 1b4rA00/1-80        OS Homo sapiens
#=GS 1b4rA00/1-80        DE Polycystin-1
#=GS 1b4rA00/1-80        DR CATH; 1b4r; A:8-87; 
#=GS 1b4rA00/1-80        DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS 1b4rA00/1-80        DR GO; GO:0000139; GO:0001701; GO:0001822; GO:0001892; GO:0002133; GO:0005262; GO:0005515; GO:0005634; GO:0005737; GO:0005783; GO:0005794; GO:0005886; GO:0005887; GO:0005929; GO:0006611; GO:0007050; GO:0007156; GO:0007160; GO:0007161; GO:0007259; GO:0007507; GO:0009653; GO:0016021; GO:0016323; GO:0018105; GO:0019901; GO:0019904; GO:0021510; GO:0021915; GO:0030660; GO:0031514; GO:0032092; GO:0034703; GO:0034704; GO:0042813; GO:0042994; GO:0043588; GO:0044325; GO:0045737; GO:0045944; GO:0048565; GO:0048754; GO:0048806; GO:0050982; GO:0051216; GO:0051290; GO:0060170; GO:0060428; GO:0060674; GO:0061136; GO:0070062; GO:0070588; GO:0072164; GO:0072177; GO:0072205; GO:0072218; GO:0072237; GO:0072287; GO:0198738; GO:2000045; 
#=GS O08852/275-354      AC O08852
#=GS O08852/275-354      OS Mus musculus
#=GS O08852/275-354      DE Polycystin-1
#=GS O08852/275-354      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS O08852/275-354      DR GO; GO:0001502; GO:0001568; GO:0001701; GO:0001822; GO:0001889; GO:0001892; GO:0002133; GO:0005262; GO:0005515; GO:0005634; GO:0005737; GO:0005783; GO:0005794; GO:0005886; GO:0005887; GO:0005929; GO:0006611; GO:0006807; GO:0006816; GO:0007050; GO:0007204; GO:0007259; GO:0007507; GO:0009986; GO:0016020; GO:0016323; GO:0016328; GO:0018105; GO:0019901; GO:0019904; GO:0030010; GO:0030155; GO:0031514; GO:0032092; GO:0034405; GO:0034703; GO:0034704; GO:0036303; GO:0042813; GO:0042994; GO:0044325; GO:0045737; GO:0045944; GO:0048754; GO:0050982; GO:0051290; GO:0060236; GO:0060674; GO:0061136; GO:0070062; GO:0070588; GO:0098609; GO:0198738; GO:2000045; 
#=GS F1MAD3/275-354      AC F1MAD3
#=GS F1MAD3/275-354      OS Rattus norvegicus
#=GS F1MAD3/275-354      DE Polycystin 1, transient receptor potential channel-interacting
#=GS F1MAD3/275-354      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Rattus; Rattus norvegicus; 
#=GS F1MAD3/275-354      DR GO; GO:0005794; GO:0007204; GO:0016020; GO:0016328; 
#=GS F1QIA9/280-366      AC F1QIA9
#=GS F1QIA9/280-366      OS Danio rerio
#=GS F1QIA9/280-366      DE Polycystic kidney disease 1a
#=GS F1QIA9/280-366      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Otomorpha; Ostariophysi; Cypriniphysae; Cypriniformes; Cyprinoidei; Cyprinidae; Danio; Danio rerio; 
#=GS F1QIA9/280-366      DR GO; GO:0001889; GO:0001946; GO:0032965; GO:0048793; 
#=GS Q9ERV0/266-345      AC Q9ERV0
#=GS Q9ERV0/266-345      OS Rattus norvegicus
#=GS Q9ERV0/266-345      DE Pkd1
#=GS Q9ERV0/266-345      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Rattus; Rattus norvegicus; 
#=GS Q9ERV0/266-345      DR GO; GO:0016301; GO:0043066; 
#=GS P98161/275-354      AC P98161
#=GS P98161/275-354      OS Homo sapiens
#=GS P98161/275-354      DE Polycystin-1
#=GS P98161/275-354      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS P98161/275-354      DR GO; GO:0000139; GO:0001701; GO:0001822; GO:0001892; GO:0002133; GO:0005262; GO:0005515; GO:0005634; GO:0005737; GO:0005783; GO:0005794; GO:0005886; GO:0005887; GO:0005929; GO:0006611; GO:0007050; GO:0007156; GO:0007160; GO:0007161; GO:0007259; GO:0007507; GO:0009653; GO:0016021; GO:0016323; GO:0018105; GO:0019901; GO:0019904; GO:0021510; GO:0021915; GO:0030660; GO:0031514; GO:0032092; GO:0034703; GO:0034704; GO:0042813; GO:0042994; GO:0043588; GO:0044325; GO:0045737; GO:0045944; GO:0048565; GO:0048754; GO:0048806; GO:0050982; GO:0051216; GO:0051290; GO:0060170; GO:0060428; GO:0060674; GO:0061136; GO:0070062; GO:0070588; GO:0072164; GO:0072177; GO:0072205; GO:0072218; GO:0072237; GO:0072287; GO:0198738; GO:2000045; 
#=GS Q15142/210-287      AC Q15142
#=GS Q15142/210-287      OS Homo sapiens
#=GS Q15142/210-287      DE Polycystic kidney disease-associated protein
#=GS Q15142/210-287      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS W5M582/313-387      AC W5M582
#=GS W5M582/313-387      OS Lepisosteus oculatus
#=GS W5M582/313-387      DE Uncharacterized protein
#=GS W5M582/313-387      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus; Lepisosteus oculatus; 
#=GS A0A2K6DWP2/277-356  AC A0A2K6DWP2
#=GS A0A2K6DWP2/277-356  OS Macaca nemestrina
#=GS A0A2K6DWP2/277-356  DE Uncharacterized protein
#=GS A0A2K6DWP2/277-356  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Macaca; Macaca nemestrina; 
#=GS H2NPT1/275-354      AC H2NPT1
#=GS H2NPT1/275-354      OS Pongo abelii
#=GS H2NPT1/275-354      DE Polycystin 1, transient receptor potential channel interacting
#=GS H2NPT1/275-354      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Ponginae; Pongo; Pongo abelii; 
#=GS A0A2K5K5V5/198-277  AC A0A2K5K5V5
#=GS A0A2K5K5V5/198-277  OS Colobus angolensis palliatus
#=GS A0A2K5K5V5/198-277  DE Uncharacterized protein
#=GS A0A2K5K5V5/198-277  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Colobinae; Colobus; Colobus angolensis; Colobus angolensis palliatus; 
#=GS A0A2K5XLP8/213-292  AC A0A2K5XLP8
#=GS A0A2K5XLP8/213-292  OS Mandrillus leucophaeus
#=GS A0A2K5XLP8/213-292  DE Uncharacterized protein
#=GS A0A2K5XLP8/213-292  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Mandrillus; Mandrillus leucophaeus; 
#=GS A0A2K5LYC7/277-356  AC A0A2K5LYC7
#=GS A0A2K5LYC7/277-356  OS Cercocebus atys
#=GS A0A2K5LYC7/277-356  DE Uncharacterized protein
#=GS A0A2K5LYC7/277-356  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Cercocebus; Cercocebus atys; 
#=GS A0A096NL12/277-356  AC A0A096NL12
#=GS A0A096NL12/277-356  OS Papio anubis
#=GS A0A096NL12/277-356  DE Uncharacterized protein
#=GS A0A096NL12/277-356  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Papio; Papio anubis; 
#=GS A0A2K6PUS3/275-354  AC A0A2K6PUS3
#=GS A0A2K6PUS3/275-354  OS Rhinopithecus roxellana
#=GS A0A2K6PUS3/275-354  DE Uncharacterized protein
#=GS A0A2K6PUS3/275-354  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Colobinae; Rhinopithecus; Rhinopithecus roxellana; 
#=GS G3QVU1/275-354      AC G3QVU1
#=GS G3QVU1/275-354      OS Gorilla gorilla gorilla
#=GS G3QVU1/275-354      DE Polycystin 1, transient receptor potential channel interacting
#=GS G3QVU1/275-354      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Gorilla; Gorilla gorilla; Gorilla gorilla gorilla; 
#=GS A0A2I3T3E2/203-282  AC A0A2I3T3E2
#=GS A0A2I3T3E2/203-282  OS Pan troglodytes
#=GS A0A2I3T3E2/203-282  DE Uncharacterized protein
#=GS A0A2I3T3E2/203-282  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Pan; Pan troglodytes; 
#=GS F7HI29/277-356      AC F7HI29
#=GS F7HI29/277-356      OS Macaca mulatta
#=GS F7HI29/277-356      DE Uncharacterized protein
#=GS F7HI29/277-356      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Macaca; Macaca mulatta; 
#=GS A0A2K5W4T9/296-375  AC A0A2K5W4T9
#=GS A0A2K5W4T9/296-375  OS Macaca fascicularis
#=GS A0A2K5W4T9/296-375  DE Uncharacterized protein
#=GS A0A2K5W4T9/296-375  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Macaca; Macaca fascicularis; 
#=GS A0A2K6JVP9/241-320  AC A0A2K6JVP9
#=GS A0A2K6JVP9/241-320  OS Rhinopithecus bieti
#=GS A0A2K6JVP9/241-320  DE Uncharacterized protein
#=GS A0A2K6JVP9/241-320  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Colobinae; Rhinopithecus; Rhinopithecus bieti; 
#=GS A0A3G1GT95/296-374  AC A0A3G1GT95
#=GS A0A3G1GT95/296-374  OS Danio rerio
#=GS A0A3G1GT95/296-374  DE Polycystin 1
#=GS A0A3G1GT95/296-374  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Otomorpha; Ostariophysi; Cypriniphysae; Cypriniformes; Cyprinoidei; Cyprinidae; Danio; Danio rerio; 
#=GS A0A3G1GT95/296-374  DR GO; GO:0001889; GO:0001946; GO:0032965; GO:0048793; 
#=GS A0A2J8S8G4/275-354  AC A0A2J8S8G4
#=GS A0A2J8S8G4/275-354  OS Pongo abelii
#=GS A0A2J8S8G4/275-354  DE PKD1 isoform 1
#=GS A0A2J8S8G4/275-354  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Ponginae; Pongo; Pongo abelii; 
#=GS W5M5A6/252-326      AC W5M5A6
#=GS W5M5A6/252-326      OS Lepisosteus oculatus
#=GS W5M5A6/252-326      DE Uncharacterized protein
#=GS W5M5A6/252-326      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus; Lepisosteus oculatus; 
#=GF SQ 23
1b4rA00/1-80                ---------ATLVGPHGPLASGQLAAFHIAAPLPVTATRWDFGDGSAEVDAAGP--AASHRYVLPGRYHVTAVLALGAGSALLGTDVQVEA-
O08852/275-354              ---------ATLVGPHGPLASGQPADFHITSSLPISSTRWNFGDGSPEVDMASP--AATHFYVLPGSYHMTVVLALGAGSALLETEVQVEA-
F1MAD3/275-354              ---------AALVGPHGPLASGQPADFHINSPLPISSTCWNFGDGSPEVDMAGP--AATHSYVLPGGYHVTVVLTLGAGSALLETEVQVEV-
F1QIA9/280-366              RDVFQVPKHATT--PPQQV---KWAVLSVASSVSPASFSWDFGDLSPRVNTSTPNTTARHKYGVPGRYQAHVSLSAGHQEIMAQGSVSVELP
Q9ERV0/266-345              ---------AALVGPHGPLASGQPADFHINSPLPISSTCWNFGDGSPEVDMAGP--AATHSYVLPGGYHVTVVLTLGAGSALLETEVQVEV-
P98161/275-354              ---------ATLVGPHGPLASGQLAAFHIAAPLPVTATRWDFGDGSAEVDAAGP--AASHRYVLPGRYHVTAVLALGAGSALLGTDVQVEA-
Q15142/210-287              -----------LVGPHGPLASGQLAAFHIAAPLPVTATRWDFGDGSAEVDAAGP--AASHRYVLPGRYHVTAVLALGAGSALLGTDVQVEA-
W5M582/313-387              ---------RQL----QAFSVHKEATLSISISVSVSTLSWDFGDLTPLLNTTTT--WASHKYALPGRYRVKVTLWSGNKDKTIHTDIDVI--
A0A2K6DWP2/277-356          ---------AALVGPHGPLASGQLAAFHIAAPLPVTATRWDFGDGSPEVDAAGP--AASHRYVLPGRYHVTAVVALGVGSALLGTNVQVEA-
H2NPT1/275-354              ---------AALVGPHGPLASGQLAAFHIAAPLPVTATRWDFGDGSPEVDAAGP--AASHRYVLPGRYHVTAVLALGAGSALLGTNVQVEA-
A0A2K5K5V5/198-277          ---------AALVGPHGPLASGQLAAFHIAAPLPVTATRWNFGDGSPEVDAAGP--AASHRYVLPGRYHVTAVVAVGVGSALLGTNVQVEA-
A0A2K5XLP8/213-292          ---------AALVGPHGPLASGQLAAFHIAAPLPVTATRWDFGDGSPEVDAAGP--AASHRYVLPGRYHVTAVVALGVGSALLGTNVQVEA-
A0A2K5LYC7/277-356          ---------AALVGPHGPLASGQLAAFYIAAPLPVTATRWDFGDGSPEVDAAGP--AASHRYVLPGRYHVTAVVALGVGSALLGTNVQVEV-
A0A096NL12/277-356          ---------AALVGPHGPLASGQLAAFHIAAPLPVTATRWDFGDGSPEVDAAGP--AASHRYVLPGRYHVTAVVALGVGSALLGTNVQVEA-
A0A2K6PUS3/275-354          ---------AALVGPHGPLASGQPAAFHIAAPLPVTATRWDFGDGSPEVDAAGP--AASHRYVLPGRYHVTAVVALGVGSALLGTNVQVEA-
G3QVU1/275-354              ---------AALVGPHGPLASGRLAAFHIAAPLPVTATRWDFGDGSPEVDAAGP--AASHRYVLPGRYHVTAVLALGAGSALLGTDVQVEA-
A0A2I3T3E2/203-282          ---------AALVGPHGPLASGQLAAFHIAAPLPVTATRWDFGDGSAEVDAAGP--AASHRYVLPGRYHVTAVLALGASSALLGTDVQVEA-
F7HI29/277-356              ---------AALVGPHGPLASGQLAAFHIAAPLPVTATRWDFGDGSPEVDAAGP--AASHRYVLPGRYHVTAVVALGVSSALLGTNVQVEA-
A0A2K5W4T9/296-375          ---------AALVGPHGPLASGQLAAFHIAAPLPVTATRWDFGDGSPEVDAAGP--AASHRYVLPGRYHVTAVVALGVSSALLGTNVQVEA-
A0A2K6JVP9/241-320          ---------AALVGPHGPLASGQPAAFHIAAPLPVTATRWDFGDGSPEVDAAGP--AASHRYVLPGRYHVTAVVALGVGSALLGTNVQVEA-
A0A3G1GT95/296-374          ---------ASL--PSRRVSVHSEAVLSVASSVSPASFSWDFGDLSPRVNTSTPNTTARHKYGVPGRYQAHVSLSAGHQEIMAQGSVSVE--
A0A2J8S8G4/275-354          ---------AALVGPHGPLASGQLAAFHIAAPLPVTATRWDFGDGSPEVDAAGP--AASHRYVLPGRYHVTAVLALGAGSALLGTNVQVEA-
W5M5A6/252-326              ---------RQL----QAFSVHKEATLSISISVSVSTLSWDFGDLTPLLNTTTT--WASHKYALPGRYRVKVTLWSGNKDKTIHTDIDVI--
#=GC scorecons              00000000064733535555445394657656665554597999477476555700495959579979665657449345555464759620
#=GC scorecons_70           ___________*____________*_*_*___*______*****_**_**___*___*_*_*_*****_*___*__*_______*_*_**__
#=GC scorecons_80           ___________*____________*___*__________*****__*_*________*_*_*_*****________*_________*_*___
#=GC scorecons_90           ________________________*______________*_***_____________*_*_*__**_*________*___________*___
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