# STOCKHOLM 1.0
#=GF ID 2.60.260.20/FF/000034
#=GF DE Chaperone protein DnaJ
#=GF AC 2.60.260.20/FF/000034
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 88.413
#=GS Q2GI75/120-149_211-252      AC Q2GI75
#=GS Q2GI75/120-149_211-252      OS Ehrlichia chaffeensis str. Arkansas
#=GS Q2GI75/120-149_211-252      DE Chaperone protein DnaJ
#=GS Q2GI75/120-149_211-252      DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Ehrlichia; canis group; Ehrlichia chaffeensis; 
#=GS Q2GI75/120-149_211-252      DR GO; GO:0006457; 
#=GS O66921/126-155_215-256      AC O66921
#=GS O66921/126-155_215-256      OS Aquifex aeolicus VF5
#=GS O66921/126-155_215-256      DE Chaperone protein DnaJ 2
#=GS O66921/126-155_215-256      DR ORG; Bacteria; Aquificae; Aquificae; Aquificales; Aquificaceae; Aquifex; Aquifex aeolicus; 
#=GS G4FCX5/126-147_225-265      AC G4FCX5
#=GS G4FCX5/126-147_225-265      OS Thermotoga maritima MSB8
#=GS G4FCX5/126-147_225-265      DE Chaperone protein DnaJ
#=GS G4FCX5/126-147_225-265      DR ORG; Bacteria; Thermotogae; Thermotogae; Thermotogales; Thermotogaceae; Thermotoga; Thermotoga maritima; 
#=GS Q9WZV3/126-147_225-265      AC Q9WZV3
#=GS Q9WZV3/126-147_225-265      OS Thermotoga maritima MSB8
#=GS Q9WZV3/126-147_225-265      DE Chaperone protein DnaJ
#=GS Q9WZV3/126-147_225-265      DR ORG; Bacteria; Thermotogae; Thermotogae; Thermotogales; Thermotogaceae; Thermotoga; Thermotoga maritima; 
#=GS P63968/116-138_213-252      AC P63968
#=GS P63968/116-138_213-252      OS Neisseria meningitidis Z2491
#=GS P63968/116-138_213-252      DE Chaperone protein DnaJ
#=GS P63968/116-138_213-252      DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria meningitidis; 
#=GS O84345/131-153_228-266      AC O84345
#=GS O84345/131-153_228-266      OS Chlamydia trachomatis D/UW-3/CX
#=GS O84345/131-153_228-266      DE Chaperone protein DnaJ
#=GS O84345/131-153_228-266      DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia trachomatis; 
#=GS A0A1D3F2P5/116-138_213-252  AC A0A1D3F2P5
#=GS A0A1D3F2P5/116-138_213-252  OS Neisseria gonorrhoeae
#=GS A0A1D3F2P5/116-138_213-252  DE Chaperone protein DnaJ
#=GS A0A1D3F2P5/116-138_213-252  DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria gonorrhoeae; 
#=GS Q823T2/131-153_228-266      AC Q823T2
#=GS Q823T2/131-153_228-266      OS Chlamydia caviae GPIC
#=GS Q823T2/131-153_228-266      DE Chaperone protein DnaJ
#=GS Q823T2/131-153_228-266      DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia caviae; 
#=GS W8JFN0/129-151_226-264      AC W8JFN0
#=GS W8JFN0/129-151_226-264      OS Chlamydia avium 10DC88
#=GS W8JFN0/129-151_226-264      DE Chaperone protein DnaJ
#=GS W8JFN0/129-151_226-264      DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia avium; 
#=GS Q3YT99/122-151_213-254      AC Q3YT99
#=GS Q3YT99/122-151_213-254      OS Ehrlichia canis str. Jake
#=GS Q3YT99/122-151_213-254      DE Chaperone protein DnaJ
#=GS Q3YT99/122-151_213-254      DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Ehrlichia; canis group; Ehrlichia canis; 
#=GS Q5FGQ8/121-150_212-253      AC Q5FGQ8
#=GS Q5FGQ8/121-150_212-253      OS Ehrlichia ruminantium str. Gardel
#=GS Q5FGQ8/121-150_212-253      DE Chaperone protein DnaJ
#=GS Q5FGQ8/121-150_212-253      DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Ehrlichia; canis group; Ehrlichia ruminantium; 
#=GS P63969/116-138_213-252      AC P63969
#=GS P63969/116-138_213-252      OS Neisseria meningitidis MC58
#=GS P63969/116-138_213-252      DE Chaperone protein DnaJ
#=GS P63969/116-138_213-252      DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria meningitidis; 
#=GS A1KR91/116-138_213-252      AC A1KR91
#=GS A1KR91/116-138_213-252      OS Neisseria meningitidis FAM18
#=GS A1KR91/116-138_213-252      DE Chaperone protein DnaJ
#=GS A1KR91/116-138_213-252      DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria meningitidis; 
#=GS A9LZV9/116-138_213-252      AC A9LZV9
#=GS A9LZV9/116-138_213-252      OS Neisseria meningitidis 053442
#=GS A9LZV9/116-138_213-252      DE Chaperone protein DnaJ
#=GS A9LZV9/116-138_213-252      DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria meningitidis; 
#=GS X5F5T5/116-138_213-252      AC X5F5T5
#=GS X5F5T5/116-138_213-252      OS Neisseria meningitidis
#=GS X5F5T5/116-138_213-252      DE Chaperone protein DnaJ
#=GS X5F5T5/116-138_213-252      DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria meningitidis; 
#=GS E0NCB9/116-138_213-252      AC E0NCB9
#=GS E0NCB9/116-138_213-252      OS Neisseria meningitidis ATCC 13091
#=GS E0NCB9/116-138_213-252      DE Chaperone protein DnaJ
#=GS E0NCB9/116-138_213-252      DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria meningitidis; 
#=GS A0A125WFW9/116-138_213-252  AC A0A125WFW9
#=GS A0A125WFW9/116-138_213-252  OS Neisseria meningitidis NM2795
#=GS A0A125WFW9/116-138_213-252  DE Chaperone protein DnaJ
#=GS A0A125WFW9/116-138_213-252  DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria meningitidis; 
#=GS E6MZJ2/116-138_213-252      AC E6MZJ2
#=GS E6MZJ2/116-138_213-252      OS Neisseria meningitidis H44/76
#=GS E6MZJ2/116-138_213-252      DE Chaperone protein DnaJ
#=GS E6MZJ2/116-138_213-252      DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria meningitidis; 
#=GS A0A0A8F5V5/116-138_213-252  AC A0A0A8F5V5
#=GS A0A0A8F5V5/116-138_213-252  OS Neisseria meningitidis LNP21362
#=GS A0A0A8F5V5/116-138_213-252  DE Chaperone protein DnaJ
#=GS A0A0A8F5V5/116-138_213-252  DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria meningitidis; 
#=GS Q5F5M1/116-138_213-252      AC Q5F5M1
#=GS Q5F5M1/116-138_213-252      OS Neisseria gonorrhoeae FA 1090
#=GS Q5F5M1/116-138_213-252      DE Chaperone protein DnaJ
#=GS Q5F5M1/116-138_213-252      DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria gonorrhoeae; 
#=GS B0BBX5/131-153_228-266      AC B0BBX5
#=GS B0BBX5/131-153_228-266      OS Chlamydia trachomatis L2b/UCH-1/proctitis
#=GS B0BBX5/131-153_228-266      DE Chaperone protein DnaJ
#=GS B0BBX5/131-153_228-266      DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia trachomatis; 
#=GS B0B7R0/131-153_228-266      AC B0B7R0
#=GS B0B7R0/131-153_228-266      OS Chlamydia trachomatis 434/Bu
#=GS B0B7R0/131-153_228-266      DE Chaperone protein DnaJ
#=GS B0B7R0/131-153_228-266      DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia trachomatis; 
#=GS Q3KM17/131-153_228-266      AC Q3KM17
#=GS Q3KM17/131-153_228-266      OS Chlamydia trachomatis A/HAR-13
#=GS Q3KM17/131-153_228-266      DE Chaperone protein DnaJ
#=GS Q3KM17/131-153_228-266      DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia trachomatis; 
#=GS G4NMS2/131-153_228-266      AC G4NMS2
#=GS G4NMS2/131-153_228-266      OS Chlamydia trachomatis A2497
#=GS G4NMS2/131-153_228-266      DE Chaperone protein DnaJ
#=GS G4NMS2/131-153_228-266      DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia trachomatis; 
#=GS A0A0E9D6Y0/131-153_228-266  AC A0A0E9D6Y0
#=GS A0A0E9D6Y0/131-153_228-266  OS Chlamydia trachomatis
#=GS A0A0E9D6Y0/131-153_228-266  DE Chaperone protein DnaJ
#=GS A0A0E9D6Y0/131-153_228-266  DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia trachomatis; 
#=GF SQ 25
Q2GI75/120-149_211-252              -GSDLRFDIEITLEDSFNGKKVPISYVTYVKRVRDEVNLLVTIPKGIESGNKIRLNGKGEAGYRGARSGDLYV---
O66921/126-155_215-256              -GEDIVVPVEITLEEAFKGTTVPIEVEREVPYGLVKETIKVKIPPGVRDGSKLVVEGKGHAGRYGGPPGDLYI---
G4FCX5/126-147_225-265              -GEDIRYEIEVTLSDLINGAEIP------------KVRRTVKIPPNVEDGTHLRITGGGNAGYYGGPYGDLIIIVR
Q9WZV3/126-147_225-265              -GEDIRYEIEVTLSDLINGAEIP------------KVRRTVKIPPNVEDGTHLRITGGGNAGYYGGPYGDLIIIVR
P63968/116-138_213-252              QGEDVQVGIEITLEEAAKGVK-------------KRKTVEVNIPAGIDDGQRIRLSGEGGPGMHGAPAGDLYVTVR
O84345/131-153_228-266              QGASKKVHITLSFEEAAKGVE-------------KERSVHVNIPAGVDSGMRLKMEGYGDAGQNGAPAGDLYVFI-
A0A1D3F2P5/116-138_213-252          QGEDVQVGIEITLEEAAKGVK-------------KRKTVEVNIPAGIDDGQRIRLSGEGGPGMHGAPAGDLYVTVR
Q823T2/131-153_228-266              QGASKKVHITLTFEEAARGVE-------------KERNVHVQIPAGVDSGMRLKMEGYGDAGQNGAPSGDLYVFI-
W8JFN0/129-151_226-264              QGASKKIHITLSFEEAARGVE-------------KERNVRVDIPAGVDSGMRLKMEGYGDAGQNGAPAGDLYVFI-
Q3YT99/122-151_213-254              -GSDLRFDVEITLEDSFNGKKVPISYVTYVKRVRDEVNLLVTIPKGIESGNKIRLNGKGEAGYRGARSGDLYV---
Q5FGQ8/121-150_212-253              -GSDLRLDIEITLEDSFNGTKVPINYVTHVKRVRDEVNLLVTVPKGIESGDKIRLNGKGEAGYRGAQSGDLYV---
P63969/116-138_213-252              QGEDVQVGIEITLEEAAKGVK-------------KRKTVEVNIPAGIDDGQRIRLSGEGGPGMHGAPAGDLYVTVR
A1KR91/116-138_213-252              QGEDVQVGIEITLEEAAKGVK-------------KRKTVEVNIPAGIDDGQRIRLSGEGGPGMHGAPAGDLYVTVR
A9LZV9/116-138_213-252              QGEDVQVGIEITLEEAAKGVK-------------KRKTVEVNIPAGIDDGQRIRLSGEGGPGMHGAPAGDLYVTVR
X5F5T5/116-138_213-252              QGEDVQVGIEITLEEAAKGVK-------------KRKTVEVNIPAGIDDGQRIRLSGEGGPGMHGAPAGDLYVTVR
E0NCB9/116-138_213-252              QGEDVQVGIEITLEEAAKGVK-------------KRKTVEVNIPAGIDDGQRIRLSGEGGPGMHGAPAGDLYVTVR
A0A125WFW9/116-138_213-252          QGEDVQVGIEITLEEAAKGVK-------------KRKTVEVNIPAGIDDGQRIRLSGEGGPGMHGAPAGDLYVTVR
E6MZJ2/116-138_213-252              QGEDVQVGIEITLEEAAKGVK-------------KRKTVEVNIPAGIDDGQRIRLSGEGGPGMHGAPAGDLYVTVR
A0A0A8F5V5/116-138_213-252          QGEDVQVGIEITLEEAAKGVK-------------KRKTVEVNIPAGIDDGQRIRLSGEGGPGMHGAPAGDLYVTVR
Q5F5M1/116-138_213-252              QGEDVQVGIEITLEEAAKGVK-------------KRKTVEVNIPAGIDDGQRIRLSGEGGPGMHGAPAGDLYVTVR
B0BBX5/131-153_228-266              QGASKKVHITLSFEEAAKGVE-------------KERSVHVNIPAGVDSGMRLKMEGYGDAGQNGAPAGDLYVFI-
B0B7R0/131-153_228-266              QGASKKVHITLSFEEAAKGVE-------------KERSVHVNIPAGVDSGMRLKMEGYGDAGQNGAPAGDLYVFI-
Q3KM17/131-153_228-266              QGASKKVHITLSFEEAAKGVE-------------KERSVHVNIPAGVDSGMRLKMEGYGDAGQNGAPAGDLYVFI-
G4NMS2/131-153_228-266              QGASKKVHITLSFEEAAKGVE-------------KERSVHVNIPAGVDSGMRLKMEGYGDAGQNGAPAGDLYVFI-
A0A0E9D6Y0/131-153_228-266          QGASKKVHITLSFEEAAKGVE-------------KERSVHVNIPAGVDSGMRLKMEGYGDAGQNGAPAGDLYVFI-
#=GC scorecons                      3946455486666776569550100000000000454453958957765936666493946934976599977231
#=GC scorecons_70                   _*_*____*_*****___*_____________________*_**_***_*_***__*_*_**__***_*****___
#=GC scorecons_80                   _*______*____**___*_____________________*_**_*___*______*_*__*__**__*****___
#=GC scorecons_90                   _*______*_________*_____________________*_**_____*______*_*__*__*___***_____
//