# STOCKHOLM 1.0
#=GF ID 2.60.210.10/FF/000017
#=GF DE TNF receptor-associated factor
#=GF AC 2.60.210.10/FF/000017
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 96.785
#=GS G5EG80/227-416      AC G5EG80
#=GS G5EG80/227-416      OS Caenorhabditis elegans
#=GS G5EG80/227-416      DE TNF Receptor Associated Factor (TRAF) homolog
#=GS G5EG80/227-416      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS G5EG80/227-416      DR GO; GO:0045087; GO:0050829; 
#=GS W4ZL25/355-552      AC W4ZL25
#=GS W4ZL25/355-552      OS Strongylocentrotus purpuratus
#=GS W4ZL25/355-552      DE Uncharacterized protein
#=GS W4ZL25/355-552      DR ORG; Eukaryota; Metazoa; Echinodermata; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus; Strongylocentrotus purpuratus; 
#=GS A7RI91/293-482      AC A7RI91
#=GS A7RI91/293-482      OS Nematostella vectensis
#=GS A7RI91/293-482      DE Predicted protein
#=GS A7RI91/293-482      DR ORG; Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella; Nematostella vectensis; 
#=GS T1F8S7/264-438      AC T1F8S7
#=GS T1F8S7/264-438      OS Helobdella robusta
#=GS T1F8S7/264-438      DE Uncharacterized protein
#=GS T1F8S7/264-438      DR ORG; Eukaryota; Metazoa; Annelida; Clitellata; Hirudinea; Hirudinida; Glossiphoniiformes; Glossiphoniidae; Helobdella; Helobdella robusta; 
#=GS W4Z4L5/287-479      AC W4Z4L5
#=GS W4Z4L5/287-479      OS Strongylocentrotus purpuratus
#=GS W4Z4L5/287-479      DE Uncharacterized protein
#=GS W4Z4L5/287-479      DR ORG; Eukaryota; Metazoa; Echinodermata; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus; Strongylocentrotus purpuratus; 
#=GS A7STV3/269-463      AC A7STV3
#=GS A7STV3/269-463      OS Nematostella vectensis
#=GS A7STV3/269-463      DE Predicted protein
#=GS A7STV3/269-463      DR ORG; Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella; Nematostella vectensis; 
#=GS A7STV5/269-459      AC A7STV5
#=GS A7STV5/269-459      OS Nematostella vectensis
#=GS A7STV5/269-459      DE Predicted protein
#=GS A7STV5/269-459      DR ORG; Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella; Nematostella vectensis; 
#=GS C3ZHV2/207-402      AC C3ZHV2
#=GS C3ZHV2/207-402      OS Branchiostoma floridae
#=GS C3ZHV2/207-402      DE Uncharacterized protein
#=GS C3ZHV2/207-402      DR ORG; Eukaryota; Metazoa; Chordata; Cephalochordata; Branchiostomidae; Branchiostoma; Branchiostoma floridae; 
#=GS F6T7F9/289-479      AC F6T7F9
#=GS F6T7F9/289-479      OS Ciona intestinalis
#=GS F6T7F9/289-479      DE Uncharacterized protein
#=GS F6T7F9/289-479      DR ORG; Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona; Ciona intestinalis; 
#=GS W5LYQ5/333-526      AC W5LYQ5
#=GS W5LYQ5/333-526      OS Lepisosteus oculatus
#=GS W5LYQ5/333-526      DE TNF receptor-associated factor
#=GS W5LYQ5/333-526      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus; Lepisosteus oculatus; 
#=GS H3EZT3/195-386      AC H3EZT3
#=GS H3EZT3/195-386      OS Pristionchus pacificus
#=GS H3EZT3/195-386      DE Uncharacterized protein
#=GS H3EZT3/195-386      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Diplogasteromorpha; Diplogasteroidea; Neodiplogasteridae; Pristionchus; Pristionchus pacificus; 
#=GS A0A1I7V528/179-367  AC A0A1I7V528
#=GS A0A1I7V528/179-367  OS Caenorhabditis tropicalis
#=GS A0A1I7V528/179-367  DE Uncharacterized protein
#=GS A0A1I7V528/179-367  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis tropicalis; 
#=GS E3NF06/226-418      AC E3NF06
#=GS E3NF06/226-418      OS Caenorhabditis remanei
#=GS E3NF06/226-418      DE CRE-TRF-1 protein
#=GS E3NF06/226-418      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis remanei; 
#=GS A8XZK5/199-390      AC A8XZK5
#=GS A8XZK5/199-390      OS Caenorhabditis briggsae
#=GS A8XZK5/199-390      DE Protein CBR-TRF-1
#=GS A8XZK5/199-390      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS A0A261CBA8/226-418  AC A0A261CBA8
#=GS A0A261CBA8/226-418  OS Caenorhabditis latens
#=GS A0A261CBA8/226-418  DE Uncharacterized protein
#=GS A0A261CBA8/226-418  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis latens; 
#=GS A0A2G5ULK7/227-417  AC A0A2G5ULK7
#=GS A0A2G5ULK7/227-417  OS Caenorhabditis nigoni
#=GS A0A2G5ULK7/227-417  DE Uncharacterized protein
#=GS A0A2G5ULK7/227-417  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS A0A1I7V529/179-363  AC A0A1I7V529
#=GS A0A1I7V529/179-363  OS Caenorhabditis tropicalis
#=GS A0A1I7V529/179-363  DE Uncharacterized protein
#=GS A0A1I7V529/179-363  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis tropicalis; 
#=GS A0A260YWG4/192-384  AC A0A260YWG4
#=GS A0A260YWG4/192-384  OS Caenorhabditis remanei
#=GS A0A260YWG4/192-384  DE Uncharacterized protein
#=GS A0A260YWG4/192-384  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis remanei; 
#=GF SQ 18
G5EG80/227-416              ----------TDLKGTYELMERDMGSFNDRQTRILSAAETCT-EMFGPQLIWKIDKLQQRTNEAKSGADTTIFSVPFMSHRFGYKMMACACLFGDG----SSAGKSISLYVLLLKGEFDPTLEWPFHRAIKISLLDQNPRPE-DRVNITYVIDPRKLKANEKFLARPRGERN-AAFGSQSFCSLA-ILQ---NYVKDDKIYVQIDVDRCET----
W4ZL25/355-552              -KEVWMRQKVIELESKAARKDSEIATLRNEVHSLQEETKDLREHVANGIFVWRLRKYSELRVSAERGEAMVRHSEGFYTGSCGYRLCVRVNINKSE----TRKVLYISLFVHFMQGKYDSSLEWPFRGSITLSLVDQNIDPELKQKNITERL---VAKSNLDAFKKPKTARNHKGFGYMEFASIE-SLEKEGLFIKDNTILIKVEVH--------
A7RI91/293-482              LE--------RKVEDVKTSSDRRIAELTHKLMRLETREIELEGRVCNGTFIWKLDNFRQCREGSIAGLTAAIHSPPFYTSMYGYKMCLRMNLNGVD----GGLGEHVSLFIHMMQGDWDGILEWPFIGRITLSILDQSDQID-SRRPISETL---VAKPNLLAFQRPTSPRNHKGYGYVEFCPID-QLTE-GQYIKNNSILVRIQIS-------R
T1F8S7/264-438              -------------------------YMLKQIAYLKKKSRILS-YLYERQYFWRIGNFKQSFKDAQKVSHEEIKSPVISTSRIGYRLQFITSLYGEG----RYQGQYMSVHARICPGEYDDLLSWPFSQIITLTLLDQCMDID-NRNHLPYTLNPKNVKDKKSLSKPSPNSKN-PLFGTETFVKLEDSLNH-EHYCLNDSIYILIEAH-------D
W4Z4L5/287-479              ----------LKNKAQLQTHDDLLMQHKDSLGVCMQKVRDLE-KLYGSQLVWKIDKYAERMQEAKQGKKVTIFSPPFLTSRHGYRLSVSCCLNGDG----KAKSHFMSIFVCINRGEYDALLPWPFSHRITFTLIDQCQDPT-ARRNISYNIKPNPCKENKAFLGRPLGERN-ASFGTQKFVPLN-MIKT-LDYIRDDTMFIKVQVD-YDNM--I
A7STV3/269-463              ---------VLEQKEKLDNHAQKFEEHETIMKQVDSRVGDLE-KIAHSQIIWRIEDYTRKLKEAKAGNAETLFSPTFTTSKHGYRLCASVCLNGDG----KGKGTHMSVFVSVLKGAFDALLKWPFHYRVTFFLLNQHENPE-ERKHVKFSIKPNPIPDNEPFLGRPRLEKN-ASFGGAKFIKHE-EIES-GNFIKDDTVFLKVSVD-CDGLSE-
A7STV5/269-459              -------------KELIMRFSEKLSEHGTLIEKHEKRLNDLE-KIAHSQLIWRIEDYTRKMKEAKAGNTDTLFSPTFTTSKHGYRLCASVCLNGDG----KGKGTHMSVFISVLKGAFDALLKWPFDYRVTFVLLDQNDDPA-QRKHIRFSIKPNPCADNEPFLGRPRLEKN-ASFGGAKFAKHE-EIVS-RNYIKEDTIFLKISVD-CDGLSE-
C3ZHV2/207-402              ---------SMHNSTRITNHAEKLIDNVVAVEAMKTNVGSMD-KANGCQLLWKITSYNEKLADAKAGRRVSLYSPMFLSSKYGYKMAISICPNGDG----QGKGKFMSLFMCIIKGEFDALLPWPFAQKVIISVIDQCQDPD-ARKNIEYVIKPNTCKDNLQFLGRPIHERN-PSFGTQMFCPLS-HLHR-GDYIRDNTMFISVQVD-NSNMPSI
F6T7F9/289-479              ----------RKQAELLGLQKKQLFEHKQILHDHGKMITKVG-REFDSQLLWKISEWSSKKIEAEAGKRTVLQSPLFYSARFQYKLAVLLLPNGDG----KAKGTHLSIYVRLCKGEYDALLSWPYRLPIEISLIDQSQDPR-ARINHTYSLRPNPCKENKPFLGRPTSESN-PSFGSQTFMPLD-TLNT-RDYIRDDAIFIRVSVL-HDE----
W5LYQ5/333-526              ARLVRQDHQLRELSIRTETQSGQVGELKRQVRSLEESARELEAQQCNGIYVWKVENFSVYQRSQEAGQPVVIHSPGFYTGRPGYKLCLRLHLQTPSA---PRCANYISLFVHTMQGQYDSQLSWPFQGTIRLAILDQA-----DGNHHTEVM---ETKPDLLAFQRPTIQRNPKGFGYVTFMHLS-ALRQ-KDYLRDDTLLVRCEVT--------
H3EZT3/195-386              -------DGVIELKAMLAFMQLNTEKMIRTIGTLETKSSNLE-KMYGAQLVWKIDNIQQRRNEAKSSARPTIFSPPFMSSRHGYKMCLSACLYGDG----PSRGHYFAVYVTILRGEYDALLQWPFVHKVTVSLMDQGAVEK-DRVNIDYVIRPTAGRENKAFLDRPVSERN-ASFGAQKMCLLE-TLN---SYIIDDSIFLKCSVD-TET----
A0A1I7V528/179-367          ---------------TYELMERDMGSFNDRQSRILSAADTCT-EMFGPQLIWKIDKLQQRTNEAKSGADTTIFSTPFMSHRFGYKMMACACLFGDGSSWFSSAGKSISLYVLILKGEFDPTLEWPFNRSIKISLLDQNPRPE-ERVNITYVIDPRKLKANEKFLARPRGERN-AAFGSQSFCSLA-ILQ---NYVKDDTIYVRIDVDRCET----
E3NF06/226-418              -------DEITDLKGTYELMERDMSAFNDRQTRILAAADTCT-EMFGPQLIWKIDKLQQRTNEAKSGADTTIFSNPFMSHRFGYKMMACACLFGDG----SSAGKSISLYVLLLKGEFDPTLEWPFNRTIKISLLDQNPHPE-DRVNITYVIDPRKLKANEKFLARPRGERN-AAFGSQSFCSLA-ILQ---NYVKNDTIYVRIDVDRCET----
A8XZK5/199-390              ------MD--AHLQGTYELMERDMVSFNDRQSRILSAADTCT-EMFGPQLIWKIDKLQQRTNEAKSGADTTIFSNPFMSHRFGYKMMACACLFGDG----TSAGKSISLYVLLLKGEFDPTLEWPFNRTIKISLLDQNPRPE-DRVNITYVIDPRKLKANEKFLARPRGERN-AAFGSQSFCSLA-ILQ---NYVKDDTIYVRIDVDRCET----
A0A261CBA8/226-418          -------DEITDLKGTYELMERDMSSFNDRQTRILAAADTCT-EMFGPQLIWKIDKLQQRTNEAKSGADTTIFSNPFMSHRFGYKMMACACLFGDG----SSAGKSISLYVLLLKGEFDPTLEWPFNRTIKISLLDQNPRPE-DRVNITYVIDPRKLKANEKFLARPRGERN-AAFGSQSFCSLA-ILQ---NYVKDDTIYVRIDVDRCET----
A0A2G5ULK7/227-417          ---------ITDLKGTYELMERDMVSFNDRQSRILSAADTCT-EMFGPQLIWKIDKLQQRTNEAKSGADTTIFSNPFMSHRFGYKMMACACLFGDG----TSAGKSISLYVLLLKGEFDPTLEWPFNRTIKISLLDQNPRPE-DRVNITYVIDPRKLKANEKFLARPRGERN-AAFGSQSFCSLA-ILQ---NYVKDDTIYVRIDVDRCET----
A0A1I7V529/179-363          ---------------TYELMERDMGSFNDRQSRILSAADTCT-EMFGPQLIWKIDKLQQRTNEAKSGADTTIFSTPFMSHRFGYKMMACACLFGDG----SSAGKSISLYVLILKGEFDPTLEWPFNRSIKISLLDQNPRPE-ERVNITYVIDPRKLKANEKFLARPRGERN-AAFGSQSFCSLA-ILQ---NYVKDDTIYVRIDVDRCET----
A0A260YWG4/192-384          -------DEITDLKGTYELMERDMSSFNDRQTRILAAADTCT-EMFGPQLIWKIDKLQQRTNEAKSGADTTIFSNPFMSHRFGYKMMACACLFGDG----SSAGKSISLYVLLLKGEFDPTLEWPFNRTIKISLLDQNPRPE-DRVNITYVIDPRKLKANEKFLARPRGERN-AAFGSQSFCSLA-ILQ---NYVKNDTIYVRIDVDRCET----
#=GC scorecons              00000000012223232333333423433333343334334404444465697755445433575473335659448364648976343456475600003446445866635459569449499833374557689423540473664546253337474356478435790548944384464037410148556767565547502320000
#=GC scorecons_70           ___________________________________________________***_________*__*______*__*_____****_____*_*_*_______*___****____*_**__*_***___*___****_______*______*_____*_*___*_**___**___**___*______*_____*__**_*_____*_________
#=GC scorecons_80           ___________________________________________________***_________*__*______*__*_____***________*_____________*_______*__*__*_***___*___*_**_______*______________*_____**____*___**___*______*_____*___*_______*_________
#=GC scorecons_90           ___________________________________________________*_____________________*__*_____**_______________________*_______*__*__*_***_________**_____________________________*____*___**___*____________*_____________________
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