# STOCKHOLM 1.0
#=GF ID 2.60.120.960/FF/000002
#=GF DE Spike glycoprotein
#=GF AC 2.60.120.960/FF/000002
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 65.383
#=GS 3r4dD00/1-254      AC Q9J3E7
#=GS 3r4dD00/1-254      OS Murine hepatitis virus
#=GS 3r4dD00/1-254      DE Spike glycoprotein
#=GS 3r4dD00/1-254      DR CATH; 3r4d; D:15-268; 
#=GS 3r4dD00/1-254      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS P36334/15-306      AC P36334
#=GS P36334/15-306      OS Human coronavirus OC43
#=GS P36334/15-306      DE Spike glycoprotein
#=GS P36334/15-306      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Betacoronavirus 1; 
#=GS P36334/15-306      DR GO; GO:0009405; GO:0016021; GO:0019031; GO:0019064; GO:0030246; GO:0046789; 
#=GS P11224/15-268      AC P11224
#=GS P11224/15-268      OS Murine hepatitis virus strain A59
#=GS P11224/15-268      DE Spike glycoprotein
#=GS P11224/15-268      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS P11224/15-268      DR GO; GO:0042802; GO:0044177; 
#=GS Q0ZME7/14-299      AC Q0ZME7
#=GS Q0ZME7/14-299      OS Human coronavirus HKU1 (isolate N5)
#=GS Q0ZME7/14-299      DE Spike glycoprotein
#=GS Q0ZME7/14-299      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Human coronavirus HKU1; 
#=GS Q0ZME7/14-299      DR GO; GO:0042802; 
#=GS 3r4dB00/1-254      AC Q9J3E7
#=GS 3r4dB00/1-254      OS Murine hepatitis virus
#=GS 3r4dB00/1-254      DE Spike glycoprotein
#=GS 3r4dB00/1-254      DR CATH; 3r4d; B:15-268; 
#=GS 3r4dB00/1-254      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS 6qfyB00/1-288      AC A0A1Z2WUW0
#=GS 6qfyB00/1-288      OS Porcine hemagglutinating encephalomyelitis virus
#=GS 6qfyB00/1-288      DE Spike glycoprotein
#=GS 6qfyB00/1-288      DR CATH; 6qfy; B:15-298; 
#=GS 6qfyB00/1-288      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Betacoronavirus 1; 
#=GS 6qfyA00/1-288      AC A0A1Z2WUW0
#=GS 6qfyA00/1-288      OS Porcine hemagglutinating encephalomyelitis virus
#=GS 6qfyA00/1-288      DE Spike glycoprotein
#=GS 6qfyA00/1-288      DR CATH; 6qfy; A:15-302; 
#=GS 6qfyA00/1-288      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Betacoronavirus 1; 
#=GS 4h14A00/1-290      AC Q1HLC5
#=GS 4h14A00/1-290      OS Bovine coronavirus
#=GS 4h14A00/1-290      DE Spike glycoprotein
#=GS 4h14A00/1-290      DR CATH; 4h14; A:15-301; 
#=GS 4h14A00/1-290      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Betacoronavirus 1; 
#=GS A0A2H4ZBM5/15-314  AC A0A2H4ZBM5
#=GS A0A2H4ZBM5/15-314  OS unidentified human coronavirus
#=GS A0A2H4ZBM5/15-314  DE Spike glycprotein
#=GS A0A2H4ZBM5/15-314  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Coronavirinae; unidentified human coronavirus; 
#=GS Q9J3E7/15-268      AC Q9J3E7
#=GS Q9J3E7/15-268      OS Murine hepatitis virus
#=GS Q9J3E7/15-268      DE Spike glycoprotein
#=GS Q9J3E7/15-268      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS Q98339/15-268      AC Q98339
#=GS Q98339/15-268      OS Murine hepatitis virus
#=GS Q98339/15-268      DE Spike protein
#=GS Q98339/15-268      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS G5CJB1/15-315      AC G5CJB1
#=GS G5CJB1/15-315      OS Human coronavirus OC43
#=GS G5CJB1/15-315      DE Spike glycoprotein
#=GS G5CJB1/15-315      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Betacoronavirus 1; 
#=GS I4DEX2/15-315      AC I4DEX2
#=GS I4DEX2/15-315      OS Human coronavirus OC43
#=GS I4DEX2/15-315      DE Spike glycoprotein
#=GS I4DEX2/15-315      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Betacoronavirus 1; 
#=GS I4DEX4/15-315      AC I4DEX4
#=GS I4DEX4/15-315      OS Human coronavirus OC43
#=GS I4DEX4/15-315      DE Spike glycoprotein
#=GS I4DEX4/15-315      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Betacoronavirus 1; 
#=GS I4DEX1/15-315      AC I4DEX1
#=GS I4DEX1/15-315      OS Human coronavirus OC43
#=GS I4DEX1/15-315      DE Spike glycoprotein
#=GS I4DEX1/15-315      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Betacoronavirus 1; 
#=GS I4DEX0/15-315      AC I4DEX0
#=GS I4DEX0/15-315      OS Human coronavirus OC43
#=GS I4DEX0/15-315      DE Spike glycoprotein
#=GS I4DEX0/15-315      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Betacoronavirus 1; 
#=GS T1PZ49/15-315      AC T1PZ49
#=GS T1PZ49/15-315      OS Human coronavirus OC43
#=GS T1PZ49/15-315      DE Spike protein
#=GS T1PZ49/15-315      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Betacoronavirus 1; 
#=GS A0A3G2KXL1/14-299  AC A0A3G2KXL1
#=GS A0A3G2KXL1/14-299  OS Human coronavirus HKU1
#=GS A0A3G2KXL1/14-299  DE Spike glycoprotein
#=GS A0A3G2KXL1/14-299  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Human coronavirus HKU1; 
#=GS Q14EB0/14-299      AC Q14EB0
#=GS Q14EB0/14-299      OS Human coronavirus HKU1 (isolate N2)
#=GS Q14EB0/14-299      DE Spike glycoprotein
#=GS Q14EB0/14-299      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Human coronavirus HKU1; 
#=GF SQ 19
3r4dD00/1-254              YIGDFRCIQ----LVNSNGANVSAPSISTETVEVSQGLGTYYVLDRVYLNATLLLTGYYPVDGSKFRNLALTGTNSVSLSWFQPPYLSQFNDGIFAKVQNLKTSTPSGATAYFPTIVIGSLFGYTSYTVVIEPY------------NGVIMASVCQYTICQLPYTDCKPNTNGNKLIGFWHTDVKPPICVLKRNFTLNVNADAFYFHFYQHGGTFYAYYADKPSATTFLFSVYIGDILTQYYVLPFICNPTAGST--FAPRYWVTPLVKRQY----------------------------------
P36334/15-306              VIGDLKCT-----SDNINDKDTGPPPISTDTVDVTNGLGTYYVLDRVYLNTTLFLNGYYPTSGSTYRNMALKGSVLLSRLWFKPPFLSDFINGIFAKVKNTKVIKDRVMYSEFPAITIGSTFVNTSYSVVVQPRTINSTQDGDNKLQGLLEVSVCQYNMCEYPQTICHPNL-GNHRKELWHLDTGVVSCLYKRNFTYDVNADYLYFHFYQEGGTFYAYFTDTGVVTKFLFNVYLGMALSHYYVMPLTCNSK------LTLEYWVTPLTSRQYLLAFNQDGIIFNAEDCMSDFMSEIKCKTQSIA--
P11224/15-268              YIGDFRCIQ----LVNSNGANVSAPSISTETVEVSQGLGTYYVLDRVYLNATLLLTGYYPVDGSKFRNLALRGTNSVSLSWFQPPYLNQFNDGIFAKVQNLKTSTPSGATAYFPTIVIGSLFGYTSYTVVIEPY------------NGVIMASVCQYTICQLPYTDCKPNTNGNKLIGFWHTDVKPPICVLKRNFTLNVNADAFYFHFYQHGGTFYAYYADKPSATTFLFSVYIGDILTQYYVLPFICNPTAGST--FAPRYWVTPLVKRQY----------------------------------
Q0ZME7/14-299              VIGDFNCT-----NSFINDYNKTIPRISEDVVDVSLGLGTYYVLNRVYLNTTLLFTGYFPKSGANFRDLALKGSIYLSTLWYKPPFLSDFNNGIFSKVKNTKLYVNNTLYSEFSTIVIGSVFVNTSYTIVVQPH------------NGILEITACQYTMCEYPHTVCKSK--GSIRNESWHIDSSEPLCLFKKNFTYNVSADWLYFHFYQERGVFYAYYADVGMPTTFLFSLYLGTILSHYYVMPLTCNAISSNTDNETLEYWVTPLSRRQYLLNFDEHGVITNAVDCSSSFLSEIQCKTQSFAP-
3r4dB00/1-254              YIGDFRCIQ----LVNSNGANVSAPSISTETVEVSQGLGTYYVLDRVYLNATLLLTGYYPVDGSKFRNLALTGTNSVSLSWFQPPYLSQFNDGIFAKVQNLKTSTPSGATAYFPTIVIGSLFGYTSYTVVIEPY------------NGVIMASVCQYTICQLPYTDCKPNTNGNKLIGFWHTDVKPPICVLKRNFTLNVNADAFYFHFYQHGGTFYAYYADKPSATTFLFSVYIGDILTQYYVLPFICNPTAGST--FAPRYWVTPLVKRQY----------------------------------
6qfyB00/1-288              VIGDLKCN-----TSSINDVDTGVPSISSEVVDVTNGLGTFYVLDRVYLNTTLLLNGYYPISGATFRNMALKGTRLLSTLWFKSPFLSPFNDGIFAKVKNSRFSKDGVIYSEFPAITIGSTFVNSSHSIVVKPHTSFIN----GNLQGLLQISVCQYTMCEYPHTICHPNL-GNQRIELWHYDTDVVSCLYKRNFTYDVNADYLYFHFYQEGGTFYAYFTDTGFVTKFLFKLYLGTVLSHYYVMPLTCDSA------LSLEYWVTPLTTRQFLLAFDQDGVLYHAVDCASDFMSEIMCKTSSDP--
6qfyA00/1-288              VIGDLKCN-----TSSINDVDTGVPSISSEVVDVTNGLGTFYVLDRVYLNTTLLLNGYYPISGATFRNMALKGTRLLSTLWFKSPFLSPFNDGIFAKVKNSRFSKDGVIYSEFPAITIGSTFVNSSHSIVVKPHTSFIN----GNLQGLLQISVCQYTMCEYPHTICHPNL-GNQRIELWHYDTDVVSCLYKRNFTYDVNADYLYFHFYQEGGTFYAYFTDTGFVTKFLFKLYLGTVLSHYYVMPLTCDSA------LSLEYWVTPLTTRQFLLAFDQDGVLYHAVDCASDFMSEIMCKTSSDP--
4h14A00/1-290              VIGDLKCT-----TVSINDVDTGAPSISTDTVDVTNGLGTYYVLDRVYLNTTLLLNGYYPTSGSTYRNMALKGTLLLSRLWFKPPFLSDFINGIFAKVKNTKVIKKGVMYSEFPAITIGSTFVNTSYSVVVQPHTTNLD----NKLQGLLEISVCQYTMCEYPHTICHPKL-GNKRVELWHWDTGVVSCLYKRNFTYDVNADYLYFHFYQEGGTFYAYFTDTGVVTKFLFNVYLGTVLSHYYVLPLTCSSA------MTLEYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKTHHHHHH
A0A2H4ZBM5/15-314          VIGDLKCPLDSR-TGSLNNIDTGPPSISTATVDVTNGLGTYYVLDRVYLNTTLFLNGYYPTSGSTYRNMALKGTDKLSTLWFKPPFLSDFINGIFAKVKNTKVFKDGVMYSEFPAITIGSTFVNTSYSVVVQPRTINSTQDGVNKLQGLLEVSVCQYNMCEYPHTICHPNL-GNHFKELWHMDTGVVSCLYKRNFTYDVNATYLYFHFYQEGGTFYAYFTDTGVVTKFLFNVYLGMALSHYYVMPLTCISRRNIG--FTLEYWVTPLTSRQYLLAFNQDGIIFNAVDCMSDFMSEIKCKTQSIA--
Q9J3E7/15-268              YIGDFRCIQ----LVNSNGANVSAPSISTETVEVSQGLGTYYVLDRVYLNATLLLTGYYPVDGSKFRNLALTGTNSVSLSWFQPPYLSQFNDGIFAKVQNLKTSTPSGATAYFPTIVIGSLFGYTSYTVVIEPY------------NGVIMASVCQYTICQLPYTDCKPNTNGNKLIGFWHTDVKPPICVLKRNFTLNVNADAFYFHFYQHGGTFYAYYADKPSATTFLFSVYIGDILTQYYVLPFICNPTAGST--FAPRYWVTPLVKRQY----------------------------------
Q98339/15-268              YIGDFRCIQ----LVNSNGANVSAPSISTETVDVSQGLGTYYVLDRVYLNATLLLTGYYPVDGSKFRNLALTGTNSVSLSWFQPPYLSQFNDGIFAKVQNLKTSTPSGATAYFPTIVIGSLFGYTSYTVVIEPY------------NGVIMASVCQYTICQLPYTDCKPNTNGNKLIGFWHTDVKPPICVLKRNFTLNVNADAFYFHFYQHGGTFYAYYADKPSATTFLFSVYIGDILTQYYVLPFICNPTAGST--FRPRYWVTPLVKRQY----------------------------------
G5CJB1/15-315              VIGDLNCPLDTRLKGSFNNRDTGPPSISTDTVDVTNGLGTYYVLDRVYLNTTLFLNGYYPTSGSTYRNMALKGTDKLSTLWFKPPFLSDFINGIFAKVKNTKVFKDGVMYSEFPAITIGSTFVNTSYSVVVQPRTINSTQDGVNKLQGLLEVSVCQYNMCEYPHTICHPKL-GNHFKELWHLDTGVVSCLYKRNFTYDVNATYLYFHFYQEGGTFYAYFTDTGFVTKFLFNVYLGMALSHYYVMPLTCISRLDIG--FTLEYWVTPLTSRQYLLAFNQDGIIFNAVDCMSDFMSEIKCKTQSIA--
I4DEX2/15-315              VIGDLNCPLDPRLKGSFNNRDTGPPSISTDTVDVTNGLGTYYVLDRVYLNTTLFLNGYYPTSGSTYRNMALKGTDLLSTLWFKPPFLSDFINGIFAKVKNTKVFKDGVMYSEFPAITIGSTFVNTSYSVVVQPRTINSTQDGVNKLQGLLEVSVCQYNMCEHPHTICHPNL-GNHFKELWHSDTGVVSCLYKRNFTYDVNATYLYFHFYQEGGTFYAYFTDTGFVTKFLFNVYLGMALSHYYVMPLTCISRRDIG--FTLEYWVTPLTPRQYLLAFNQDGIIFNAVDCMSDFMSEIKCKTQSIA--
I4DEX4/15-315              VIGDLNCPLDPRLKGSFNNRDTGPPSISTDTVDVTNGLGTYYVLDRVYLNTTLFLNGYYPTSGSTYRNMALKGTDLLSTLWFKPPFLSDFINGIFAKVKNTKVFKDGVMYSEFPAITIGSTFVNTSYSVVVQPRTINSTQDGVNKLQGLLEVSVCQYNMCEHPHTICHPNL-GNHFKELWHSDTGVVSCLYKRNFTYDVNATYLYFHFYQEGGTFYAYFTDTGFVTKFLFNVYLGMALSHYYVMPLTCISRRDIG--FTLEYWVTPLTPRQYLLAFNQDGIIFNAVDCMSDFMSEIKCKTQSIA--
I4DEX1/15-315              VIGDLNCPLDPRLKGSFNNRDTGPPSISTDTVDVTNGLGTYYVLDRVYLNTTLFLNGYYPTSGSTYRNMALKGTDLLSTLWFKPPFLSDFINGIFAKVKNTKVFKDGVMYSEFPAITIGSTFVNTSYSVVVQPRTINSTQDGVNKLQGLLEVSVCQYNMCEHPHTICHPNL-GNHFKELWHSDTGVVSCLYKRNFTYDVNATYLYFHFYQEGGTFYAYFTDTGFVTKFLFNVYLGMALSHYYVMPLTCISRRDIG--FTLEYWVTPLTPRQYLLAFNQDGIIFNAVDCMSDFMSEIKCKTQSIA--
I4DEX0/15-315              VIGDLNCPLDPRLKGSFNNRDTGPPSISTDTVDVTNGLGTYYVLDRVYLNTTLFLNGYYPTSGSTYRNMALKGTDLLSTLWFKPPFLSDFINGIFAKVKNTKVFKDGVMYSEFPAITIGSTFVNTSYSVVVQPRTINSTQDGVNKLQGLLEVSVCQYNMCEHPHTICHPNL-GNHFKELWHSDTGVVSCLYKRNFTYDVNATYLYFHFYQEGGTFYAYFTDTGFVTKFLFNVYLGMALSHYYVMPLTCISRRDIG--FTLEYWVTPLTPRQYLLAFNQDGIIFNAVDCMSDFMSEIKCKTQSIA--
T1PZ49/15-315              VIGDLNCPLDPRLKGSFNNRDTGPPSISTDTVDVTNGLGTYYVLDRVYLNTTLFLNGYYPTSGSTYRNMALKGTDLLSTLWFKPPFLSDFINGIFAKVKNTKVFKDGVMYSEFPAITIGSTFVNTSYSVVVQPRTINSTQDGVNKLQGLLEVSVCQYNMCEYPHTICHPKL-GNHFKELWHSDTGVVSCLYKRNFTYDVNATYLYFHFYQEGGTFYAYFTDTGFVTKFLFNVYLGMALSHYYVMPLTCISRLDIG--FTLEYWVTPLTPRQYLLAFNQDGIIFNAVDCMSDFMSEIKCKTQSIA--
A0A3G2KXL1/14-299          VIGDFNCT-----NSFINDYNKTIPRISEDVVDVSLGLGTYYVLNRVYLNTTLLFTGYFPKSGANFRDLALKGSKYLSTLWYKPPFLSDFNNGIFSKVKNTKLYVNNTLYSEFSTIVIGSVFVNTSYTIVVQPH------------NGILEITACQYTMCEYPHTVCKSK--GSIRNESWHIDSSEPLCLFKKNFTYNVSADWLYFHFYQERGVFYAYYADVGMPTTFLFSLYLGTILSHYYVMPLTCKAISSNTDNETLEYWVTPLSRRQYLLNFDEHGVITNAVDCSSSFLSEIQCKTQSFAP-
Q14EB0/14-299              VIGDFNCT-----NSFINDYNKTIPRISEDVVDVSLGLGTYYVLNRVYLNTTLLFTGYFPKSGANFRDLALKGSKYLSTLWYKPPFLSDFNNGIFSKVKNTKLYVNNTLYSEFSTIVIGSVFVNTSYTIVVQPH------------NGILEITACQYTMCEYPHTVCKSK--GSIRNESWHIDSSEPLCLFKKNFTYNVSADWLYFHFYQERGVFYAYYADVGMPTTFLFSLYLGTILSHYYVMPLTCKAISSNTDNETLEYWVTPLSRRQYLLNFDEHGVITNAVDCSSSFLSEIQCKTQSFAP-
#=GC scorecons             599965941000034449536454969966697964999989997999996996769989469657976995973369559867979859569997996958444454456597695999595579867976952111100001125966457799967965969496763097444659939544549659799956979646999999679799997694545959995696945967999696694542323004566999999548983323232333233333132333332333231200
#=GC scorecons_70          _****_*__________*__*___****_*****__*******************_****__**_******_**__**__********_*_*********_*________*_****_***_*__***_***_*______________*_*__*********_***_*_**__**___*_**_*_____**_*****_****__*******_**********____*_***_****__***********_____________******__***__________________________________
#=GC scorecons_80          _***__*__________*______*_**___***__**************_**_*_****__*__***_**_*____*__**_*****_*__******_*_*__________**_*_***_*__***_***_*______________*____*****__*__*_*_*_*___**_____**_*_____*__*****__***___******__*_*****_*____*_***__*_*__*__***_*__*_____________******__***__________________________________
#=GC scorecons_90          _***__*__________*______*_**___*_*__********_*****_**___**_*__*___*__**_*____*__*___*_**_*__***_**_*_*__________*__*_***_*___**__*__*______________*______***__*__*_*_*_____*______**_*_____*__*_***__*_*___******__*_****__*____*_***__*_*__*__***_*__*_____________******__***__________________________________
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