# STOCKHOLM 1.0
#=GF ID 2.60.120.920/FF/000076
#=GF DE ATP-dependent RNA helicase DDX1
#=GF AC 2.60.120.920/FF/000076
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 84.863
#=GS Q9VNV3/88-268       AC Q9VNV3
#=GS Q9VNV3/88-268       OS Drosophila melanogaster
#=GS Q9VNV3/88-268       DE ATP-dependent RNA helicase Ddx1
#=GS Q9VNV3/88-268       DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila melanogaster; 
#=GS Q9VNV3/88-268       DR GO; GO:0001700; GO:0003682; GO:0003712; GO:0004386; GO:0004518; GO:0005634; GO:0006302; GO:0007283; GO:0008143; GO:0032508; GO:0033677; GO:0042254; GO:0048477; 
#=GS Q9VNV3/88-268       DR EC; 3.6.4.13; 
#=GS Q55CP6/99-292       AC Q55CP6
#=GS Q55CP6/99-292       OS Dictyostelium discoideum
#=GS Q55CP6/99-292       DE Probable ATP-dependent RNA helicase ddx1
#=GS Q55CP6/99-292       DR ORG; Eukaryota; Dictyosteliales; Dictyosteliaceae; Dictyostelium; Dictyostelium discoideum; 
#=GS Q55CP6/99-292       DR GO; GO:0003682; GO:0003712; GO:0004386; GO:0004518; GO:0005634; GO:0006302; GO:0008143; GO:0032508; GO:0033677; 
#=GS Q55CP6/99-292       DR EC; 3.6.4.13; 
#=GS Q9N341/87-273       AC Q9N341
#=GS Q9N341/87-273       OS Caenorhabditis elegans
#=GS Q9N341/87-273       DE Uncharacterized protein
#=GS Q9N341/87-273       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS A0A2K3DY65/104-283  AC A0A2K3DY65
#=GS A0A2K3DY65/104-283  OS Chlamydomonas reinhardtii
#=GS A0A2K3DY65/104-283  DE Uncharacterized protein
#=GS A0A2K3DY65/104-283  DR ORG; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas; Chlamydomonas reinhardtii; 
#=GS A8IRS1/104-283      AC A8IRS1
#=GS A8IRS1/104-283      OS Chlamydomonas reinhardtii
#=GS A8IRS1/104-283      DE Predicted protein
#=GS A8IRS1/104-283      DR ORG; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas; Chlamydomonas reinhardtii; 
#=GS E9GIE4/92-262       AC E9GIE4
#=GS E9GIE4/92-262       OS Daphnia pulex
#=GS E9GIE4/92-262       DE Uncharacterized protein
#=GS E9GIE4/92-262       DR ORG; Eukaryota; Metazoa; Arthropoda; Crustacea; Branchiopoda; Phyllopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia; Daphnia pulex; 
#=GS T1EE26/89-282       AC T1EE26
#=GS T1EE26/89-282       OS Helobdella robusta
#=GS T1EE26/89-282       DE Uncharacterized protein
#=GS T1EE26/89-282       DR ORG; Eukaryota; Metazoa; Annelida; Clitellata; Hirudinea; Hirudinida; Glossiphoniiformes; Glossiphoniidae; Helobdella; Helobdella robusta; 
#=GS A7RMK9/87-295       AC A7RMK9
#=GS A7RMK9/87-295       OS Nematostella vectensis
#=GS A7RMK9/87-295       DE Predicted protein
#=GS A7RMK9/87-295       DR ORG; Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella; Nematostella vectensis; 
#=GS B3RV64/88-282       AC B3RV64
#=GS B3RV64/88-282       OS Trichoplax adhaerens
#=GS B3RV64/88-282       DE Uncharacterized protein
#=GS B3RV64/88-282       DR ORG; Eukaryota; Metazoa; Placozoa; Trichoplacidae; Trichoplax; Trichoplax adhaerens; 
#=GS D6WQ19/85-280       AC D6WQ19
#=GS D6WQ19/85-280       OS Tribolium castaneum
#=GS D6WQ19/85-280       DE ATP-dependent RNA helicase Ddx1-like Protein
#=GS D6WQ19/85-280       DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga; Cucujiformia; Tenebrionoidea; Tenebrionidae; Tribolium; Tribolium castaneum; 
#=GS F0ZQN9/92-283       AC F0ZQN9
#=GS F0ZQN9/92-283       OS Dictyostelium purpureum
#=GS F0ZQN9/92-283       DE Uncharacterized protein
#=GS F0ZQN9/92-283       DR ORG; Eukaryota; Dictyosteliales; Dictyosteliaceae; Dictyostelium; Dictyostelium purpureum; 
#=GS A0A369SBI9/109-302  AC A0A369SBI9
#=GS A0A369SBI9/109-302  OS Trichoplax sp. H2
#=GS A0A369SBI9/109-302  DE ATP-dependent RNA helicase DDX1
#=GS A0A369SBI9/109-302  DR ORG; Eukaryota; Metazoa; Placozoa; Trichoplacidae; Trichoplax; Trichoplax sp. H2; 
#=GS A8XIW7/89-256       AC A8XIW7
#=GS A8XIW7/89-256       OS Caenorhabditis briggsae
#=GS A8XIW7/89-256       DE Protein CBG13978
#=GS A8XIW7/89-256       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS B3MAL1/90-279       AC B3MAL1
#=GS B3MAL1/90-279       OS Drosophila ananassae
#=GS B3MAL1/90-279       DE Uncharacterized protein
#=GS B3MAL1/90-279       DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; ananassae subgroup; Drosophila ananassae; 
#=GS A0A0J9S022/88-268   AC A0A0J9S022
#=GS A0A0J9S022/88-268   OS Drosophila simulans
#=GS A0A0J9S022/88-268   DE Uncharacterized protein
#=GS A0A0J9S022/88-268   DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila simulans; 
#=GF SQ 15
Q9VNV3/88-268               ---PWTMSFFDRGNALAVT-PDGLRCQSREFKEWHGCRATTGVR--------------GKGKFYFEATVTDEGLCRVGWSTQQANLDLGTCRMGFGFGGTGKKSNNRQFDDYGEAFGKADVIGCLLDLKNQ--EVSFTKNGQNLGVAFRLPDNLAK--ETFYPAVVLKNAEMQFNF--GKTDFKYAPGNGFVGACQAGPEHSKAN--------------------
Q55CP6/99-292               --DTIELDQIDRDKNMAV---DGLICQSRS-SDWCGIKATKGI---------------SSGKFYYESIVRDEGLCRIGFALKKSSRNIGTDKFSWGYGGTGKKSHESKFIDYGKPFGNNDVIGCYINFDEE--IIGFTKNGQDFGEAFTFNS--KA--GIFYPALVLKNAEMEFNF--GSKPMKHDL-KGYKPINQAELLIDQQTSTQIDNSKNNNN-NNNKKGS
Q9N341/87-273               ----FQLNREDRDVSLQID-KTGLNCESRVAKEWHGARATAGLY--------------GNGKYYYEVTVTRDGLCRVGWATLSGSLKIGTDFESFGYGGTGKKSFGKKFDDYGTSFTTNDVLGCFLDLDEL--KIWWSKNGVQFPVAYQIDKKFKTAATCLYPAILCQNSGLGVNF-GGSAAFKYPPGTQYVAVAQAEDGNLKWWSAAE----------------
A0A2K3DY65/104-283          --------SEDRELHVAVS-PDGLSAQSRSEKAWGGVRGSVGVF------------ASCGGKVYYEVTVTDEGLCRVGWSCPTAALELGTDRLGWGFGGTGKKSHNRQFDSYGEPFALNDVVGCLLDCGEAGGSVAFTKNGRPLGEAFKLPDNLRN--QVLHPAITLKNAEVALNF--GATPLAFPPPPGYIPLAQAPAAWVAAG--------------------
A8IRS1/104-283              --------SEDRELHVAVS-PDGLSAQSRSEKAWGGVRGSVGVF------------ASCGGKVYYEVTVTDEGLCRVGWSCPTAALELGTDRLGWGFGGTGKKSHNRQFDSYGEPFALNDVVGCLLDCGEAGGSVAFTKNGRPLGEAFKLPDNLRN--QVLHPAITLKNAEVALNF--GATPLAFPPPPGYIPLAQAPAAWVAAG--------------------
E9GIE4/92-262               ---KWILSTYDRTPAMAVN-PEGTLCQSRD-AAWSGIRATQGVV--------------SKGKYFYEATVSDEGLCRVGWSLNEANLDLGTDRYGYGFGGTGKKSNNRQFDDYGTAYGLNDVIGCALDLDNR--VISFFKNGVDLGKAFDINPEFKN--KALFPAVALKNAELEFNF--GQKPFKFAPPKNFVAVCQ-----------------------------
T1EE26/89-282               --TKWKMNVFDRTPAMAIDTEEGLVCQSRDFQGWHGTRSNKGVS--------------IKGKYFYEATVTDEGLCRVGWSTMNAFLDLGTDREGFGYGGTGKKSFGKQFDSYGESFGLSDVIGCYLDLDNF--TIKWSKNGVDFGKAYDIPPNLRH--SVFYAAVCLKNAEMKFNF--GGSRFSHLPKEGFVSLMDAPRDCVVNS-----TASGGSK----EGSV
A7RMK9/87-295               --STFKMNPFDRGDTLTID-KEGYLCQSRDFYKWQGCRSTLGVKKVYLYSPNVLSLANNSGKYYYEATVTDEGLCRVGWSTAHATLDLGTDEEGFGFGGTGKKSYNRQFDTYGEPFGINDTIGCYINLDNG--TVKYSKNGVDFGKAFDIPQALLG--KTFFAAVVLKNAEMKFNF--GDSSFQCPPKGDYIPLSKAPKDVTAAG---GDTASIQSK----PGKF
B3RV64/88-282               IDTKVKLNPFDRSDQLAID-KDGLICQGREHFQWLGCRSNIGVV---------------KGKFYYEATVTDEGLCRVGWSTDIASLDLGTDNNGFGFGGTGKKSYARQFDGYGEPFGHKDVIGCMLDLDNY--EIRFSKNGVDFGRAFEIPQKLRN--SPFFAAVVLKNAEMQFNF--GDDAFTFSPPQGFRTLSKSTTDERYHNIKGPNSSSKESR--------
D6WQ19/85-280               --KPWTMSMIDRGTALAVA-PCGLRVQSREQREWHGGRCTRGVQ--------------GSGKYAFEATVTDEGLCRVGWSTLQAKLDLGTCRNGFGFGGTGKKSNNKQFDDYGEPFGKNDVITCLLDLDNG--QIKFCKNGTDLGNAFTINKQMLN--NAFFPAVVLKNAEMAFNF--GEEAFKYPLPQGYVPIKQAPSEKIVVNSNSGEAADDNSV------KI
F0ZQN9/92-283               -----EWDQLNRDRELAV---DGLVCQARS-AAWNGIRATKGI---------------SSGKFYYEAIIRDEGLCRVGWALSKATRNIGTDKFSWGYGGTGKKSHQGTFADYGKPFGNNDCIGCYINFDDE--VMGYTKNGEDFGEAFTFNS--KA--GIFYPALVLKNAEIAFNF--GKDPMKHQL-KGYKPLIEAELLADQASAPAPEPSNNKNIKKSNKKEK
A0A369SBI9/109-302          -DTKVKLNPFDRSDQLAID-KDGLICQGREHFQWLGCRSNIGVV---------------KGKFYYEATVTDEGLCRVGWSTDIASLDLGTDNNGFGFGGTGKKSYARQFDGYGEPFGHKDVIGCMLDLDNY--EIRFSKNGVDFGRAFEIPQKLRN--SPFFAAVVLKNAEMQFNF--GDDAFTFSPPQGFRTLSKSTTDERYHNIKGPNSSSKESR--------
A8XIW7/89-256               --------SEDRDRSLQID-KTGLNCECRLGKEWHGARANVGLY--------------GGGKYYYEVTITRDGLCRIGWATLAGSLKIGTDFESFGYGGTGKKSFGKKFDDYGTSFTTNDVLGCFLDLDNL--KIWWSKNGQHFPTAYHIDKKFQSPATCLFPAVLCQNSGLAVNFGGGSAPFQYPPGPDTVG--------------------------------
B3MAL1/90-279               ---PWTMSFFDRGNALAVT-PDGLRCQSREFKEWHGCRATTGVQ--------------GKGRFYFEATVTDEGLCRVGWSTQQANLDLGTCRFGFGFGGTGKKSNNRQFDDYGESFGKADVIGCLLDLQRL--EVSFTKNGQSLGVAFRLPENLAK--ETFYPAVVLKNAEMQFNF--GKTDFKYAPGGGFDAVCKAGAEHIRSNPLASPSSSS-----------
A0A0J9S022/88-268           ---PWTMSFFDRGNALAVT-PDGLRCQSREFKEWHGCRATTGVR--------------GKAKFYFEATVTDEGLCRVGWSTQQANLDLGTCRMGFGFGGTGKKSNNRQFDDYGEAFGKADVIGCLLDLQRQ--EVSFTKNGQNLGVAFRLPDNLAK--ETFYPAVVLKNAEMQFNF--GKTDFKYAPGNGFIGACQAGPEHSMAN--------------------
#=GC scorecons              000112332389423667303597367694134939385539610000000000000034886779677678999979865236465699542659799999994456965995586359768947766520036365999346739735433444003366696567977646990093346454633664442452221222300000111001000000000
#=GC scorecons_70           __________**___***____**_****____*_*_*___**_________________**_***_*************___*_*_***___*_*********___***_**__*___*****_**_______*___***__**_**____________*****_*****__***__*___*___*___*__________________________________
#=GC scorecons_80           __________**__________**__*_*____*_*_*___*__________________**_***_**__********_________**_____*********____*__**__*___*__**_**___________***_____**_______________*___****___**__*______________________________________________
#=GC scorecons_90           __________**__________*_____*____*_*_*___*__________________**___*______****_*__________**_____*_*******____*__**__*___*__**______________***_____*________________*____*_____**__*______________________________________________
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