# STOCKHOLM 1.0 #=GF ID 2.40.50.40/FF/000038 #=GF DE Chromo domain-containing protein 1 #=GF AC 2.40.50.40/FF/000038 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 90.675 #=GS 3mwyW01/36-146 AC P32657 #=GS 3mwyW01/36-146 OS Saccharomyces cerevisiae S288C #=GS 3mwyW01/36-146 DE Chromo domain-containing protein 1 #=GS 3mwyW01/36-146 DR CATH; 3mwy; W:175-285; #=GS 3mwyW01/36-146 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS 3mwyW01/36-146 DR GO; GO:0000124; GO:0000182; GO:0000790; GO:0001178; GO:0003677; GO:0005739; GO:0006363; GO:0006368; GO:0006369; GO:0008094; GO:0016584; GO:0030874; GO:0031490; GO:0034728; GO:0035064; GO:0042766; GO:0043044; GO:0044212; GO:0046695; GO:0060303; GO:0070615; GO:0071441; GO:0071894; GO:1900050; GO:1902275; GO:2000104; GO:2000616; #=GS 2dy7A00/1-81 AC P32657 #=GS 2dy7A00/1-81 OS Saccharomyces cerevisiae S288C #=GS 2dy7A00/1-81 DE Chromo domain-containing protein 1 #=GS 2dy7A00/1-81 DR CATH; 2dy7; A:172-252; #=GS 2dy7A00/1-81 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS 2dy7A00/1-81 DR GO; GO:0000124; GO:0000182; GO:0000790; GO:0001178; GO:0003677; GO:0005739; GO:0006363; GO:0006368; GO:0006369; GO:0008094; GO:0016584; GO:0030874; GO:0031490; GO:0034728; GO:0035064; GO:0042766; GO:0043044; GO:0044212; GO:0046695; GO:0060303; GO:0070615; GO:0071441; GO:0071894; GO:1900050; GO:1902275; GO:2000104; GO:2000616; #=GS Q9US25/193-301 AC Q9US25 #=GS Q9US25/193-301 OS Schizosaccharomyces pombe 972h- #=GS Q9US25/193-301 DE Chromodomain helicase hrp1 #=GS Q9US25/193-301 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces; Schizosaccharomyces pombe; #=GS Q9US25/193-301 DR GO; GO:0000780; GO:0000790; GO:0003677; GO:0005515; GO:0005634; GO:0006357; GO:0006369; GO:0017116; GO:0030466; GO:0030702; GO:0035067; GO:0036121; GO:0043044; GO:0043486; GO:0045944; GO:0048096; GO:0060303; #=GS O14139/180-283 AC O14139 #=GS O14139/180-283 OS Schizosaccharomyces pombe 972h- #=GS O14139/180-283 DE Chromodomain helicase hrp3 #=GS O14139/180-283 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces; Schizosaccharomyces pombe; #=GS O14139/180-283 DR GO; GO:0000790; GO:0003677; GO:0005515; GO:0005524; GO:0005634; GO:0006338; GO:0008094; GO:0030466; GO:0031934; GO:0034728; GO:0060303; GO:0070615; #=GS F4IV99/408-532 AC F4IV99 #=GS F4IV99/408-532 OS Arabidopsis thaliana #=GS F4IV99/408-532 DE Protein CHROMATIN REMODELING 5 #=GS F4IV99/408-532 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; #=GS F4IV99/408-532 DR GO; GO:0005515; GO:0009506; #=GS Q54Q16/525-631 AC Q54Q16 #=GS Q54Q16/525-631 OS Dictyostelium discoideum #=GS Q54Q16/525-631 DE CHD gene family protein containing chromodomain, helicase domain, and DNA-binding domain #=GS Q54Q16/525-631 DR ORG; Eukaryota; Dictyosteliales; Dictyosteliaceae; Dictyostelium; Dictyostelium discoideum; #=GS Q54Q16/525-631 DR GO; GO:0010468; GO:0031154; GO:0043327; #=GS 2h1eB01/1-121 AC P32657 #=GS 2h1eB01/1-121 OS Saccharomyces cerevisiae S288C #=GS 2h1eB01/1-121 DE Chromo domain-containing protein 1 #=GS 2h1eB01/1-121 DR CATH; 2h1e; B:13-121; #=GS 2h1eB01/1-121 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS 2h1eB01/1-121 DR GO; GO:0000124; GO:0000182; GO:0000790; GO:0001178; GO:0003677; GO:0005739; GO:0006363; GO:0006368; GO:0006369; GO:0008094; GO:0016584; GO:0030874; GO:0031490; GO:0034728; GO:0035064; GO:0042766; GO:0043044; GO:0044212; GO:0046695; GO:0060303; GO:0070615; GO:0071441; GO:0071894; GO:1900050; GO:1902275; GO:2000104; GO:2000616; #=GS 2h1eA01/1-121 AC P32657 #=GS 2h1eA01/1-121 OS Saccharomyces cerevisiae S288C #=GS 2h1eA01/1-121 DE Chromo domain-containing protein 1 #=GS 2h1eA01/1-121 DR CATH; 2h1e; A:11-121; #=GS 2h1eA01/1-121 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS 2h1eA01/1-121 DR GO; GO:0000124; GO:0000182; GO:0000790; GO:0001178; GO:0003677; GO:0005739; GO:0006363; GO:0006368; GO:0006369; GO:0008094; GO:0016584; GO:0030874; GO:0031490; GO:0034728; GO:0035064; GO:0042766; GO:0043044; GO:0044212; GO:0046695; GO:0060303; GO:0070615; GO:0071441; GO:0071894; GO:1900050; GO:1902275; GO:2000104; GO:2000616; #=GS P32657/165-285 AC P32657 #=GS P32657/165-285 OS Saccharomyces cerevisiae S288C #=GS P32657/165-285 DE Chromo domain-containing protein 1 #=GS P32657/165-285 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS P32657/165-285 DR GO; GO:0000124; GO:0000182; GO:0000790; GO:0001178; GO:0003677; GO:0005739; GO:0006363; GO:0006368; GO:0006369; GO:0008094; GO:0016584; GO:0030874; GO:0031490; GO:0034728; GO:0035064; GO:0042766; GO:0043044; GO:0044212; GO:0046695; GO:0060303; GO:0070615; GO:0071441; GO:0071894; GO:1900050; GO:1902275; GO:2000104; GO:2000616; #=GS V4M7Z0/407-532 AC V4M7Z0 #=GS V4M7Z0/407-532 OS Eutrema salsugineum #=GS V4M7Z0/407-532 DE Uncharacterized protein #=GS V4M7Z0/407-532 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Eutremeae; Eutrema; Eutrema salsugineum; #=GS R0G265/403-527 AC R0G265 #=GS R0G265/403-527 OS Capsella rubella #=GS R0G265/403-527 DE Uncharacterized protein #=GS R0G265/403-527 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Capsella; Capsella rubella; #=GS D7L024/405-530 AC D7L024 #=GS D7L024/405-530 OS Arabidopsis lyrata subsp. lyrata #=GS D7L024/405-530 DE Uncharacterized protein #=GS D7L024/405-530 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; #=GS J5S0H3/167-285 AC J5S0H3 #=GS J5S0H3/167-285 OS Saccharomyces kudriavzevii IFO 1802 #=GS J5S0H3/167-285 DE CHD1-like protein #=GS J5S0H3/167-285 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces kudriavzevii; #=GS J8Q5N5/169-287 AC J8Q5N5 #=GS J8Q5N5/169-287 OS Saccharomyces arboricola H-6 #=GS J8Q5N5/169-287 DE Chd1p #=GS J8Q5N5/169-287 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces arboricola; #=GS A0A0L8VRL6/165-285 AC A0A0L8VRL6 #=GS A0A0L8VRL6/165-285 OS Saccharomyces sp. 'boulardii' #=GS A0A0L8VRL6/165-285 DE CHD1p Chromatin remodeler that regulates various aspects of transcription #=GS A0A0L8VRL6/165-285 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces sp. 'boulardii'; #=GS H0GU48/167-285 AC H0GU48 #=GS H0GU48/167-285 OS Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7 #=GS H0GU48/167-285 DE Chd1p #=GS H0GU48/167-285 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae x Saccharomyces kudriavzevii; #=GS N1PA64/165-285 AC N1PA64 #=GS N1PA64/165-285 OS Saccharomyces cerevisiae CEN.PK113-7D #=GS N1PA64/165-285 DE Chd1p #=GS N1PA64/165-285 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS G2WD50/165-285 AC G2WD50 #=GS G2WD50/165-285 OS Saccharomyces cerevisiae Kyokai no. 7 #=GS G2WD50/165-285 DE K7_Chd1p #=GS G2WD50/165-285 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS C8Z7I6/165-285 AC C8Z7I6 #=GS C8Z7I6/165-285 OS Saccharomyces cerevisiae EC1118 #=GS C8Z7I6/165-285 DE Chd1p #=GS C8Z7I6/165-285 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS A6ZRC0/165-285 AC A6ZRC0 #=GS A6ZRC0/165-285 OS Saccharomyces cerevisiae YJM789 #=GS A6ZRC0/165-285 DE RNA polymerase II elongation factor #=GS A6ZRC0/165-285 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GF SQ 20 3mwyW01/36-146 ----------DFH--GIDIVINHRLKTSLEEGKVLEKT-VPDL------NNCK----ENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCKQFIIEDQQVRLDPYVTAEDIEIMDMERERRLDEFEEFH 2dy7A00/1-81 -------QPEDFH--GIDIVINHRLKTSLEEGKVLEKT-VPDL------NNCK----ENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCKQFIIE--------------------------------- Q9US25/193-301 EEEEVEEQVEEEYEPIIDFVLNHRKRADAQD------------------DDPK----SSYQYLIKWQEVSHLHNTWEDYSTLSSVRGYKKVDNYIKQNIIYDREIREDPTTTFEDIEALDIERERKNMLFE--- O14139/180-283 -ATEVSEEPEDTR--AIDVVLDHRLIEGHDG------------------STPS----EDYEFLIKWVNFSHLHCTWEPYNNISMIRGSKKVDNHIKQVILLDREIREDPTTTREDIEAMDIEKERKREN----- F4IV99/408-532 KNQKDDIEEEDAD--VIEKVLWHQLKGMGEDVQTNNKSTVPVLVSQLFDTEPD---WNEMEFLIKWKGQSHLHCQWKTLSDLQNLSGFKKVLNYTKKVT---EEIRYRTALSREEIEVNDVSKEMDLDIIKQN- Q54Q16/525-631 ----LIYEPADED--VIEKILDHRLKKDCSE------------------NEPEIFNVEDYEFLVKWKGWAYIHNTWDAYESLNNFKGNKKLQNYVKGIL---DNIQWRQEASKEDIEQADITKELMKQEIQDYT 2h1eB01/1-121 MKKHHHHHHEDFH--GIDIVINHRLKTSLEEGKVLEKT-VPDL------NNCK----ENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCKQFIIEDQQVRLDPYVTAEDIEIMDMERERRLDEFEEFH 2h1eA01/1-121 MKKHHHHHHEDFH--GIDIVINHRLKTSLEEGKVLEKT-VPDL------NNCK----ENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCKQFIIEDQQVRLDPYVTAEDIEIMDMERERRLDEFEEFH P32657/165-285 HEASANPQPEDFH--GIDIVINHRLKTSLEEGKVLEKT-VPDL------NNCK----ENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCKQFIIEDQQVRLDPYVTAEDIEIMDMERERRLDEFEEFH V4M7Z0/407-532 KNQKDDMEEEDCD--AIEKVLWHQPKGKGEDAHTNKKSIVPVLVSQLFDTEPD---WNEMEFLIKWKGQSHLHCQWKSLSDLQNLSGFKKVLNYTKKMT---EEIRYRTALSREEIEVNDVSKEMDLDIIKQNS R0G265/403-527 KNQKDDIEEEDAD--AIEKVLWHQLKGMGEDAPTNNKSTVPVLVSQLFDSEPD---WNEMEFLIKWKGQSHLHCQWKTLSDLQNLSGFKKVLNYTKKVT---EEIRYRTALSREEIEVNDVSKEMDLDIIKQN- D7L024/405-530 KNQKDDIEEEDPD--VIEKVLWHQLKGMGEDVHTNNKSTVPVLVSQLFDTEPD---WNEMEFLIKWKGQSHLHCQWKTLSDLQNLSGFKKVLNYTKKVT---EEIRYRTALSREEIEVNDVSKEMDLDIIKQNS J5S0H3/167-285 --ASANSQLEDFH--GIDIVINHRLKTSLEESKVLERA-VPGL------NECR----ENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCKQFIIEDQQIRLDPYVTAEDIEVMDMERERRLEEFEEFH J8Q5N5/169-287 --VSANTQPEEFH--GIDIVINHRLKASLEESKELQKT-VPEL------NDCK----ENYEFLIKWTDESHLHNTWETYESIGQIRGLKRLDNYCKQFIIEDQQVRLDPYVTAEDIEIMDMERERRLDELEEFH A0A0L8VRL6/165-285 HEASANPQPEDFH--GIDIVINHRLKTSLEEGKVLEKT-VPDL------NNCK----ENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCKQFIIEDQQVRLDPYVTAEDIEIMDMERERRLDEFEEFH H0GU48/167-285 --ASANSQLEDFH--GIDIVINHRLKTSLEESKVLERA-VPGL------NECR----ENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCKQFIIEDQQIRLDPYVTAEDIEVMDMERERRLEEFEEFH N1PA64/165-285 HEASANPQPEDFH--GIDIVINHRLKTSLEEGKVLEKT-VPDL------NNCK----ENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCKQFIIEDQQVRLDPYVTAEDIEIMDMERERRLDEFEEFH G2WD50/165-285 HEASANPQPEDFH--GIDIVINHRLKTSLEEGKVLEKT-VPDL------NNCK----ENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCKQFIIEDQQVRLDPYVTAEDIEIMDMERERRLDEFEEFH C8Z7I6/165-285 HEASANPQPEDFH--GIDIVINHRLKTSLEEGKVLEKT-VPDL------NNCK----ENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCKQFIIEDQQVRLDPYVTAEDIEIMDMERERRLDEFEEFH A6ZRC0/165-285 HEASANPQPEDFH--GIDIVINHRLKTSLEEGKVLEKT-VPDL------NNCK----ENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCKQFIIEDQQVRLDPYVTAEDIEIMDMERERRLDEFEEFH #=GC scorecons 12222325378350049748649677443662333343055250000005555000065588989945488895696665564455949764984964632245673453453767744754674445344322 #=GC scorecons_70 _________**_____**_**_****___**_____________________________******___****__*_____*____*_***_**_*_________*_______****__*___*__________ #=GC scorecons_80 _________**_____**_*__*__*__________________________________******___****__*__________*_*___**_*_________________*_**__*___*__________ #=GC scorecons_90 __________*_____*__*__*_____________________________________******___****__*__________*_*___**_*______________________________________ //