# STOCKHOLM 1.0
#=GF ID 2.40.50.140/FF/000436
#=GF DE DNA-directed RNA polymerases I, II, and III subunit RPABC3
#=GF AC 2.40.50.140/FF/000436
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 79.152
#=GS 3h0gT00/1-125     AC Q92399
#=GS 3h0gT00/1-125     OS Schizosaccharomyces pombe 972h-
#=GS 3h0gT00/1-125     DE DNA-directed RNA polymerases I, II, and III subunit RPABC3
#=GS 3h0gT00/1-125     DR CATH; 3h0g; T:2-125; 
#=GS 3h0gT00/1-125     DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces; Schizosaccharomyces pombe; 
#=GS 3h0gT00/1-125     DR GO; GO:0005515; GO:0005634; GO:0005665; GO:0005666; GO:0005736; GO:0005829; GO:0006360; GO:0006366; GO:0006383; 
#=GS 3h0gH00/1-125     AC Q92399
#=GS 3h0gH00/1-125     OS Schizosaccharomyces pombe 972h-
#=GS 3h0gH00/1-125     DE DNA-directed RNA polymerases I, II, and III subunit RPABC3
#=GS 3h0gH00/1-125     DR CATH; 3h0g; H:2-125; 
#=GS 3h0gH00/1-125     DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces; Schizosaccharomyces pombe; 
#=GS 3h0gH00/1-125     DR GO; GO:0005515; GO:0005634; GO:0005665; GO:0005666; GO:0005736; GO:0005829; GO:0006360; GO:0006366; GO:0006383; 
#=GS Q92399/1-125      AC Q92399
#=GS Q92399/1-125      OS Schizosaccharomyces pombe 972h-
#=GS Q92399/1-125      DE DNA-directed RNA polymerases I, II, and III subunit RPABC3
#=GS Q92399/1-125      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces; Schizosaccharomyces pombe; 
#=GS Q92399/1-125      DR GO; GO:0005515; GO:0005634; GO:0005665; GO:0005666; GO:0005736; GO:0005829; GO:0006360; GO:0006366; GO:0006383; 
#=GS A0A0D1CKL7/3-161  AC A0A0D1CKL7
#=GS A0A0D1CKL7/3-161  OS Ustilago maydis 521
#=GS A0A0D1CKL7/3-161  DE DNA-directed RNA polymerases I, II, and III subunit RPABC3
#=GS A0A0D1CKL7/3-161  DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Ustilago; Ustilago maydis; 
#=GS U5FSJ3/1-138      AC U5FSJ3
#=GS U5FSJ3/1-138      OS Populus trichocarpa
#=GS U5FSJ3/1-138      DE Uncharacterized protein
#=GS U5FSJ3/1-138      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Malpighiales; Salicaceae; Saliceae; Populus; Populus trichocarpa; 
#=GS V5EVB9/3-162      AC V5EVB9
#=GS V5EVB9/3-162      OS Kalmanozyma brasiliensis GHG001
#=GS V5EVB9/3-162      DE Uncharacterized protein
#=GS V5EVB9/3-162      DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Kalmanozyma; Kalmanozyma brasiliensis; 
#=GS M9LW83/3-160      AC M9LW83
#=GS M9LW83/3-160      OS Moesziomyces antarcticus T-34
#=GS M9LW83/3-160      DE DNA-directed RNA polymerases I, II, and III subunit RPABC3
#=GS M9LW83/3-160      DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Moesziomyces; Moesziomyces antarcticus; 
#=GS A0A0F7SC45/3-156  AC A0A0F7SC45
#=GS A0A0F7SC45/3-156  OS Sporisorium scitamineum
#=GS A0A0F7SC45/3-156  DE Uncharacterized protein
#=GS A0A0F7SC45/3-156  DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Sporisorium; Sporisorium scitamineum; 
#=GS A0A077R7W9/3-158  AC A0A077R7W9
#=GS A0A077R7W9/3-158  OS Melanopsichium pennsylvanicum 4
#=GS A0A077R7W9/3-158  DE DNA-directed RNA polymerases I, II, and III subunit RPABC3
#=GS A0A077R7W9/3-158  DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Melanopsichium; Melanopsichium pennsylvanicum; 
#=GS I2FVW1/3-163      AC I2FVW1
#=GS I2FVW1/3-163      OS Ustilago hordei Uh4857-4
#=GS I2FVW1/3-163      DE Related to RPB8-DNA-directed RNA polymerase I, II, III 16 KD subunit
#=GS I2FVW1/3-163      DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Ustilago; Ustilago hordei; 
#=GS A0A1K0G946/3-163  AC A0A1K0G946
#=GS A0A1K0G946/3-163  OS Ustilago bromivora
#=GS A0A1K0G946/3-163  DE Related to RPB8-DNA-directed RNA polymerase I, II, III 16 KD subunit
#=GS A0A1K0G946/3-163  DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Ustilago; Ustilago bromivora; 
#=GS W3VNP4/3-160      AC W3VNP4
#=GS W3VNP4/3-160      OS Moesziomyces aphidis DSM 70725
#=GS W3VNP4/3-160      DE DNA-directed RNA polymerases I, II, and III subunit RPABC3
#=GS W3VNP4/3-160      DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Moesziomyces; Moesziomyces aphidis; 
#=GS A0A081CI53/3-160  AC A0A081CI53
#=GS A0A081CI53/3-160  OS Moesziomyces antarcticus
#=GS A0A081CI53/3-160  DE DNA-directed RNA polymerases I, II, and III subunit RPABC3
#=GS A0A081CI53/3-160  DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Moesziomyces; Moesziomyces antarcticus; 
#=GF SQ 13
3h0gT00/1-125             MSESVLLDEIFTVTSV--DKQKYQRVSRITAVSGQNDMNLTLDINSQIYPLEKDATFSLQITSNLNSP--------------DLKEAA-----------------------DYIMYGKVYRVEEA---KDEKVSVYVSFGGLLMAIEGSHRKLYRLSL-DHVYLLLRR--
3h0gH00/1-125             MSESVLLDEIFTVTSV--DKQKYQRVSRITAVSGQNDMNLTLDINSQIYPLEKDATFSLQITSNLNSP--------------DLKEAA-----------------------DYIMYGKVYRVEEA---KDEKVSVYVSFGGLLMAIEGSHRKLYRLSL-DHVYLLLRR--
Q92399/1-125              MSESVLLDEIFTVTSV--DKQKYQRVSRITAVSGQNDMNLTLDINSQIYPLEKDATFSLQITSNLNSP--------------DLKEAA-----------------------DYIMYGKVYRVEEA---KDEKVSVYVSFGGLLMAIEGSHRKLYRLSL-DHVYLLLRR--
A0A0D1CKL7/3-161          PTN--LFDTQFVVSQIDPDGKKFDRVSRIIATSPSLDMTLSIDIATDIWPVTEGQQLTFQLASTLKKETS--SAK-PDGVDGETQDAAAQAAERDAWRLDQPGNGGIADDFDYVMYGKIYRYDEK---VADEVTVYGSFGGLMMALTGNFRHMSNITIGSNVYLLMR---
U5FSJ3/1-138              ------MEDIFIVGSV---GKNFDKVTRIEARSERLELFMQLDVNTEVYPIKQEERYAVKLTTTLDPD--------------GTPDTAYYTPIKP---------GSIADNFYYIMHGKLYKILDEGSGANHKVEMLISFGGLLMSLKGNPDCINDFQLDQKYFLCMRKLV
V5EVB9/3-162              PTN--LFDTQFVVNQIDPDGKKFDRVSRIIASSPSLEMTLSIDIATDVWPVSEGQQLTFQLASTLKKETA--ASKLADGADGETQDAASQAAERDAWRLDQPGNGGIADDFDYVMFGKIYRYDEK---VADEVTVYGSFGGLMMALTGNFRHMSNITIGSNVYLLMR---
M9LW83/3-160              PTN--LFDTQFVVNQIDPDGKKFDRVSRIIASSPSLEMSLSIDIATDVWPVSEGQQLTFQLASTLKKEAA--GTK-VDGADGE-QDAAAQAAERDAWRLDQPGNGGIADDFDYVMYGKIYRYDEK---VADEVTVYGSFGGLMMALTGNFRHMSNITIGSNVYLLMR---
A0A0F7SC45/3-156          PTN--LFDTQFVVSQIDPDGKKFDRVSRIIASSPSLEMSLSIDIATDVWPVTEGQQLTFQLASTLKKETA--ATK-IDGVDGETQDAAAQAAERDAWRLDQPGNGGIADDFDYVMYGKIYRYDEK---VNDEVTVYGSFGGLMMALTGNFRHMSNITIGSNS--------
A0A077R7W9/3-158          PTN--LFDTQFVVNQIDPDGKKFDRVSRIIASSPSLEMTLSIDIATDVWPISEGQQLTFQLASTLKKDT-----K-TEGADGDTQDAAAQAAERDAWRLDQPGNGGIADDFDYVMYGKIYRYDEK---VADQVTVYGSFGGLMMALTGNFRHMSNITIGSNVYLLMR---
I2FVW1/3-163              PTN--LFDTQFVVKQIDPDGKKFDRVSRIIASSASLEMTLSIDIATDIWPVSEGQQLTFQLASTLKKDTATGASK-TDAADGDTQDAAAQAAERDAWRLDQPGNGGIADDFDYIMYGKIYRYDEK---AADEVTVYGSFGGLMMALTGNFRHMSNITIGSNVYLLMR---
A0A1K0G946/3-163          PTN--LFDTQFVVKQIDPDGKKFDRVSRIIASSASLEMTLSIDIATDIWPVSEGQQLTFQLASTLKKDTATGASK-TDSADGDTQDAAAQAAERDAWRLDQPGNGGIADDFDYVMYGKIYRYDEK---AADEVTVYGSFGGLMMALTGNFRHMSNITIGSNVYLLMR---
W3VNP4/3-160              PTN--LFDTQFVVNQIDPDGKKFDRVSRIIASSPSLEMSLSIDIATDVWPVSEGQQLTFQLASTLKKEAA--GTK-VDGADGE-QDAAAQAAERDAWRLDQPGNGGIADDFDYVMYGKIYRYDEK---VADEVTVYGSFGGLMMALTGNFRHMSNITIGSNVYLLMR---
A0A081CI53/3-160          PTN--LFDTQFVVNQIDPDGKKFDRVSRIIASSPSLEMSLSIDIATDVWPVSEGQQLTFQLASTLKKEAA--GTK-VDGADGE-QDAAAQAAERDAWRLDQPGNGGIADDFDYVMYGKIYRYDEK---VADEVTVYGSFGGLMMALTGNFRHMSNITIGSNVYLLMR---
#=GC scorecons            34400658449594572265677589799494944577475698565759545544555766769544110011201211226357792222232222222222323332379797996984584000445595774999996976496475645556245677557100
#=GC scorecons_70         _____*_*__*_*__*__*_***_*****_*_*___**_*_***___*_*_________****_*____________________***_______________________**********__*________*_**_*********_*__*______*____**__*___
#=GC scorecons_80         _______*__*_*________**_*****_*_*____*_*__**_____*_________*__*_*____________________***________________________*_****_**__*________*_**_*****_**__*__*____________*__*___
#=GC scorecons_90         __________*_*____________*_**_*_*_________*______*______________*______________________*________________________*_*_**_*____________*____*****_*___*______________________
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