# STOCKHOLM 1.0
#=GF ID 2.40.50.140/FF/000292
#=GF DE Probable ATP-dependent DNA ligase
#=GF AC 2.40.50.140/FF/000292
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 79.812
#=GS 1vs0B03/190-310     AC P9WNV3
#=GS 1vs0B03/190-310     OS Mycobacterium tuberculosis H37Rv
#=GS 1vs0B03/190-310     DE Multifunctional non-homologous end joining DNA repair protein LigD
#=GS 1vs0B03/190-310     DR CATH; 1vs0; B:639-759; 
#=GS 1vs0B03/190-310     DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS 1vs0B03/190-310     DR GO; GO:0000166; GO:0000287; GO:0003677; GO:0003887; GO:0003896; GO:0003899; GO:0003909; GO:0003910; GO:0004652; GO:0005524; GO:0005886; GO:0006266; GO:0006269; GO:0006302; GO:0006303; GO:0008310; GO:0030145; GO:0032553; GO:0046872; 
#=GS 1vs0B03/190-310     DR EC; 6.5.1.1; 
#=GS Q9I1X7/402-523      AC Q9I1X7
#=GS Q9I1X7/402-523      OS Pseudomonas aeruginosa PAO1
#=GS Q9I1X7/402-523      DE Multifunctional non-homologous end joining protein LigD
#=GS Q9I1X7/402-523      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa; 
#=GS Q9I1X7/402-523      DR GO; GO:0003887; GO:0003910; GO:0004532; GO:0016779; GO:0071897; GO:0090503; 
#=GS Q9I1X7/402-523      DR EC; 6.5.1.1; 
#=GS A0R3R7/642-762      AC A0R3R7
#=GS A0R3R7/642-762      OS Mycolicibacterium smegmatis MC2 155
#=GS A0R3R7/642-762      DE Multifunctional non-homologous end joining protein LigD
#=GS A0R3R7/642-762      DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycolicibacterium; Mycolicibacterium smegmatis; 
#=GS A0R3R7/642-762      DR GO; GO:0006303; 
#=GS A0R3R7/642-762      DR EC; 6.5.1.1; 
#=GS 1vs0A03/190-310     AC P9WNV3
#=GS 1vs0A03/190-310     OS Mycobacterium tuberculosis H37Rv
#=GS 1vs0A03/190-310     DE Multifunctional non-homologous end joining DNA repair protein LigD
#=GS 1vs0A03/190-310     DR CATH; 1vs0; A:639-759; 
#=GS 1vs0A03/190-310     DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS 1vs0A03/190-310     DR GO; GO:0000166; GO:0000287; GO:0003677; GO:0003887; GO:0003896; GO:0003899; GO:0003909; GO:0003910; GO:0004652; GO:0005524; GO:0005886; GO:0006266; GO:0006269; GO:0006302; GO:0006303; GO:0008310; GO:0030145; GO:0032553; GO:0046872; 
#=GS 1vs0A03/190-310     DR EC; 6.5.1.1; 
#=GS P9WNV3/639-759      AC P9WNV3
#=GS P9WNV3/639-759      OS Mycobacterium tuberculosis H37Rv
#=GS P9WNV3/639-759      DE Multifunctional non-homologous end joining DNA repair protein LigD
#=GS P9WNV3/639-759      DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS P9WNV3/639-759      DR GO; GO:0000166; GO:0000287; GO:0003677; GO:0003887; GO:0003896; GO:0003899; GO:0003909; GO:0003910; GO:0004652; GO:0005524; GO:0005886; GO:0006266; GO:0006269; GO:0006302; GO:0006303; GO:0008310; GO:0030145; GO:0032553; GO:0046872; 
#=GS P9WNV3/639-759      DR EC; 6.5.1.1; 
#=GS Q9KXZ8/203-318      AC Q9KXZ8
#=GS Q9KXZ8/203-318      OS Streptomyces coelicolor A3(2)
#=GS Q9KXZ8/203-318      DE Probable ATP-dependent DNA ligase
#=GS Q9KXZ8/203-318      DR ORG; Bacteria; Actinobacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces; Streptomyces albidoflavus group; Streptomyces coelicolor; 
#=GS D6EX39/203-318      AC D6EX39
#=GS D6EX39/203-318      OS Streptomyces lividans TK24
#=GS D6EX39/203-318      DE ATP-dependent DNA ligase
#=GS D6EX39/203-318      DR ORG; Bacteria; Actinobacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces; Streptomyces lividans; 
#=GS A0A2P7Z8T7/203-318  AC A0A2P7Z8T7
#=GS A0A2P7Z8T7/203-318  OS Streptomyces sp. 111WW2
#=GS A0A2P7Z8T7/203-318  DE Uncharacterized protein
#=GS A0A2P7Z8T7/203-318  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces; Streptomyces sp. 111WW2; 
#=GS A0A429NGL0/203-318  AC A0A429NGL0
#=GS A0A429NGL0/203-318  OS Streptomyces sp. WAC08401
#=GS A0A429NGL0/203-318  DE ATP-dependent DNA ligase
#=GS A0A429NGL0/203-318  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces; Streptomyces sp. WAC08401; 
#=GS A0A0C5FVF9/203-318  AC A0A0C5FVF9
#=GS A0A0C5FVF9/203-318  OS Streptomyces cyaneogriseus subsp. noncyanogenus
#=GS A0A0C5FVF9/203-318  DE ATP-dependent DNA ligase
#=GS A0A0C5FVF9/203-318  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces; Streptomyces cyaneogriseus; Streptomyces cyaneogriseus subsp. noncyanogenus; 
#=GS A0A3Q8VZW8/203-319  AC A0A3Q8VZW8
#=GS A0A3Q8VZW8/203-319  OS Streptomyces sp. KPB2
#=GS A0A3Q8VZW8/203-319  DE ATP-dependent DNA ligase
#=GS A0A3Q8VZW8/203-319  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces; Streptomyces sp. KPB2; 
#=GS A0A0N6ZSS0/203-319  AC A0A0N6ZSS0
#=GS A0A0N6ZSS0/203-319  OS Streptomyces sp. CCM_MD2014
#=GS A0A0N6ZSS0/203-319  DE ATP-dependent DNA ligase
#=GS A0A0N6ZSS0/203-319  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces; Streptomyces sp. CCM_MD2014; 
#=GS A0A0F7VZM1/203-318  AC A0A0F7VZM1
#=GS A0A0F7VZM1/203-318  OS Streptomyces leeuwenhoekii
#=GS A0A0F7VZM1/203-318  DE Putative DNA ligase-like protein Rv0938/MT0965
#=GS A0A0F7VZM1/203-318  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces; Streptomyces leeuwenhoekii; 
#=GS A0A0H3L6Z3/639-759  AC A0A0H3L6Z3
#=GS A0A0H3L6Z3/639-759  OS Mycobacterium tuberculosis str. Erdman = ATCC 35801
#=GS A0A0H3L6Z3/639-759  DE ATP-dependent DNA ligase
#=GS A0A0H3L6Z3/639-759  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS A0A0H3L6Z3/639-759  DR EC; 6.5.1.1; 
#=GS A0A045IXS9/639-759  AC A0A045IXS9
#=GS A0A045IXS9/639-759  OS Mycobacterium tuberculosis
#=GS A0A045IXS9/639-759  DE ATP-dependent DNA ligase
#=GS A0A045IXS9/639-759  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS A0A045IXS9/639-759  DR EC; 6.5.1.1; 
#=GS R4MBH6/639-759      AC R4MBH6
#=GS R4MBH6/639-759      OS Mycobacterium tuberculosis CAS/NITR204
#=GS R4MBH6/639-759      DE ATP-dependent DNA ligase
#=GS R4MBH6/639-759      DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS R4MBH6/639-759      DR EC; 6.5.1.1; 
#=GS A0A0H3M2S5/639-759  AC A0A0H3M2S5
#=GS A0A0H3M2S5/639-759  OS Mycobacterium tuberculosis variant bovis BCG str. Pasteur 1173P2
#=GS A0A0H3M2S5/639-759  DE Possible ATP dependant DNA ligase
#=GS A0A0H3M2S5/639-759  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS A0A0H3M2S5/639-759  DR EC; 6.5.1.1; 
#=GS P9WNV2/639-759      AC P9WNV2
#=GS P9WNV2/639-759      OS Mycobacterium tuberculosis CDC1551
#=GS P9WNV2/639-759      DE Multifunctional non-homologous end joining DNA repair protein LigD
#=GS P9WNV2/639-759      DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS P9WNV2/639-759      DR EC; 6.5.1.1; 
#=GS P59971/639-759      AC P59971
#=GS P59971/639-759      OS Mycobacterium tuberculosis variant bovis AF2122/97
#=GS P59971/639-759      DE Multifunctional non-homologous end joining protein LigD
#=GS P59971/639-759      DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS P59971/639-759      DR EC; 6.5.1.1; 
#=GS A5U0X8/639-759      AC A5U0X8
#=GS A5U0X8/639-759      OS Mycobacterium tuberculosis H37Ra
#=GS A5U0X8/639-759      DE ATP dependant DNA ligase
#=GS A5U0X8/639-759      DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS A5U0X8/639-759      DR EC; 6.5.1.1; 
#=GS A0A0T9NAL3/639-759  AC A0A0T9NAL3
#=GS A0A0T9NAL3/639-759  OS Mycobacterium tuberculosis
#=GS A0A0T9NAL3/639-759  DE ATP-dependent DNA ligase
#=GS A0A0T9NAL3/639-759  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS A0A0T9NAL3/639-759  DR EC; 6.5.1.1; 
#=GS W1MKI1/402-523      AC W1MKI1
#=GS W1MKI1/402-523      OS Pseudomonas aeruginosa VRFPA03
#=GS W1MKI1/402-523      DE ATP-dependent DNA ligase
#=GS W1MKI1/402-523      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa; 
#=GS A0A0T9EWX8/25-145   AC A0A0T9EWX8
#=GS A0A0T9EWX8/25-145   OS Mycobacterium tuberculosis
#=GS A0A0T9EWX8/25-145   DE ATP-dependent DNA ligase
#=GS A0A0T9EWX8/25-145   DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GF SQ 23
1vs0B03/190-310             WNTQEVVIGGWRAGEGGRSSGVGSLLXGIPGPG---GLQFAGRVGTGLSERELANLKEXLAPLHTDESPFDVPLPARDAKGITYVKPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE
Q9I1X7/402-523              LR-QEFVIVGYTEPKGSRRH-IGALLLGLYSPDEERRLRYAGKVGSGFTAASLKKVRERLEPLAVRSSPLAKVPPARETGSVQWVRPQQLCEVSYAQMTRGGIIRQAVFHGLREDKPAREVTGE
A0R3R7/642-762              WNTQEVVIGGWRQGEGGRSSGIGALVLGIPGPE---GLQFVGRVGTGFTEKELSKLKDMLKPLHTDESPFNAPLPKVDARGVTFVRPELVGEVRYSERTSDGRLRQPSWRGLRPDKTPDEVVWE
1vs0A03/190-310             WNTQEVVIGGWRAGEGGRSSGVGSLLXGIPGPG---GLQFAGRVGTGLSERELANLKEXLAPLHTDESPFDVPLPARDAKGITYVKPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE
P9WNV3/639-759              WNTQEVVIGGWRAGEGGRSSGVGSLLMGIPGPG---GLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYVKPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE
Q9KXZ8/203-318              MRSEDVVVGGWLPGKGRLGGLPGAVLVGQRAAG---RLRYVGGVGTGWSAGERTELAALLAAAASDVCPFD---PVPRVPGARWVVPRLVGEVRYSTRTREGMLRQPSWLRLRPDLAPEESA--
D6EX39/203-318              MRSEDVVVGGWLPGKGRLGGLPGAVLVGQRAAG---RLRYVGGVGTGWSAGERTELAALLAAAASDVCPFD---PVPRVPGARWVVPRLVGEVRYSTRTREGMLRQPSWLRLRPDLAPEESA--
A0A2P7Z8T7/203-318          MRSEDVVVGGWLPGKGRLGGLPGAVLVGQRAAG---RLRYVGGVGTGWSAGERTELAALLAAAASDVCPFD---PVPRVPGARWVVPRLVGEVRYSTRTREGMLRQPSWLRLRPDLAPEESA--
A0A429NGL0/203-318          MRSEDVVIGGWLPGKGRLAGLPGAVLVGQRAAG---RLRYVGGVGTGWSAAERDELAALLRAAATDTCPFD---PVPPVPGARWVVPRLVGEVRYSTRTREGMLRQPSWLRLRPDLAPEESA--
A0A0C5FVF9/203-318          MNSEDVVVGGWLPGKGRLSGLPGAVLVGQRAGG---RLRYVGGVGTGWSEAERAELAALLHAAATEVCPFD---PVPRVPGARWVVPRLVGEVRYSTRTREGMLRQPSWLRLRPDLAPEESA--
A0A3Q8VZW8/203-319          MRSEDVVVGGWLPGKGRLGGLPGAVLVGQRAAG---RLRYVGGVGTGWSEGERAELAGLLAAAASDVCPFD---PVPRVPGARWVVPRLVGEVRYSTRTREGMLRQPSWLRLRPDLTPEESA-A
A0A0N6ZSS0/203-319          MRSEDVVVGGWLPGKGRLGGLPGAVLVGQRAAG---RLRYVGGVGTGWSEGERTELAGLLAAAASDVCPFD---PVPRVPGARWVVPRLVGEVRYSTRTREGMLRQPSWLRLRPDLTPEESA-A
A0A0F7VZM1/203-318          MNSEDVVVGGWLPGRGRLSGLPGAVLVGQRAGG---RLRYVGGVGTGWSEAERAELAALLHAAATEVCPFD---PVPRVPGARWVVPRLVGEVRYSTRTREGMLRQPSWLRLRPDLAPEESA--
A0A0H3L6Z3/639-759          WNTQEVVIGGWRAGEGGRSSGVGSLLMGIPGPG---GLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYVKPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE
A0A045IXS9/639-759          WNTQEVVIGGWRAGEGGRSSGVGSLLMGIPGPG---GLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYVKPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE
R4MBH6/639-759              WNTQEVVIGGWRAGEGGRSSGVGSLLMGIPGPG---GLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYVKPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE
A0A0H3M2S5/639-759          WNTQEVVIGGWRAGEGGRSSGVGSLLMGIPGPG---GLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYVKPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE
P9WNV2/639-759              WNTQEVVIGGWRAGEGGRSSGVGSLLMGIPGPG---GLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYVKPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE
P59971/639-759              WNTQEVVIGGWRAGEGGRSSGVGSLLMGIPGPG---GLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYVKPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE
A5U0X8/639-759              WNTQEVVIGGWRAGEGGRSSGVGSLLMGIPGPG---GLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYVKPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE
A0A0T9NAL3/639-759          WNTQEVVIGGWRAGEGGRSSGVGSLLMGIPGPG---GLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYVKPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE
W1MKI1/402-523              LR-QEFVIVGYTEPKGSRRH-IGALLLGLYSPDEERRLRYAGKVGSGFTAASLKKVRERLEPLAVRSSPLAKVPPARETGSVQWVRPQQLCEVSYAQMTRGGIIRQAVFHGLREDKPAREVTGE
A0A0T9EWX8/25-145           WNTQEVVIGGWRAGEGGRSSGVGSLLMGIPGPG---GLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYVKPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE
#=GC scorecons              4546779779744759555534966859445570005967695997947547555755495655564697612295545475459494775997974495794799577459979547495523
#=GC scorecons_70           ___********__*_*______*_**_*____*____***_*_****_*__*___*___*_____*__***___*_____*___*_*_**_*****__*_**_***_**__****__*_*____
#=GC scorecons_80           _____***_**__*_*______*__*_*_________*_*_*_****_*__*___*___*________**____*_____*___*_*__*_*****__*_**_***_**__**_*__*_*____
#=GC scorecons_90           ______*__*_____*______*__*_*_________*___*_**_*____________*________*_____*_________*_*____**_*___*__*__**_____**_*____*____
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