# STOCKHOLM 1.0
#=GF ID 2.40.50.140/FF/000257
#=GF DE Replication protein A subunit
#=GF AC 2.40.50.140/FF/000257
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 98.715
#=GS Q9SD82/4-115      AC Q9SD82
#=GS Q9SD82/4-115      OS Arabidopsis thaliana
#=GS Q9SD82/4-115      DE Replication protein A 70 kDa DNA-binding subunit B
#=GS Q9SD82/4-115      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS Q9SD82/4-115      DR GO; GO:0006281; GO:0010224; 
#=GS Q10Q08/8-117      AC Q10Q08
#=GS Q10Q08/8-117      OS Oryza sativa Japonica Group
#=GS Q10Q08/8-117      DE Replication protein A 70 kDa DNA-binding subunit B
#=GS Q10Q08/8-117      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; 
#=GS Q10Q08/8-117      DR GO; GO:0005515; GO:0005662; 
#=GS A0A178UED9/4-115  AC A0A178UED9
#=GS A0A178UED9/4-115  OS Arabidopsis thaliana
#=GS A0A178UED9/4-115  DE Replication protein A subunit
#=GS A0A178UED9/4-115  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS A0A178UJ91/4-110  AC A0A178UJ91
#=GS A0A178UJ91/4-110  OS Arabidopsis thaliana
#=GS A0A178UJ91/4-110  DE Replication protein A subunit
#=GS A0A178UJ91/4-110  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS Q9FME0/4-110      AC Q9FME0
#=GS Q9FME0/4-110      OS Arabidopsis thaliana
#=GS Q9FME0/4-110      DE Replication protein A 70 kDa DNA-binding subunit D
#=GS Q9FME0/4-110      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS A8J9G7/5-107      AC A8J9G7
#=GS A8J9G7/5-107      OS Chlamydomonas reinhardtii
#=GS A8J9G7/5-107      DE Replication protein A subunit
#=GS A8J9G7/5-107      DR ORG; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas; Chlamydomonas reinhardtii; 
#=GS F6GSY5/4-112      AC F6GSY5
#=GS F6GSY5/4-112      OS Vitis vinifera
#=GS F6GSY5/4-112      DE Replication protein A subunit
#=GS F6GSY5/4-112      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Vitales; Vitaceae; Viteae; Vitis; Vitis vinifera; 
#=GS A2F7T1/2-108      AC A2F7T1
#=GS A2F7T1/2-108      OS Trichomonas vaginalis
#=GS A2F7T1/2-108      DE Replication protein A subunit
#=GS A2F7T1/2-108      DR ORG; Eukaryota; Trichomonadida; Trichomonadidae; Trichomonas; Trichomonas vaginalis; 
#=GS A0A445KI21/5-113  AC A0A445KI21
#=GS A0A445KI21/5-113  OS Glycine soja
#=GS A0A445KI21/5-113  DE Replication protein A subunit
#=GS A0A445KI21/5-113  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine soja; 
#=GS I1H840/5-118      AC I1H840
#=GS I1H840/5-118      OS Brachypodium distachyon
#=GS I1H840/5-118      DE Replication protein A subunit
#=GS I1H840/5-118      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Brachypodieae; Brachypodium; Brachypodium distachyon; 
#=GS B4FWF2/6-120      AC B4FWF2
#=GS B4FWF2/6-120      OS Zea mays
#=GS B4FWF2/6-120      DE Replication protein A subunit
#=GS B4FWF2/6-120      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS D7M0P7/4-115      AC D7M0P7
#=GS D7M0P7/4-115      OS Arabidopsis lyrata subsp. lyrata
#=GS D7M0P7/4-115      DE Replication protein A subunit
#=GS D7M0P7/4-115      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; 
#=GS I1JZI1/5-113      AC I1JZI1
#=GS I1JZI1/5-113      OS Glycine max
#=GS I1JZI1/5-113      DE Replication protein A subunit
#=GS I1JZI1/5-113      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine max; 
#=GS A0A0E0CX66/8-117  AC A0A0E0CX66
#=GS A0A0E0CX66/8-117  OS Oryza meridionalis
#=GS A0A0E0CX66/8-117  DE Replication protein A subunit
#=GS A0A0E0CX66/8-117  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza meridionalis; 
#=GS A0A0E0NRJ4/8-117  AC A0A0E0NRJ4
#=GS A0A0E0NRJ4/8-117  OS Oryza rufipogon
#=GS A0A0E0NRJ4/8-117  DE Replication protein A subunit
#=GS A0A0E0NRJ4/8-117  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza rufipogon; 
#=GS I1P8V8/8-117      AC I1P8V8
#=GS I1P8V8/8-117      OS Oryza glaberrima
#=GS I1P8V8/8-117      DE Replication protein A subunit
#=GS I1P8V8/8-117      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza glaberrima; 
#=GS A0A0D3FFF4/8-117  AC A0A0D3FFF4
#=GS A0A0D3FFF4/8-117  OS Oryza barthii
#=GS A0A0D3FFF4/8-117  DE Replication protein A subunit
#=GS A0A0D3FFF4/8-117  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza barthii; 
#=GS A0A0E0GIZ1/8-117  AC A0A0E0GIZ1
#=GS A0A0E0GIZ1/8-117  OS Oryza sativa f. spontanea
#=GS A0A0E0GIZ1/8-117  DE Replication protein A subunit
#=GS A0A0E0GIZ1/8-117  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; Oryza sativa f. spontanea; 
#=GS A2DL41/2-108      AC A2DL41
#=GS A2DL41/2-108      OS Trichomonas vaginalis
#=GS A2DL41/2-108      DE Uncharacterized protein
#=GS A2DL41/2-108      DR ORG; Eukaryota; Trichomonadida; Trichomonadidae; Trichomonas; Trichomonas vaginalis; 
#=GS C0HES8/7-120      AC C0HES8
#=GS C0HES8/7-120      OS Zea mays
#=GS C0HES8/7-120      DE Replication protein A subunit
#=GS C0HES8/7-120      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS B6SL03/7-120      AC B6SL03
#=GS B6SL03/7-120      OS Zea mays
#=GS B6SL03/7-120      DE Replication protein A subunit
#=GS B6SL03/7-120      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS A2XDX4/8-117      AC A2XDX4
#=GS A2XDX4/8-117      OS Oryza sativa Indica Group
#=GS A2XDX4/8-117      DE Replication protein A subunit
#=GS A2XDX4/8-117      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; 
#=GS O24183/8-117      AC O24183
#=GS O24183/8-117      OS Oryza sativa
#=GS O24183/8-117      DE Replication protein A subunit
#=GS O24183/8-117      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; 
#=GS D7MUG5/4-110      AC D7MUG5
#=GS D7MUG5/4-110      OS Arabidopsis lyrata subsp. lyrata
#=GS D7MUG5/4-110      DE Replication protein A subunit
#=GS D7MUG5/4-110      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; 
#=GS A0A445G3P7/5-113  AC A0A445G3P7
#=GS A0A445G3P7/5-113  OS Glycine soja
#=GS A0A445G3P7/5-113  DE Replication protein A subunit
#=GS A0A445G3P7/5-113  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine soja; 
#=GS I1MT69/5-113      AC I1MT69
#=GS I1MT69/5-113      OS Glycine max
#=GS I1MT69/5-113      DE Replication protein A subunit
#=GS I1MT69/5-113      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine max; 
#=GS I1MT70/5-113      AC I1MT70
#=GS I1MT70/5-113      OS Glycine max
#=GS I1MT70/5-113      DE Replication protein A subunit
#=GS I1MT70/5-113      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine max; 
#=GF SQ 27
Q9SD82/4-115              -SVTQDGIATVLANQSLDSSS--VRPEIVVQVVDLKPA---GNRYTFSANDGKMKIKAMLPATLTSDIISGKIQNLGLIRLLEYTVNDIPGKSEEKYMLITKCEAVASALDSEIKAEI---
Q10Q08/8-117              -SVTPGAVAFVLENASPDAATGVPVPEIVLQVVDLKPI---GTRFTFLASDGKDKIKTMLLTQLAPEVRSGNIQNLGVIRVLDYTCNTIGEKQ-EKVLIITKLEVVFKALDSEIK------
A0A178UED9/4-115          -SVTQDGIATVLANQSLDSSS--VRPEIVVQVVDLKPA---GNRYTFSANDGKMKIKAMLPATLTSDIISGKIQNLGLIRLLEYTVNDIPGKSEEKYMLITKCEAVASALDSEIKAEI---
A0A178UJ91/4-110          -SVTPDAISTVLSNPSFDSSS--DRSEIVVQVVDLKPI---GNRYTFSANDGKTKVKAMFTASLTPEIISGKIQNLGLIRLIDFTVNDISSKS-TKYFLVTKCEAVGSVLDSEI-------
Q9FME0/4-110              -SVTPDAISTVLSNPSFDSSS--DRSEIVVQVVDLKPI---GNRYTFSANDGKTKVKAMFTASLTPEIISGKIQNLGLIRLIDFTVNDISSKS-TKYFLVTKCEAVGSVLDSEI-------
A8J9G7/5-107              ATLTSGDVARIKSKED-------FANGVVLRVSELQEVG--GKKHKCMLSDGNNSIRGVLASQFADLVASGELSNGCLIKITAFVTNTI--GS-DDVVLATDLSVVSPGTGIVKM------
F6GSY5/4-112              -SITPNGISTILSNPSPDSST--ELPEIIVQVIDLTPI---GNRYKFTANDGKMKLKAMFPSSFSSEINSGNIQNLGLIQVIDYTLNDIPSKQ-EKYLIVTKCEAVSPALEVEFKT-----
A2F7T1/2-108              -SVTEDCLIGIVNNSV-------KPCDQIVQVIECKVTH--SGQLKLALNDKVHYYSGILATQKRDLYNSGELKKFSLIKLKKYVVNN---GY-RQSIVILDTEVVSNDCNSILGRPQSIK
A0A445KI21/5-113          -TVTPDAVSTLLANPSPDSTS--DLPDIVVQVLDLKAT---GNKYMFTANDGKTKLKAMIPSDMRSQVLSGAIQNLGLIRVLDYTVNDIPNKS-DKYLLAIKCEAVSPALEMEIKS-----
I1H840/5-118              -SVTPDALAIILANRSPESPE--DVPEIVVQVVDLKPLGSTGTRFTFMASDGKAKMKAMLPTNFASEVNSGNLQNLGLVRILHYTCNDIPKTL-SKCLIITKCEVVAQALDAEINSEV---
B4FWF2/6-120              -SVTPGAVSYILAHPSTGSDG--AVSDLVVQVLDLKSIG-MGSRFSFTATDGNDKIKAMLPTYFASEVHSGNLKNFGLIRILDYTCNSVKGNA-DKVLIVVKCETVCEALDAEINGEAK-K
D7M0P7/4-115              -SVTQDGIATVLSNQSLDSSS--VRPEIVVQVVDLKPV---GNRYTFNANDGNMKMKAMLPATLTCEIISGKIQNLGLVRLLDYTVNDIPGKSEEKYMLITKCEAVASALDSEIKAEI---
I1JZI1/5-113              -TVTPDAVSTLLANPSPDSTS--DLPDIVVQVLDLKAT---GNKYMFTANDGKTKLKAMIPSDMRSQVLSGAIQNLGLIRVLDYTVNDIPNKS-DKYLLAIKCEAVSPALEMEIKS-----
A0A0E0CX66/8-117          -SVTPGAVAFVLENASPDAATGVPVPEIVLQVVDLKPI---GTRFTFLASDGKDKIKTMLLTQLAPEVRSGNIQNLGLIRVLDYTCNTIGEKQ-EKVLIITKLEVVSKALDSEIK------
A0A0E0NRJ4/8-117          -SVTPGAVAFVLENASPDAATGVPVPEIVLQVVDLKPI---GTRFTFLASDGKDKIKTMLLTQLAPEVRSGNIQNLGVIRVLDYTCNTIGEKQ-EKVLIITKLEVVFKALDSEIK------
I1P8V8/8-117              -SVTPGAVAFVLENASPDAATGVPVPEIVLQVVDLKPI---GTRFTFLASDGKDKIKTMLLTQLAPEVRSGNIQNLGVIRVLDYTCNTIGEKQ-EKVLIITKLEVVFKALDSEIK------
A0A0D3FFF4/8-117          -SVTPGAVAFVLENASPDAATGVPVPEIVLQVVDLKPI---GTRFTFLASDGKDKIKTMLLTQLAPEVRSGNIQNLGVIRVLDYTCNTIGEKQ-EKVLIITKLEVVFKALDSEIK------
A0A0E0GIZ1/8-117          -SVTPGAVAFVLENASPDAATGVPVPEIVLQVVDLKPI---GTRFTFLASDGKDKIKTMLLTQLAPEVRSGNIQNLGVIRVLDYTCNTIGEKQ-EKVLIITKLEVVFKALDSEIK------
A2DL41/2-108              -EVTSNVLEDILVKKV-------NVMEPIVQVVQIKECN-QHDLYRAALSDGTHFIPAMLGSKLKDLIENKVIQRNSLIKLLKYTVSN---NS-KQPLIVLNAE-LHKEMNSIIGKPLALQ
C0HES8/7-120              --VTPVAVSHILAHPSAGSDG--AVTDLVVQVLDLKSVG-TGSRFSFTATDGKDKIKAMLPTNFGSEVRSGNLKNLGLIRIIDYTCNVVKGKD-DKVLVVIKCELVCQALDAEINGEAK-K
B6SL03/7-120              --VTPVAVSHILAHPSAGSDG--AVTDLVVQVLDLKSVG-TGSRFSFTATDGKDKIKAMLPTNFGSEVRSGNLKNLGLIRIIDYTCNVVKGKD-DKVLVVIKCELVCQALDAEINGEAK-K
A2XDX4/8-117              -SVTPGAVAFVLENASPDAATGVPVPEIVLQVVDLKPI---GTRFTFLASDGKDKIKTMLLTQLAPEVRSGNIQNLGVIRVLDYTCNTIGEKQ-EKVLIITKLEVVFKALDSEIK------
O24183/8-117              -SVTPGAVAFVLENASPDAATGVPVPEIVLQVVDLKPI---GTRFTFLASDGKDKIKTMLLTQLAPEVRSGNIQNLGVIRVLDYTCNTIGEKQ-EKVLIITKLEVVFKALDSEIK------
D7MUG5/4-110              -SVTPDAISTVLSNPSFDSSS--ERPEIVVQVVDLKPI---GNRYTFSANDGKTRVKAMFTPTLTPEIISGKIQNLGLIRLIDFTVNDISSKS-TKYFLVNKCEAVGSVLDSDI-------
A0A445G3P7/5-113          -TVTPDAVSMLLANTCPDSSS--DLPEIVVQVLDLKAT---GNKYMFTANDGKTKLKAMISSDMCSQVLSGAIQNLGLIRVLDYTVNVIPNKS-DKYLIVTKCEPVSPALEIEIKS-----
I1MT69/5-113              -TVTPDAVSMLLANTCPDSSS--DLPEIVVQVLDLKAT---GNKYMFTANDGKTKLKAMISSDMCSQVLSGAIQNLGLIRVLDYTVNVIPNKS-DKYLIVTKCEPVSPALEIEIKS-----
I1MT70/5-113              -TVTPDAVSMLLANTCPDSSS--DLPEIVVQVLDLKAT---GNKYMFTANDGKTKLKAMISSDMCSQVLSGAIQNLGLIRVLDYTVNVIPNKS-DKYLIVTKCEPVSPALEIEIKS-----
#=GC scorecons            0589655653674645344330034575768957774400074664646598636566764545444638846676778765687484622640574666574848345665674100000
#=GC scorecons_70         __**___*__**_*____________*_****_***_____*_**_*_*_**____*_**_______*_**_***_****___**_*________*_*___*_*_*___**__*_______
#=GC scorecons_80         __**_______*________________*_**_***_____*________**______*__________**___*__***___**_*________*_______*_*_______________
#=GC scorecons_90         __**__________________________**__________________**_________________**_______*____*__*________________*_*_______________
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