# STOCKHOLM 1.0 #=GF ID 2.40.50.100/FF/000063 #=GF DE Exosome complex component RRP4 #=GF AC 2.40.50.100/FF/000063 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 72.649 #=GS 5vzjH01/21-21_57-108 AC P38792 #=GS 5vzjH01/21-21_57-108 OS Saccharomyces cerevisiae S288C #=GS 5vzjH01/21-21_57-108 DE Exosome complex component RRP4 #=GS 5vzjH01/21-21_57-108 DR CATH; 5vzj; H:52-104; #=GS 5vzjH01/21-21_57-108 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS 5vzjH01/21-21_57-108 DR GO; GO:0000176; GO:0000177; GO:0000467; GO:0005515; GO:0034427; GO:0034475; GO:0070478; GO:0070481; GO:0070651; GO:0071035; GO:0071038; GO:0071042; GO:0071049; GO:0071051; #=GS Q09704/50-106 AC Q09704 #=GS Q09704/50-106 OS Schizosaccharomyces pombe 972h- #=GS Q09704/50-106 DE Exosome complex component rrp4 #=GS Q09704/50-106 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces; Schizosaccharomyces pombe; #=GS Q09704/50-106 DR GO; GO:0000176; GO:0000177; GO:0000178; GO:0000467; GO:0000790; GO:0005634; GO:0005829; GO:0070478; GO:0070481; GO:0070651; GO:0071028; GO:0071035; GO:0071038; GO:0071042; #=GS 5okzl01/1-63 AC P38792 #=GS 5okzl01/1-63 OS Saccharomyces cerevisiae S288C #=GS 5okzl01/1-63 DE Exosome complex component RRP4 #=GS 5okzl01/1-63 DR CATH; 5okz; l:52-106; #=GS 5okzl01/1-63 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS 5okzl01/1-63 DR GO; GO:0000176; GO:0000177; GO:0000467; GO:0005515; GO:0034427; GO:0034475; GO:0070478; GO:0070481; GO:0070651; GO:0071035; GO:0071038; GO:0071042; GO:0071049; GO:0071051; #=GS 5okzb01/1-63 AC P38792 #=GS 5okzb01/1-63 OS Saccharomyces cerevisiae S288C #=GS 5okzb01/1-63 DE Exosome complex component RRP4 #=GS 5okzb01/1-63 DR CATH; 5okz; b:51-106; #=GS 5okzb01/1-63 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS 5okzb01/1-63 DR GO; GO:0000176; GO:0000177; GO:0000467; GO:0005515; GO:0034427; GO:0034475; GO:0070478; GO:0070481; GO:0070651; GO:0071035; GO:0071038; GO:0071042; GO:0071049; GO:0071051; #=GS 5okzR01/1-63 AC P38792 #=GS 5okzR01/1-63 OS Saccharomyces cerevisiae S288C #=GS 5okzR01/1-63 DE Exosome complex component RRP4 #=GS 5okzR01/1-63 DR CATH; 5okz; R:51-106; #=GS 5okzR01/1-63 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS 5okzR01/1-63 DR GO; GO:0000176; GO:0000177; GO:0000467; GO:0005515; GO:0034427; GO:0034475; GO:0070478; GO:0070481; GO:0070651; GO:0071035; GO:0071038; GO:0071042; GO:0071049; GO:0071051; #=GS 5okzH01/1-63 AC P38792 #=GS 5okzH01/1-63 OS Saccharomyces cerevisiae S288C #=GS 5okzH01/1-63 DE Exosome complex component RRP4 #=GS 5okzH01/1-63 DR CATH; 5okz; H:52-106; #=GS 5okzH01/1-63 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS 5okzH01/1-63 DR GO; GO:0000176; GO:0000177; GO:0000467; GO:0005515; GO:0034427; GO:0034475; GO:0070478; GO:0070481; GO:0070651; GO:0071035; GO:0071038; GO:0071042; GO:0071049; GO:0071051; #=GS 5k36H01/21-21_57-108 AC P38792 #=GS 5k36H01/21-21_57-108 OS Saccharomyces cerevisiae S288C #=GS 5k36H01/21-21_57-108 DE Exosome complex component RRP4 #=GS 5k36H01/21-21_57-108 DR CATH; 5k36; H:52-104; #=GS 5k36H01/21-21_57-108 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS 5k36H01/21-21_57-108 DR GO; GO:0000176; GO:0000177; GO:0000467; GO:0005515; GO:0034427; GO:0034475; GO:0070478; GO:0070481; GO:0070651; GO:0071035; GO:0071038; GO:0071042; GO:0071049; GO:0071051; #=GS 5jeaH01/1-63 AC P38792 #=GS 5jeaH01/1-63 OS Saccharomyces cerevisiae S288C #=GS 5jeaH01/1-63 DE Exosome complex component RRP4 #=GS 5jeaH01/1-63 DR CATH; 5jea; H:51-106; #=GS 5jeaH01/1-63 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS 5jeaH01/1-63 DR GO; GO:0000176; GO:0000177; GO:0000467; GO:0005515; GO:0034427; GO:0034475; GO:0070478; GO:0070481; GO:0070651; GO:0071035; GO:0071038; GO:0071042; GO:0071049; GO:0071051; #=GS 5c0xH01/54-106 AC P38792 #=GS 5c0xH01/54-106 OS Saccharomyces cerevisiae S288C #=GS 5c0xH01/54-106 DE Exosome complex component RRP4 #=GS 5c0xH01/54-106 DR CATH; 5c0x; H:52-104; #=GS 5c0xH01/54-106 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS 5c0xH01/54-106 DR GO; GO:0000176; GO:0000177; GO:0000467; GO:0005515; GO:0034427; GO:0034475; GO:0070478; GO:0070481; GO:0070651; GO:0071035; GO:0071038; GO:0071042; GO:0071049; GO:0071051; #=GS 4oo1H01/56-108 AC P38792 #=GS 4oo1H01/56-108 OS Saccharomyces cerevisiae S288C #=GS 4oo1H01/56-108 DE Exosome complex component RRP4 #=GS 4oo1H01/56-108 DR CATH; 4oo1; H:52-104; #=GS 4oo1H01/56-108 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS 4oo1H01/56-108 DR GO; GO:0000176; GO:0000177; GO:0000467; GO:0005515; GO:0034427; GO:0034475; GO:0070478; GO:0070481; GO:0070651; GO:0071035; GO:0071038; GO:0071042; GO:0071049; GO:0071051; #=GS 4ifdH01/54-106 AC P38792 #=GS 4ifdH01/54-106 OS Saccharomyces cerevisiae S288C #=GS 4ifdH01/54-106 DE Exosome complex component RRP4 #=GS 4ifdH01/54-106 DR CATH; 4ifd; H:52-104; #=GS 4ifdH01/54-106 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS 4ifdH01/54-106 DR GO; GO:0000176; GO:0000177; GO:0000467; GO:0005515; GO:0034427; GO:0034475; GO:0070478; GO:0070481; GO:0070651; GO:0071035; GO:0071038; GO:0071042; GO:0071049; GO:0071051; #=GS P38792/44-103 AC P38792 #=GS P38792/44-103 OS Saccharomyces cerevisiae S288C #=GS P38792/44-103 DE Exosome complex component RRP4 #=GS P38792/44-103 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS P38792/44-103 DR GO; GO:0000176; GO:0000177; GO:0000467; GO:0005515; GO:0034427; GO:0034475; GO:0070478; GO:0070481; GO:0070651; GO:0071035; GO:0071038; GO:0071042; GO:0071049; GO:0071051; #=GS A0A1D8NDA4/48-104 AC A0A1D8NDA4 #=GS A0A1D8NDA4/48-104 OS Yarrowia lipolytica #=GS A0A1D8NDA4/48-104 DE Uncharacterized protein #=GS A0A1D8NDA4/48-104 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Dipodascaceae; Yarrowia; Yarrowia lipolytica; #=GS B9WG52/43-100 AC B9WG52 #=GS B9WG52/43-100 OS Candida dubliniensis CD36 #=GS B9WG52/43-100 DE Exosome complex exonuclease, putative #=GS B9WG52/43-100 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Candida; Candida dubliniensis; #=GS R9X9C2/35-91 AC R9X9C2 #=GS R9X9C2/35-91 OS Saccharomycetaceae sp. 'Ashbya aceri' #=GS R9X9C2/35-91 DE AaceriAAL034Cp #=GS R9X9C2/35-91 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomycetaceae sp. 'Ashbya aceri'; #=GS Q75EW2/35-91 AC Q75EW2 #=GS Q75EW2/35-91 OS Eremothecium gossypii ATCC 10895 #=GS Q75EW2/35-91 DE AAL034Cp #=GS Q75EW2/35-91 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Eremothecium; Eremothecium gossypii; #=GS Q59TN2/45-102 AC Q59TN2 #=GS Q59TN2/45-102 OS Candida albicans SC5314 #=GS Q59TN2/45-102 DE Exosome non-catalytic core subunit #=GS Q59TN2/45-102 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Candida; Candida albicans; #=GS H0GHC1/44-103 AC H0GHC1 #=GS H0GHC1/44-103 OS Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7 #=GS H0GHC1/44-103 DE Rrp4p #=GS H0GHC1/44-103 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae x Saccharomyces kudriavzevii; #=GS A0A0L8RIH1/45-104 AC A0A0L8RIH1 #=GS A0A0L8RIH1/45-104 OS Saccharomyces eubayanus #=GS A0A0L8RIH1/45-104 DE RRP4-like protein #=GS A0A0L8RIH1/45-104 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces eubayanus; #=GS A0A0L8VQ08/44-103 AC A0A0L8VQ08 #=GS A0A0L8VQ08/44-103 OS Saccharomyces sp. 'boulardii' #=GS A0A0L8VQ08/44-103 DE RRP4p Exosome non-catalytic core component #=GS A0A0L8VQ08/44-103 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces sp. 'boulardii'; #=GS J6EE87/44-103 AC J6EE87 #=GS J6EE87/44-103 OS Saccharomyces kudriavzevii IFO 1802 #=GS J6EE87/44-103 DE RRP4-like protein #=GS J6EE87/44-103 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces kudriavzevii; #=GS Q6CA66/48-104 AC Q6CA66 #=GS Q6CA66/48-104 OS Yarrowia lipolytica CLIB122 #=GS Q6CA66/48-104 DE YALI0D05511p #=GS Q6CA66/48-104 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Dipodascaceae; Yarrowia; Yarrowia lipolytica; #=GS C4YH94/45-102 AC C4YH94 #=GS C4YH94/45-102 OS Candida albicans WO-1 #=GS C4YH94/45-102 DE Exosome complex exonuclease RRP4 #=GS C4YH94/45-102 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Candida; Candida albicans; #=GS H0GVS1/44-103 AC H0GVS1 #=GS H0GVS1/44-103 OS Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7 #=GS H0GVS1/44-103 DE Rrp4p #=GS H0GVS1/44-103 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae x Saccharomyces kudriavzevii; #=GS N1P4J2/44-103 AC N1P4J2 #=GS N1P4J2/44-103 OS Saccharomyces cerevisiae CEN.PK113-7D #=GS N1P4J2/44-103 DE Rrp4p #=GS N1P4J2/44-103 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS C8Z9K7/44-103 AC C8Z9K7 #=GS C8Z9K7/44-103 OS Saccharomyces cerevisiae EC1118 #=GS C8Z9K7/44-103 DE Rrp4p #=GS C8Z9K7/44-103 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS A6ZSX5/44-103 AC A6ZSX5 #=GS A6ZSX5/44-103 OS Saccharomyces cerevisiae YJM789 #=GS A6ZSX5/44-103 DE 3'-5'-exoribonuclease #=GS A6ZSX5/44-103 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS B3LSI7/44-103 AC B3LSI7 #=GS B3LSI7/44-103 OS Saccharomyces cerevisiae RM11-1a #=GS B3LSI7/44-103 DE 3'-5' exoribonuclease #=GS B3LSI7/44-103 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS B5VJZ7/44-103 AC B5VJZ7 #=GS B5VJZ7/44-103 OS Saccharomyces cerevisiae AWRI1631 #=GS B5VJZ7/44-103 DE YHR069Cp-like protein #=GS B5VJZ7/44-103 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS G2WFE1/44-103 AC G2WFE1 #=GS G2WFE1/44-103 OS Saccharomyces cerevisiae Kyokai no. 7 #=GS G2WFE1/44-103 DE K7_Rrp4p #=GS G2WFE1/44-103 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS C7GWT0/44-103 AC C7GWT0 #=GS C7GWT0/44-103 OS Saccharomyces cerevisiae JAY291 #=GS C7GWT0/44-103 DE Rrp4p #=GS C7GWT0/44-103 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GF SQ 31 5vzjH01/21-21_57-108 --------SQIVTPGELVTDDPIWMRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPLKGRY-- Q09704/50-106 ---DKSIHQNLVTPGQLVTDDPQFMRGHGTYFEDGGIYASVAGSVQRVNKLISVKPLRSK--- 5okzl01/1-63 TGGRSMSDSQIVTPGELVTDDPIWMRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPLKGRYAP 5okzb01/1-63 TGGRSMSDSQIVTPGELVTDDPIWMRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPLKGRYAP 5okzR01/1-63 TGGRSMSDSQIVTPGELVTDDPIWMRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPLKGRYAP 5okzH01/1-63 TGGRSMSDSQIVTPGELVTDDPIWMRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPLKGRYAP 5k36H01/21-21_57-108 --------SQIVTPGELVTDDPIWMRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPLKGRY-- 5jeaH01/1-63 TGGRSMSDSQIVTPGELVTDDPIWMRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPLKGRYAP 5c0xH01/54-106 --------SQIVTPGELVTDDPIWMRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPLKGRY-- 4oo1H01/56-108 --------SQIVTPGELVTDDPIWMRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPLKGRY-- 4ifdH01/54-106 --------SQIVTPGELVTDDPIWMRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPLKGRY-- P38792/44-103 SASKSESDSQIVTPGELVTDDPIWMRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPLKGR--- A0A1D8NDA4/48-104 ---AANVAAGLVTPGKLITEDPIWMRGHGTYSVGNKTFSSTAGVVTKTNKLLSVVPLRGR--- B9WG52/43-100 --TTATAGNSIVTPGELITEDPTWMKGHGTYFLNDKTYSSVAGSISRVNRLLSVIPLRGR--- R9X9C2/35-91 ---EGTDSSVIVTPGELITDDPVWMRGHGTYFLENKTYSSVAGTVSRVNRLLSVIPWRGR--- Q75EW2/35-91 ---EGADSSVIMTPGELITDDPVWMRGHGTYFLENKTYSSVAGTVSRVNRLLSVIPWRGR--- Q59TN2/45-102 --TATAAANSIVTPGELITEDPTWMKGHGTYFINDKTYSSVAGSISRVNRLLSVIPLRGR--- H0GHC1/44-103 SASKSESDSQIXTPGELVTDDPIWMRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPLKGR--- A0A0L8RIH1/45-104 SRSKDESDSQIVTPGELVTDDPIWMRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPLRGR--- A0A0L8VQ08/44-103 SASKSESDSQIVTPGELVTDDPIWMRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPLKGR--- J6EE87/44-103 SRSKDSSDSQIVTPGELITDDPIWMRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPLKGR--- Q6CA66/48-104 ---AANVAAGLVTPGKLITEDPIWMRGHGTYSVGNKTFSSTAGVVTKTNKLLSVVPLRGR--- C4YH94/45-102 --TATAAANSIVTPGELITEDPTWMKGHGTYFINDKTYSSVAGSISRVNRLLSVIPLRGR--- H0GVS1/44-103 SRSKDSSDSQIVTPGELITDDPIWMRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPLKGR--- N1P4J2/44-103 SASKSESDSQIVTPGELVTDDPIWMRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPLKGR--- C8Z9K7/44-103 SASKSESDSQIMTPGELVTDDPIWMRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPLKGR--- A6ZSX5/44-103 SASKSESDSQIVTPGELVTDDPIWMRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPLKGR--- B3LSI7/44-103 SASKSESDSQIVTPGELVTDDPIWMRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPLKGR--- B5VJZ7/44-103 SASKSESDSQIVTPGELVTDDPIWMRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPLKGR--- G2WFE1/44-103 SASKSESDSQIVTPGELVTDDPIWMRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPLKGR--- C7GWT0/44-103 SASKSESDSQIVTPGELVTDDPIWMRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPLKGR--- #=GC scorecons 111332336477999797979968989999976675888979968787979899797788000 #=GC scorecons_70 __________*************************_*******_****************___ #=GC scorecons_80 __________************_*********____*******_*_***********_**___ #=GC scorecons_90 ____________***_*_*_**_********_____****_**_*_*_*_****_*__**___ //