# STOCKHOLM 1.0 #=GF ID 2.40.37.10/FF/000019 #=GF DE Diaminopimelate decarboxylase #=GF AC 2.40.37.10/FF/000019 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 76.445 #=GS 3c5qA01/23-39_282-407 AC B4XMC6 #=GS 3c5qA01/23-39_282-407 OS Helicobacter pylori #=GS 3c5qA01/23-39_282-407 DE Diaminopimelate decarboxylase #=GS 3c5qA01/23-39_282-407 DR CATH; 3c5q; A:3-19; A:262-387; #=GS 3c5qA01/23-39_282-407 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter pylori; #=GS 3c5qA01/23-39_282-407 DR EC; 4.1.1.20; #=GS Q2L4H3/11-23_279-412 AC Q2L4H3 #=GS Q2L4H3/11-23_279-412 OS Bacillus circulans #=GS Q2L4H3/11-23_279-412 DE L-glutamyl-[BtrI acyl-carrier protein] decarboxylase #=GS Q2L4H3/11-23_279-412 DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus circulans; #=GS Q2L4H3/11-23_279-412 DR GO; GO:0016831; GO:0017000; GO:0042803; #=GS Q2L4H3/11-23_279-412 DR EC; 4.1.1.95; #=GS Q8A800/12-21_271-378 AC Q8A800 #=GS Q8A800/12-21_271-378 OS Bacteroides thetaiotaomicron VPI-5482 #=GS Q8A800/12-21_271-378 DE Diaminopimelate decarboxylase #=GS Q8A800/12-21_271-378 DR ORG; Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides thetaiotaomicron; #=GS Q8A800/12-21_271-378 DR EC; 4.1.1.20; #=GS P56129/12-19_262-371 AC P56129 #=GS P56129/12-19_262-371 OS Helicobacter pylori 26695 #=GS P56129/12-19_262-371 DE Diaminopimelate decarboxylase #=GS P56129/12-19_262-371 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter pylori; #=GS P56129/12-19_262-371 DR EC; 4.1.1.20; #=GS 2qghA01/23-39_282-407 AC B4XMC6 #=GS 2qghA01/23-39_282-407 OS Helicobacter pylori #=GS 2qghA01/23-39_282-407 DE Diaminopimelate decarboxylase #=GS 2qghA01/23-39_282-407 DR CATH; 2qgh; A:3-19; A:262-387; #=GS 2qghA01/23-39_282-407 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter pylori; #=GS 2qghA01/23-39_282-407 DR EC; 4.1.1.20; #=GS F5LRB6/11-23_279-412 AC F5LRB6 #=GS F5LRB6/11-23_279-412 OS Paenibacillus sp. HGF7 #=GS F5LRB6/11-23_279-412 DE Putative diaminopimelate decarboxylase #=GS F5LRB6/11-23_279-412 DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus; Paenibacillus sp. HGF7; #=GS A0A372URZ9/12-21_271-378 AC A0A372URZ9 #=GS A0A372URZ9/12-21_271-378 OS Bacteroides sp. AM23-12 #=GS A0A372URZ9/12-21_271-378 DE Diaminopimelate decarboxylase #=GS A0A372URZ9/12-21_271-378 DR ORG; Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides sp. AM23-12; #=GS A0A372URZ9/12-21_271-378 DR EC; 4.1.1.20; #=GS D7IF77/12-21_271-378 AC D7IF77 #=GS D7IF77/12-21_271-378 OS Bacteroides sp. 1_1_14 #=GS D7IF77/12-21_271-378 DE Diaminopimelate decarboxylase #=GS D7IF77/12-21_271-378 DR ORG; Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides sp. 1_1_14; #=GS D7IF77/12-21_271-378 DR EC; 4.1.1.20; #=GS A0A1H8JPE5/12-21_271-378 AC A0A1H8JPE5 #=GS A0A1H8JPE5/12-21_271-378 OS Bacteroides sp. AR20 #=GS A0A1H8JPE5/12-21_271-378 DE Diaminopimelate decarboxylase #=GS A0A1H8JPE5/12-21_271-378 DR ORG; Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides sp. AR20; #=GS A0A1H8JPE5/12-21_271-378 DR EC; 4.1.1.20; #=GS A0A410WYZ8/11-23_279-412 AC A0A410WYZ8 #=GS A0A410WYZ8/11-23_279-412 OS Paenibacillus chitinolyticus #=GS A0A410WYZ8/11-23_279-412 DE Type III PLP-dependent enzyme #=GS A0A410WYZ8/11-23_279-412 DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus; Paenibacillus chitinolyticus; #=GS A5ZHY8/12-21_271-378 AC A5ZHY8 #=GS A5ZHY8/12-21_271-378 OS Bacteroides caccae ATCC 43185 #=GS A5ZHY8/12-21_271-378 DE Diaminopimelate decarboxylase #=GS A5ZHY8/12-21_271-378 DR ORG; Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides caccae; #=GS K9DUB3/11-21_271-378 AC K9DUB3 #=GS K9DUB3/11-21_271-378 OS Bacteroides oleiciplenus YIT 12058 #=GS K9DUB3/11-21_271-378 DE Diaminopimelate decarboxylase #=GS K9DUB3/11-21_271-378 DR ORG; Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides oleiciplenus; #=GS A0A0P0FD63/12-21_271-378 AC A0A0P0FD63 #=GS A0A0P0FD63/12-21_271-378 OS Bacteroides thetaiotaomicron #=GS A0A0P0FD63/12-21_271-378 DE Diaminopimelate decarboxylase #=GS A0A0P0FD63/12-21_271-378 DR ORG; Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides thetaiotaomicron; #=GS A0A0P0FD63/12-21_271-378 DR EC; 4.1.1.20; #=GS R9HHN8/12-21_271-378 AC R9HHN8 #=GS R9HHN8/12-21_271-378 OS Bacteroides thetaiotaomicron dnLKV9 #=GS R9HHN8/12-21_271-378 DE Diaminopimelate decarboxylase #=GS R9HHN8/12-21_271-378 DR ORG; Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides thetaiotaomicron; #=GS R9HHN8/12-21_271-378 DR EC; 4.1.1.20; #=GS A0A1Y3DZR9/12-19_262-371 AC A0A1Y3DZR9 #=GS A0A1Y3DZR9/12-19_262-371 OS Helicobacter pylori SS1 #=GS A0A1Y3DZR9/12-19_262-371 DE Diaminopimelate decarboxylase #=GS A0A1Y3DZR9/12-19_262-371 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter pylori; #=GS A0A1Y3DZR9/12-19_262-371 DR EC; 4.1.1.20; #=GS A0A2J9KK77/12-19_262-371 AC A0A2J9KK77 #=GS A0A2J9KK77/12-19_262-371 OS Helicobacter pylori #=GS A0A2J9KK77/12-19_262-371 DE Diaminopimelate decarboxylase #=GS A0A2J9KK77/12-19_262-371 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter pylori; #=GS A0A2J9KK77/12-19_262-371 DR EC; 4.1.1.20; #=GS B4XMC6/12-19_262-371 AC B4XMC6 #=GS B4XMC6/12-19_262-371 OS Helicobacter pylori #=GS B4XMC6/12-19_262-371 DE Diaminopimelate decarboxylase #=GS B4XMC6/12-19_262-371 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter pylori; #=GS B4XMC6/12-19_262-371 DR EC; 4.1.1.20; #=GS A0A3Q9Y1W2/12-19_262-371 AC A0A3Q9Y1W2 #=GS A0A3Q9Y1W2/12-19_262-371 OS Helicobacter pylori #=GS A0A3Q9Y1W2/12-19_262-371 DE Diaminopimelate decarboxylase #=GS A0A3Q9Y1W2/12-19_262-371 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter pylori; #=GS A0A3Q9Y1W2/12-19_262-371 DR EC; 4.1.1.20; #=GS A0A1U9ISK8/12-19_262-371 AC A0A1U9ISK8 #=GS A0A1U9ISK8/12-19_262-371 OS Helicobacter pylori SS1 #=GS A0A1U9ISK8/12-19_262-371 DE Diaminopimelate decarboxylase #=GS A0A1U9ISK8/12-19_262-371 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter pylori; #=GS A0A1U9ISK8/12-19_262-371 DR EC; 4.1.1.20; #=GS A0A3Q8ATR2/12-19_262-371 AC A0A3Q8ATR2 #=GS A0A3Q8ATR2/12-19_262-371 OS Helicobacter pylori PMSS1 #=GS A0A3Q8ATR2/12-19_262-371 DE Diaminopimelate decarboxylase #=GS A0A3Q8ATR2/12-19_262-371 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter pylori; #=GS A0A3Q8ATR2/12-19_262-371 DR EC; 4.1.1.20; #=GS Q9ZME5/12-19_262-371 AC Q9ZME5 #=GS Q9ZME5/12-19_262-371 OS Helicobacter pylori J99 #=GS Q9ZME5/12-19_262-371 DE Diaminopimelate decarboxylase #=GS Q9ZME5/12-19_262-371 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter pylori; #=GS Q9ZME5/12-19_262-371 DR EC; 4.1.1.20; #=GS A0A1W0VPP0/12-19_262-371 AC A0A1W0VPP0 #=GS A0A1W0VPP0/12-19_262-371 OS Helicobacter pylori #=GS A0A1W0VPP0/12-19_262-371 DE Diaminopimelate decarboxylase #=GS A0A1W0VPP0/12-19_262-371 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter pylori; #=GS A0A1W0VPP0/12-19_262-371 DR EC; 4.1.1.20; #=GS A0A174U4F7/12-21_271-378 AC A0A174U4F7 #=GS A0A174U4F7/12-21_271-378 OS Bacteroides caccae #=GS A0A174U4F7/12-21_271-378 DE Diaminopimelate decarboxylase #=GS A0A174U4F7/12-21_271-378 DR ORG; Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides caccae; #=GF SQ 23 3c5qA01/23-39_282-407 NYEELFQTHKTPFYLYDRSIVAESGELITQVLYEKKAQNKRFVIVDAGMN----DFLRPSLYHAKHAIRVITPS---KGREISPCDVVGPVCESSDTFLKDAHLPELEPGDKIAIEKVGAYGSSMASQYNSR--PKLLELALEDHKIRVIRK------- Q2L4H3/11-23_279-412 ----LTKRFETPFYLYD-------AVYVTEVLYRKASKGEVFVIVDGGMHHHAASTFRGRSMRSNYPMEYIPVREDSGRRELEKVTIAGPLCTPEDCLGKDVHVPALYPGDLVCVLNSGAYGLSFSPVHFLGH-PTPIEILKRNGSYELIRRKGTADDI Q8A800/12-21_271-378 -------TLQTPFYYYD--VVGQCGSLISKVLYVKQGTKKKFAILDAGMT----DLIRPALYQAYHKMENITSE-----EPVEAYDVVGPICESSDVFGKAIDLNKVKRGDLIALRSAGAYGEIMASGYNCRELPK----------------------- P56129/12-19_262-371 ---------KTPFYLYDRSIVAESGELITQVLYEKKAQNKRFVVVDAGMN----DFLRPSLYHAKHAIRVITPS---KGREISPCDVVGPVCESSDTFLKDAHLPELEPGDKLVIEKVGAYGSSMASQYNSR--PK----------------------- 2qghA01/23-39_282-407 NYEELFQTHKTPFYLYDRSIVAESGELITQVLYEKKAQNKRFVIVDAGMN----DFLRPSLYHAKHAIRVITPS---KGREISPCDVVGPVCESSDTFLKDAHLPELEPGDKIAIEKVGAYGSSMASQYNSR--PKLLELALEDHKIRVIRK------- F5LRB6/11-23_279-412 ----LTKRFETPFYLYD-------AVYVTEVLYRKSSKGETFVIVDGGMHHHAASTFRGRSMRSNYPMECIPVRENSGRRELEKVTITGPLCTPEDCVGKDVHVPALYPGDLVCVLNSGAYGLSFSPVHFLGH-PTPIEILKRNGSYELIRRKGTADDI A0A372URZ9/12-21_271-378 -------TLQTPFYYYD--VVGQCGSLISKVLYVKQGTKKKFAILDAGMT----DLIRPALYQAYHKMENITSE-----EPVEAYDVVGPICESSDVFGKAIDLNKVKRGDLIALRSAGAYGEIMASGYNCRELPK----------------------- D7IF77/12-21_271-378 -------TLQTPFYYYD--VVGQCGSLISKVLYVKQGTKKKFAILDAGMT----DLIRPALYQAYHKMENITSE-----EPVEAYDVVGPICESSDVFGKAIDLNKVKRGDLIALRSAGAYGEIMASGYNCRELPK----------------------- A0A1H8JPE5/12-21_271-378 -------TLQTPFYYYD--VVGQCGSLISKVLYVKQGTKKKFAILDAGMT----DLIRPALYQAYHKMENITSE-----EPVEAYDVVGPICESSDVFGKAIDLNKVKRGDLIALRSAGAYGEIMASGYNCRELPK----------------------- A0A410WYZ8/11-23_279-412 ----LTKEFETPFYLYD-------AVYVTEVLYRKTSKGENFVIVDGGMHHHAASTFRGRSMRSNYPMECIPVSEDPGRRELEKVTIAGPLCTPEDCVGKDVQLPALYPGDLVCVLNSGAYGLSFSPVHFLGH-PTPIEILKRNGLYELIRRKGIPEDL A5ZHY8/12-21_271-378 -------TLQTPFYYYD--VVGQCGSLISKVLYVKQGAKKKFAILDAGMT----DLIRPALYQAYHKMENITSE-----EPVESYDVVGPICESSDVFGKVIDLNKVKRGDLIALRSAGAYGEIMASGYNCRELPK----------------------- K9DUB3/11-21_271-378 ------RELRTPFYYYD--ITGQCGSLISRVLYVKQGANKKFAILDAGMT----DLIRPALYQAYHKIENITSE-----EVVEAYDVVGPICESSDVFGKAIDLNKVKRGDLIALRSAGAYGEIMASSYNCRELPK----------------------- A0A0P0FD63/12-21_271-378 -------TLQTPFYYYD--VVGQCGSLISKVLYVKQGTKKKFAILDAGMT----DLIRPALYQAYHKMENITSE-----EPVEAYDVVGPICESSDVFGKAIDLNKVKRGDLIALRSAGAYGEIMASGYNCRELPK----------------------- R9HHN8/12-21_271-378 -------TLQTPFYYYD--VVGQCGSLISKVLYVKQGTKKKFAILDAGMT----DLIRPALYQAYHKMENITSE-----EPVEAYDVVGPICESSDVFGKAIDLNKVKRGDLIALRSAGAYGEIMASGYNCRELPK----------------------- A0A1Y3DZR9/12-19_262-371 ---------KTPFYLYDRSIVAESGELITQVLYEKKAQNKRFVVVDAGMN----DFLRPSLYHAKHAIRVITPS---KGREISPCDVVGPVCESSDTFLKDAHLPELEPGDKLVIEKVGAYGSSMASQYNSR--PK----------------------- A0A2J9KK77/12-19_262-371 ---------KTPFYLYDRSIVAESGELITQVLYEKKAQNKRFVVVDAGMN----DFLRPSLYHAKHAIRVITPS---KGREISPCDVVGPVCESSDTFLKDAHLPELEPGDKLVIEKVGAYGSSMASQYNSR--PK----------------------- B4XMC6/12-19_262-371 ---------KTPFYLYDRSIVAESGELITQVLYEKKAQNKRFVIVDAGMN----DFLRPSLYHAKHAIRVITPS---KGREISPCDVVGPVCESSDTFLKDAHLPELEPGDKIAIEKVGAYGSSMASQYNSR--PK----------------------- A0A3Q9Y1W2/12-19_262-371 ---------KTPFYLYDRSIVAESGELITQVLYEKKAQNKRFVIVDAGMN----DFLRPSLYHAKHAIRVITPS---KGREISPCDVVGPVCESSDTFLKDAHLPELEPGDKIAIEKVGAYGSSMASQYNSR--PK----------------------- A0A1U9ISK8/12-19_262-371 ---------KTPFYLYDRSIVAESGELITQVLYEKKAQNKRFVIVDAGMN----DFLRPSLYHAKHAIRVITPS---KGREISPCDVVGPVCESSDTFLKDAHLPELEPGDKIAIEKVGAYGSSMASQYNSR--PK----------------------- A0A3Q8ATR2/12-19_262-371 ---------KTPFYLYDRSIVAESGELITQVLYEKKAQNKRFVIVDAGMN----DFLRPSLYHAKHAIRVITPS---KGREISPCDVVGPVCESSDTFLKDAHLPELEPGDKIAIEKVGAYGSSMASQYNSR--PK----------------------- Q9ZME5/12-19_262-371 ---------KTPFYLYDRSIVAESGELITQVLYEKKAQNKRFVIVDAGMN----DFLRPSLYHAKHAIRVITPC---GGREISPCDVVGPVCESSDTFLKDANLPELEPGDKLAIEKVGAYGSSMASQYNSR--PK----------------------- A0A1W0VPP0/12-19_262-371 ---------KTPFYLYDRSIVAESGELITQVLYEKKAQNKRFVIVDAGMN----DFLRPSLYHAKHAIRVITPC---GGREISPCDVVGPVCESSDTFLKDANLPELEPGDKLAIEKVGAYGSSMASQYNSR--PK----------------------- A0A174U4F7/12-21_271-378 -------TLQTPFYYYD--VVGQCGSLISKVLYVKQGAKKKFAILDAGMT----DLIRPALYQAYHKMENITSE-----EPVESYDVVGPICESSDVFGKVIDLNKVKRGDLIALRSAGAYGEIMASGYNCRELPK----------------------- #=GC scorecons 000000022599995991144333646765999494545659686969950000645964665647465496440002265654467699696669464955575464599565544599994566647646119600000000000000000000000 #=GC scorecons_70 __________****_**_______*_***_***_*____*_********_____*__**_*__*_*_*__**_____________*****_*****_*_*___*__*__**_*_____****__***_*__*__**_______________________ #=GC scorecons_80 __________****_**__________*__***_*______*_*_*_**________*_______*____*_______________*_**_*___*___*___*_____**_______****______*_____*________________________ #=GC scorecons_90 __________****_**_____________***_*______*_*_*_**________*____________*_________________**_*___*___*_________**_______****____________*________________________ //