# STOCKHOLM 1.0 #=GF ID 2.40.270.10/FF/000011 #=GF DE DNA-directed RNA polymerase subunit beta #=GF AC 2.40.270.10/FF/000011 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 74.820 #=GS Q8I5X9/1082-1092_1210-1346 AC Q8I5X9 #=GS Q8I5X9/1082-1092_1210-1346 OS Plasmodium falciparum 3D7 #=GS Q8I5X9/1082-1092_1210-1346 DE DNA-directed RNA polymerase subunit beta #=GS Q8I5X9/1082-1092_1210-1346 DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; #=GS Q8I5X9/1082-1092_1210-1346 DR GO; GO:0003899; GO:0005666; GO:0006383; #=GS W4XHJ9/158-262 AC W4XHJ9 #=GS W4XHJ9/158-262 OS Strongylocentrotus purpuratus #=GS W4XHJ9/158-262 DE Uncharacterized protein #=GS W4XHJ9/158-262 DR ORG; Eukaryota; Metazoa; Echinodermata; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus; Strongylocentrotus purpuratus; #=GS B3S5S8/780-910 AC B3S5S8 #=GS B3S5S8/780-910 OS Trichoplax adhaerens #=GS B3S5S8/780-910 DE DNA-directed RNA polymerase subunit beta #=GS B3S5S8/780-910 DR ORG; Eukaryota; Metazoa; Placozoa; Trichoplacidae; Trichoplax; Trichoplax adhaerens; #=GS A7T1C9/26-165 AC A7T1C9 #=GS A7T1C9/26-165 OS Nematostella vectensis #=GS A7T1C9/26-165 DE Predicted protein #=GS A7T1C9/26-165 DR ORG; Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella; Nematostella vectensis; #=GS B3RKF5/394-415_519-659 AC B3RKF5 #=GS B3RKF5/394-415_519-659 OS Trichoplax adhaerens #=GS B3RKF5/394-415_519-659 DE DNA-directed RNA polymerase subunit beta #=GS B3RKF5/394-415_519-659 DR ORG; Eukaryota; Metazoa; Placozoa; Trichoplacidae; Trichoplax; Trichoplax adhaerens; #=GS B7P1Z4/188-328 AC B7P1Z4 #=GS B7P1Z4/188-328 OS Ixodes scapularis #=GS B7P1Z4/188-328 DE RNA polymerase II second largest subunit (RPB2), putative #=GS B7P1Z4/188-328 DR ORG; Eukaryota; Metazoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Ixodinae; Ixodes; Ixodes scapularis; #=GS W7JRZ0/1082-1092_1210-1346 AC W7JRZ0 #=GS W7JRZ0/1082-1092_1210-1346 OS Plasmodium falciparum NF54 #=GS W7JRZ0/1082-1092_1210-1346 DE DNA-directed RNA polymerase subunit beta #=GS W7JRZ0/1082-1092_1210-1346 DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; #=GS W7F4Q8/1079-1089_1207-1343 AC W7F4Q8 #=GS W7F4Q8/1079-1089_1207-1343 OS Plasmodium falciparum 7G8 #=GS W7F4Q8/1079-1089_1207-1343 DE DNA-directed RNA polymerase subunit beta #=GS W7F4Q8/1079-1089_1207-1343 DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; #=GS A0A0L7M3C1/1079-1089_1207-1343 AC A0A0L7M3C1 #=GS A0A0L7M3C1/1079-1089_1207-1343 OS Plasmodium falciparum Dd2 #=GS A0A0L7M3C1/1079-1089_1207-1343 DE DNA-directed RNA polymerase subunit beta #=GS A0A0L7M3C1/1079-1089_1207-1343 DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; #=GS A0A024WME7/1081-1091_1209-1345 AC A0A024WME7 #=GS A0A024WME7/1081-1091_1209-1345 OS Plasmodium falciparum MaliPS096_E11 #=GS A0A024WME7/1081-1091_1209-1345 DE DNA-directed RNA polymerase subunit beta #=GS A0A024WME7/1081-1091_1209-1345 DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; #=GS A0A024X4V8/1080-1090_1208-1344 AC A0A024X4V8 #=GS A0A024X4V8/1080-1090_1208-1344 OS Plasmodium falciparum CAMP/Malaysia #=GS A0A024X4V8/1080-1090_1208-1344 DE DNA-directed RNA polymerase subunit beta #=GS A0A024X4V8/1080-1090_1208-1344 DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; #=GS W4J208/1080-1090_1208-1344 AC W4J208 #=GS W4J208/1080-1090_1208-1344 OS Plasmodium falciparum Palo Alto/Uganda #=GS W4J208/1080-1090_1208-1344 DE DNA-directed RNA polymerase subunit beta #=GS W4J208/1080-1090_1208-1344 DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; #=GS A0A0L0CWK4/1080-1090_1208-1344 AC A0A0L0CWK4 #=GS A0A0L0CWK4/1080-1090_1208-1344 OS Plasmodium falciparum RAJ116 #=GS A0A0L0CWK4/1080-1090_1208-1344 DE DNA-directed RNA polymerase subunit beta #=GS A0A0L0CWK4/1080-1090_1208-1344 DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; #=GS A0A024VN85/950-959_1077-1213 AC A0A024VN85 #=GS A0A024VN85/950-959_1077-1213 OS Plasmodium falciparum FCH/4 #=GS A0A024VN85/950-959_1077-1213 DE DNA-directed RNA polymerase subunit beta #=GS A0A024VN85/950-959_1077-1213 DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; #=GS A0A0L1IFR4/1078-1088_1206-1342 AC A0A0L1IFR4 #=GS A0A0L1IFR4/1078-1088_1206-1342 OS Plasmodium falciparum IGH-CR14 #=GS A0A0L1IFR4/1078-1088_1206-1342 DE DNA-directed RNA polymerase subunit beta #=GS A0A0L1IFR4/1078-1088_1206-1342 DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; #=GS A0A0L7KFL9/1081-1091_1209-1345 AC A0A0L7KFL9 #=GS A0A0L7KFL9/1081-1091_1209-1345 OS Plasmodium falciparum HB3 #=GS A0A0L7KFL9/1081-1091_1209-1345 DE DNA-directed RNA polymerase subunit beta #=GS A0A0L7KFL9/1081-1091_1209-1345 DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; #=GS A0A024W4H2/1081-1091_1209-1345 AC A0A024W4H2 #=GS A0A024W4H2/1081-1091_1209-1345 OS Plasmodium falciparum Tanzania (2000708) #=GS A0A024W4H2/1081-1091_1209-1345 DE DNA-directed RNA polymerase subunit beta #=GS A0A024W4H2/1081-1091_1209-1345 DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; #=GS W4IDE2/1081-1091_1209-1345 AC W4IDE2 #=GS W4IDE2/1081-1091_1209-1345 OS Plasmodium falciparum NF135/5.C10 #=GS W4IDE2/1081-1091_1209-1345 DE DNA-directed RNA polymerase subunit beta #=GS W4IDE2/1081-1091_1209-1345 DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; #=GS W7G2M7/1081-1091_1209-1345 AC W7G2M7 #=GS W7G2M7/1081-1091_1209-1345 OS Plasmodium falciparum Santa Lucia #=GS W7G2M7/1081-1091_1209-1345 DE DNA-directed RNA polymerase subunit beta #=GS W7G2M7/1081-1091_1209-1345 DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; #=GS W7JVP7/1082-1092_1210-1346 AC W7JVP7 #=GS W7JVP7/1082-1092_1210-1346 OS Plasmodium falciparum UGT5.1 #=GS W7JVP7/1082-1092_1210-1346 DE DNA-directed RNA polymerase subunit beta #=GS W7JVP7/1082-1092_1210-1346 DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; #=GS A0A024V657/1077-1087_1205-1341 AC A0A024V657 #=GS A0A024V657/1077-1087_1205-1341 OS Plasmodium falciparum Vietnam Oak-Knoll (FVO) #=GS A0A024V657/1077-1087_1205-1341 DE DNA-directed RNA polymerase subunit beta #=GS A0A024V657/1077-1087_1205-1341 DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; #=GF SQ 21 Q8I5X9/1082-1092_1210-1346 -----------NKSSYNNNVSKPELGDKFSSRHGQKGVVGLLVNQEDMPFTESGICPDLIMNPHGFPSRMTVGKLLELVASKAAVMDGEYKYGSIFSGTP----FEEIAEILFRYGFNCSSKELLYSGLTGEPLETYIFMGPIYYQKLKHMVQDKIHARARGP W4XHJ9/158-262 ----------------------PEIGDKFSSRHGQKGVCGLIVQQEDMPFDERGICPDIIMNPHGFPSRMTVGKLIEFLAGKAGVLEGKFHYGTAFGGDK----VVDICEDLRKHGFNYLGKDFLTSGITG-------------------------------- B3S5S8/780-910 ----------------------PEIGDKFSSRHGQKGVCGLIVNQEDMPFT------DQIMNPHGFPSRMTVGKLMEVIGGKASLLDGKFRYGTAFDGDK----LEDLCQTLIDYNYSYAGKDYLTSGITGEGLSAYIFFGPVYYQRLKHMVLDKMHARAKGP A7T1C9/26-165 ----------------------PIIGDKFSSRHGQKGICSQKWPVKNMPFSESG-TPDIIFNPHGFPSRMTIGMMIESMAGKSAALNGHVYDATPFTFSEDDSAIDYFGKLLVKSGYDYFGTERLYSGIDGREFEADIFMGVVYYQRLRHMVADKFQVRTTGP B3RKF5/394-415_519-659 QGYDMEDAMILNKSSVERGFAHPIIGDKFSSRHGQKGVCSQLWPIENMPFTESGMTPDILFNPHGFPSRMTIGMMIESMAGKSASLHGLCHDATPFQFSEKVSAVDYFGKYLEKAGYNYFGTERMYDGMSGEEFEANIFIGTVYYQRLRHMISDKFQVRTTGP B7P1Z4/188-328 ----------------------PMIGDKFASRHGQKGVCSQLWPIENMPFTESGMTPDIIFNPHGFPSRMTIGMMIESMAGKSATLHGFVHDATPFKFSENQPASEYFGELLKKAGYNYHGTERMYSGVDGREMEADIFFGVVYYQRLRHMVADKYQVRTTGP W7JRZ0/1082-1092_1210-1346 -----------NKSSYNNNVSKPELGDKFSSRHGQKGVVGLLVNQEDMPFTESGICPDLIMNPHGFPSRMTVGKLLELVASKAAVMDGEYKYGSIFSGTP----FEEIAEILFRYGFNCSSKELLYSGLTGEPLETYIFMGPIYYQKLKHMVQDKIHARARGP W7F4Q8/1079-1089_1207-1343 -----------NKSSYNNNVSKPELGDKFSSRHGQKGVVGLLVNQEDMPFTESGICPDLIMNPHGFPSRMTVGKLLELVASKAAVMDGEYKYGSIFSGTP----FEEIAEILFRYGFNCSSKELLYSGLTGEPLETYIFMGPIYYQKLKHMVQDKIHARARGP A0A0L7M3C1/1079-1089_1207-1343 -----------NKSSYNNNVSKPELGDKFSSRHGQKGVVGLLVNQEDMPFTESGICPDLIMNPHGFPSRMTVGKLLELVASKAAVMDGEYKYGSIFSGTP----FEEIAEILFRYGFNCSSKELLYSGLTGEPLETYIFMGPIYYQKLKHMVQDKIHARARGP A0A024WME7/1081-1091_1209-1345 -----------NKSSYNNNVSKPELGDKFSSRHGQKGVVGLLVNQEDMPFTESGICPDLIMNPHGFPSRMTVGKLLELVASKAAVMDGEYKYGSIFSGTP----FEEIAEILFRYGFNCSSKELLYSGLTGEPLETYIFMGPIYYQKLKHMVQDKIHARARGP A0A024X4V8/1080-1090_1208-1344 -----------NKSSYNNNVSKPELGDKFSSRHGQKGVVGLLVNQEDMPFTESGICPDLIMNPHGFPSRMTVGKLLELVASKAAVMDGEYKYGSIFSGTP----FEEIAEILFRYGFNCSSKELLYSGLTGEPLETYIFMGPIYYQKLKHMVQDKIHARARGP W4J208/1080-1090_1208-1344 -----------NKSSYNNNVSKPELGDKFSSRHGQKGVVGLLVNQEDMPFTESGICPDLIMNPHGFPSRMTVGKLLELVASKAAVMDGEYKYGSIFSGTP----FEEIAEILFRYGFNCSSKELLYSGLTGEPLETYIFMGPIYYQKLKHMVQDKIHARARGP A0A0L0CWK4/1080-1090_1208-1344 -----------NKSSYNNNVSKPELGDKFSSRHGQKGVVGLLVNQEDMPFTESGICPDLIMNPHGFPSRMTVGKLLELVASKAAVMDGEYKYGSIFSGTP----FEEIAEILFRYGFNCSSKELLYSGLTGEPLETYIFMGPIYYQKLKHMVQDKIHARARGP A0A024VN85/950-959_1077-1213 ------------KSSYNNNVSKPELGDKFSSRHGQKGVVGLLVNQEDMPFTESGICPDLIMNPHGFPSRMTVGKLLELVASKAAVMDGEYKYGSIFSGTP----FEEIAEILFRYGFNCSSKELLYSGLTGEPLETYIFMGPIYYQKLKHMVQDKIHARARGP A0A0L1IFR4/1078-1088_1206-1342 -----------NKSSYNNNVSKPELGDKFSSRHGQKGVVGLLVNQEDMPFTESGICPDLIMNPHGFPSRMTVGKLLELVASKAAVMDGEYKYGSIFSGTP----FEEIAEILFRYGFNCSSKELLYSGLTGEPLETYIFMGPIYYQKLKHMVQDKIHARARGP A0A0L7KFL9/1081-1091_1209-1345 -----------NKSSYNNNVSKPELGDKFSSRHGQKGVVGLLVNQEDMPFTESGICPDLIMNPHGFPSRMTVGKLLELVASKAAVMDGEYKYGSIFSGTP----FEEIAEILFRYGFNCSSKELLYSGLTGEPLETYIFMGPIYYQKLKHMVQDKIHARARGP A0A024W4H2/1081-1091_1209-1345 -----------NKSSYNNNVSKPELGDKFSSRHGQKGVVGLLVNQEDMPFTESGICPDLIMNPHGFPSRMTVGKLLELVASKAAVMDGEYKYGSIFSGTP----FEEIAEILFRYGFNCSSKELLYSGLTGEPLETYIFMGPIYYQKLKHMVQDKIHARARGP W4IDE2/1081-1091_1209-1345 -----------NKSSYNNNVSKPELGDKFSSRHGQKGVVGLLVNQEDMPFTESGICPDLIMNPHGFPSRMTVGKLLELVASKAAVMDGEYKYGSIFSGTP----FEEIAEILFRYGFNCSSKELLYSGLTGEPLETYIFMGPIYYQKLKHMVQDKIHARARGP W7G2M7/1081-1091_1209-1345 -----------NKSSYNNNVSKPELGDKFSSRHGQKGVVGLLVNQEDMPFTESGICPDLIMNPHGFPSRMTVGKLLELVASKAAVMDGEYKYGSIFSGTP----FEEIAEILFRYGFNCSSKELLYSGLTGEPLETYIFMGPIYYQKLKHMVQDKIHARARGP W7JVP7/1082-1092_1210-1346 -----------NKSSYNNNVSKPELGDKFSSRHGQKGVVGLLVNQEDMPFTESGICPDLIMNPHGFPSRMTVGKLLELVASKAAVMDGEYKYGSIFSGTP----FEEIAEILFRYGFNCSSKELLYSGLTGEPLETYIFMGPIYYQKLKHMVQDKIHARARGP A0A024V657/1077-1087_1205-1341 -----------NKSSYNNNVSKPELGDKFSSRHGQKGVVGLLVNQEDMPFTESGICPDLIMNPHGFPSRMTVGKLLELVASKAAVMDGEYKYGSIFSGTP----FEEIAEILFRYGFNCSSKELLYSGLTGEPLETYIFMGPIYYQKLKHMVQDKIHARARGP #=GC scorecons 0000000000022221222222956999979999999856554457699967574479576999999999979566945869665659345566494444000046454649364777636573767955943454366464566656566636635464366 #=GC scorecons_70 ______________________*_**************_*_____*******_*__**_*_************_*_*__*_***_*_*____*__*_____________*_*___****___*_*_**__*______**_*__***_*_**__**___*__** #=GC scorecons_80 ______________________*__*************_______*_***_*_*__**_*_************___*__*_*_____*_______*_______________*___**_____*_*_**__*________________________________ #=GC scorecons_90 ______________________*__****_********_________***_______*___**********_*___*____*_____*_______*_______________*_______________*__*________________________________ //