# STOCKHOLM 1.0
#=GF ID 2.40.160.10/FF/000023
#=GF DE Outer membrane protein II
#=GF AC 2.40.160.10/FF/000023
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 42.044
#=GS 3vzwX00/1-355  AC Q5RT80
#=GS 3vzwX00/1-355  OS Neisseria meningitidis
#=GS 3vzwX00/1-355  DE Outer membrane protein II
#=GS 3vzwX00/1-355  DR CATH; 3vzw; X:1-341; 
#=GS 3vzwX00/1-355  DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria meningitidis; 
#=GS P18195/20-348  AC P18195
#=GS P18195/20-348  OS Neisseria gonorrhoeae
#=GS P18195/20-348  DE Major outer membrane protein P.IB
#=GS P18195/20-348  DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria gonorrhoeae; 
#=GS P18195/20-348  DR GO; GO:0005576; GO:0006898; GO:0071682; 
#=GS Q9Z3B6/1-317   AC Q9Z3B6
#=GS Q9Z3B6/1-317   OS Neisseria meningitidis
#=GS Q9Z3B6/1-317   DE Class 2 porin protein
#=GS Q9Z3B6/1-317   DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria meningitidis; 
#=GS Q9Z3B6/1-317   DR GO; GO:0042802; 
#=GS 3vztX00/1-355  AC Q5RT80
#=GS 3vztX00/1-355  OS Neisseria meningitidis
#=GS 3vztX00/1-355  DE Outer membrane protein II
#=GS 3vztX00/1-355  DR CATH; 3vzt; X:1-341; 
#=GS 3vztX00/1-355  DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria meningitidis; 
#=GS 3a2sX00/1-355  AC Q5RT80
#=GS 3a2sX00/1-355  OS Neisseria meningitidis
#=GS 3a2sX00/1-355  DE Outer membrane protein II
#=GS 3a2sX00/1-355  DR CATH; 3a2s; X:1-341; 
#=GS 3a2sX00/1-355  DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria meningitidis; 
#=GS 3vzuX00/1-355  AC M4GGR4
#=GS 3vzuX00/1-355  OS Neisseria meningitidis
#=GS 3vzuX00/1-355  DE Outer membrane protein
#=GS 3vzuX00/1-355  DR CATH; 3vzu; X:1-341; 
#=GS 3vzuX00/1-355  DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria meningitidis; 
#=GS P20148/20-348  AC P20148
#=GS P20148/20-348  OS Neisseria gonorrhoeae
#=GS P20148/20-348  DE Major outer membrane protein P.IB
#=GS P20148/20-348  DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria gonorrhoeae; 
#=GS Q5F5V7/20-348  AC Q5F5V7
#=GS Q5F5V7/20-348  OS Neisseria gonorrhoeae FA 1090
#=GS Q5F5V7/20-348  DE Membrane protein
#=GS Q5F5V7/20-348  DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria gonorrhoeae; 
#=GS B2CNM2/3-331   AC B2CNM2
#=GS B2CNM2/3-331   OS Neisseria gonorrhoeae
#=GS B2CNM2/3-331   DE Por
#=GS B2CNM2/3-331   DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria gonorrhoeae; 
#=GS Q5RT80/1-322   AC Q5RT80
#=GS Q5RT80/1-322   OS Neisseria meningitidis
#=GS Q5RT80/1-322   DE Outer membrane protein II
#=GS Q5RT80/1-322   DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria meningitidis; 
#=GS Q8KS73/1-317   AC Q8KS73
#=GS Q8KS73/1-317   OS Neisseria meningitidis
#=GS Q8KS73/1-317   DE Outer membrane protein
#=GS Q8KS73/1-317   DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria meningitidis; 
#=GS O66060/1-323   AC O66060
#=GS O66060/1-323   OS Neisseria meningitidis
#=GS O66060/1-323   DE Class 2 porin protein
#=GS O66060/1-323   DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria meningitidis; 
#=GS Q51274/1-323   AC Q51274
#=GS Q51274/1-323   OS Neisseria meningitidis
#=GS Q51274/1-323   DE Outer membrane protein class II Serotype 9
#=GS Q51274/1-323   DR ORG; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria meningitidis; 
#=GF SQ 13
3vzwX00/1-355          MASMTGGQQMGRDLQVTLYGTIKAGVEVSRVKDAGTYKAQGGKSKTATQIADFGSKIGFKGQEDLGNGMKAIWQLEQKASIAGTNSGWGNRQSFIGLKGGFGTVRAGNLNTVLKDSGDNVNAWESGSNTEDVLGLGTIGRVESREISVRYDSPVFAGFSGSVQYVPRDNANDVDKYKHTKSSRESYHAGLKYENAGFFGQYAGSFAKYADLNTDAE-RVAVNTANAHPVKDYQVHRVVAGYDANDLYVSVAGQYEAAKNNEVGSIK-GKKHEQTQVAATAAYRFGNVTPRVSYAHGFKAKVNGVKDANYQYDQVIVGADYDFSKRTSALVSAGWLKQGKGAGKVEQTASMVGLRHKF
P18195/20-348          --------------DVTLYGAIKA--GVQTYRSVEHTDGKVSKVETGSEIADFGSKIGFKGQEDLGNGLKAVWQLEQGASVAGTNTGWGNKQSFVGLKGGFGTIRAGSLNSPLKNTDANVNAWESGKFTGNVLEISGMAKREHRYLSVRYDSPEFAGFSGSVQYAPKDNSG---------SNGESYHVGLNYQNSGFFAQYAGLFQRYGEGTKKIEYEHQVYSIPSLFVEKLQVHRLVGGYDNNALYVSVAAQQQDAK--LYGARRANSHNSQTEVAATAAYRFGNVTPRVSYAHGFKGTVDSADHDN-TYDQVVVGAEYDFSKRTSALVSAGWLQEGKGADKIVSTASAVVLRHKF
Q9Z3B6/1-317           --------------------------EVSRVKN------QGVKTKTATQIADFGSKIGFKGQEDLGNGMKAIWQLEQKASIAGTNSGWGNRQSFIGLKGGFGTVRVGNLNTVLKDSGDNVNAWESGSNTGDVLGLGTIGRVESREISVRYDSPVFAGFSGSVQYVPRDNANDKDKYTHKQSSRESYHAGLKYENAGFFGQYAGSFAKYADLKDNAE-RVAVGTTGAHPVKDYQVHRVVAGYDANDLYVSVAGQYEAAKNNDTNPATNGKKLEQTQVAATAAYRFGNVTPRVSYAHGFKAKVNGKKAARYQYDQVIVGADYDFSKRTSALVSVGWLKEGKGVNKTEKTASM-------
3vztX00/1-355          MASMTGGQQMGRDLQVTLYGTIKAGVEVSRVKDAGTYKAQGGKSKTATQIADFGSKIGFKGQEDLGNGMKAIWQLEQKASIAGTNSGWGNRQSFIGLKGGFGTVRAGNLNTVLKDSGDNVNAWESGSNTEDVLGLGTIGRVESREISVRYDSPVFAGFSGSVQYVPRDNANDVDKYKHTKSSRESYHAGLKYENAGFFGQYAGSFAKYADLNTDAE-RVAVNTANAHPVKDYQVHRVVAGYDANDLYVSVAGQYEAAKNNEVGSIK-GKKHEQTQVAATAAYRFGNVTPRVSYAHGFKAKVNGVKDANYQYDQVIVGADYDFSKRTSALVSAGWLKQGKGAGKVEQTASMVGLRHKF
3a2sX00/1-355          MASMTGGQQMGRDLQVTLYGTIKAGVEVSRVKDAGTYKAQGGKSKTATQIADFGSKIGFKGQEDLGNGMKAIWQLEQKASIAGTNSGWGNRQSFIGLKGGFGTVRAGNLNTVLKDSGDNVNAWESGSNTEDVLGLGTIGRVESREISVRYDSPVFAGFSGSVQYVPRDNANDVDKYKHTKSSRESYHAGLKYENAGFFGQYAGSFAKYADLNTDAE-RVAVNTANAHPVKDYQVHRVVAGYDANDLYVSVAGQYEAAKNNEVGSIK-GKKHEQTQVAATAAYRFGNVTPRVSYAHGFKAKVNGVKDANYQYDQVIVGADYDFSKRTSALVSAGWLKQGKGAGKVEQTASMVGLRHKF
3vzuX00/1-355          MASMTGGQQMGRDLQVTLYGTIKAGVEVSRVKDAGTYKAQGGKSKTATQIADFGSKIGFKGQEDLGNGMKAIWQLEQKASIAGTNSGWGNRQSFIGLKGGFGTVRAGNLNTVLKDSGDNVNAWESGSNTEDVLGLGTIGRVESREISVRYDSPVFAGFSGSVQYVPRDNANDVDKYKHTKSSRESYHAGLKYENAGFFGQYAGSFAKYADLNTDAE-RVAVNTANAHPVKDYQVHRVVAGYDANDLYVSVAGQYEAAKNNEVGSIK-GKKHEQTQVAATAAYRFGNVTPRVSYAHGFKAKVNGVKDANYQYDQVIVGADYDFSKRTSALVSAGWLKQGKGAGKVEQTASMVGLRHKF
P20148/20-348          --------------DVTLYGAIKA--GVQTYRSVEHTDGKVSKVETGSEIADFGSKIGFKGQEDLGNGLKAVWQLEQGASVAGTNTGWGNKQSFVGLKGGFGTIRAGSLNSPLKNTGANVNAWESGKFTGNVLEISGMAQREHRYLSVRYDSPEFAGFSGSVQYAPKDNSG---------SNGESYHVGLNYQNSGFFAQYAGLFQRYGEGTKKIEYDDQTYSIPSLFVEKLQVHRLVGGYDNNALYVSVAAQQQDAK--LYGAMSGNSHNSQTEVAATAAYRFGNVTPRVSYAHGFKGTVDSANHDN-TYDQVVVGAEYDFSKRTSALVSAGWLQGGKGADKIVSTASAVVLRHKF
Q5F5V7/20-348          --------------DVTLYGAIKA--GVQTYRSVEHTDGKVSKVETGSEIADFGSKIGFKGQEDLGNGLKAVWQLEQGASVAGTNTGWGNKQSFVGLKGGFGTIRAGSLNSPLKNTGANVNAWESGKFTGNVLEISGMAQREHRYLSVRYDSPEFAGFSGSVQYAPKDNSG---------SNGESYHVGLNYQNSGFFAQYAGLFQRYGEGTKKIEYDGQTYSIPSLFVEKLQVHRLVGGYDNNALYVSVAAQQQDAK--LYGAMSGNSHNSQTEVAATAAYRFGNVTPRVSYAHGFKGTVDSANHDN-TYDQVVVGAEYDFSKRTSALVSAGWLQEGKGADKIVSTASAVVLRHKF
B2CNM2/3-331           --------------DVTLYGTIKA--GVQTYRSVEHTKGKVSKVETGSEIADFGSKIGFKGQEDLGNGLKAVWQLEQGASVAGTNTGWGNKQSFVGLKGGFGTIRAGSLNSPLKNTKDNVNAWDSGKFTGDVLEISGMAKREHRYLSVRYDSPEFAGFSGSVQYAPKDNSG---------SNGESYHVGLNYRNGGFFAQYAGLFQRYGEGTKKIEYDNQFYSFPSLYVEKLQVHRLVGGYDNNALYASVAAQQQDAK--LYGTWRANSHNSQTEVAATAAYRFGNLTPRVSYAHGFKGSVYSADYDN-TYDQVVVGAEYDFSKRTSALVSVGWLQAGKGADKIVSTASAVVLRHKF
Q5RT80/1-322           --------------------------EVSRVKDAGTYKAQGGKSKTATQIADFGSKIGFKGQEDLGNGMKAIWQLEQKASIAGTNSGWGNRQSFIGLKGGFGTVRAGNLNTVLKDSGDNVNAWESGSNTEDVLGLGTIGRVESREISVRYDSPVFAGFSGSVQYVPRDNANDVDKYKHTKSSRESYHAGLKYENAGFFGQYAGSFAKYADLNTDAE-RVAVNTANAHPVKDYQVHRVVAGYDANDLYVSVAGQYEAAKNNEVGSIK-GKKHEQTQVAATAAYRFGNVTPRVSYAHGFKAKVNGVKDANYQYDQVIVGADYDFSKRTSALVSAGWLKQGKGAGKVEQTASM-------
Q8KS73/1-317           --------------------------EVSRVKN------QGVKTKTATQIADFGSKIGFKGQEDLGNGMKAIWQLEQKASIAGTNSGWGNRQSFIGLKGGFGTVRVGNLNTVLKDSGDNVNAWESGSNTGDVLGLGTIGRVESREISVRYDSPVFAGFSGSVQYVPRDNANDKDKYTHKQSSRESYHAGLKYENAGFFGQYAGSFAKYADLKDNAE-RVAVGTTGAHPVKDYQVHRVVAGYDANDLYVSVAGQYEAAKNNDTNPATNGKKLEQTQVAATAAYRFGNVTPRVSYAHGFKAKVNGKKAARYQYDQVIVGADYDFSKRTSALVSVGWLKEGKGVNKTEKTASM-------
O66060/1-323           --------------------------EVSRVKDAGTYKAQGGKSKTATQIADFGSKIGFKGQEDLANGMKAIWQLEQKASIAGTNSGWGNRQSFIGLKGGFGTVRAGNLNTVLKDSGDNVNAWESGSNTEDVLGLGTIGRVETREISVRYDSPVFAGFSGSVQYVPRDNANDEDKYKHKLSSRESYHAGLKYENAGFFGQYAGSFAKYADLNKDAE-RVAAGTSGAYAVKDYQVHRVVAGYDANDLYVSVAGQYEAAKNNTGTVGEQGKKHEQTQVAATAAYRFGNVTPRVSYAHGFKAKVNGKKAARYQYDQVIVGADYDFSKRTSALVSAGWLKQGKGAEKVEKTASM-------
Q51274/1-323           --------------------------EVSRVKDAGTYKAQGGKSKTATQIADFGSKIGFKGQEDLGNGMKAIWQLEQKASIAGTNSGWGNRQSFIGLKGDFGTVRAGNLNTVLKDSGDNVNAWESGSNTGDVLGLGTIGRVESREISVRYDSPVFAGFSGSVQYVPRDNANDKDKYEHHKSSRESYHAGLKYENAGFFGQYAGSFAKYADLNNDAE-RVAVNTPNAHAVKDYQVHRVVAGYDANDLYVSVAGQYEAAKNNEVGNLNIGKKHEQTQVAATAAYRFGNVTPRVSYAHGFKAKVNGEKAARYQYDQVIVGADYDFSKRTSALVSVGWLQEGKGKNKTEKTASM-------
#=GC scorecons         000000000000002333332333006955475443344654946966699999999999999998996997999995997999969999799979999899979796996599666699999899549669966656664959469999999599999999996979965313331311965999969969695999699995957967454559154554634654965599996969995959979996956599333364341556459969999999999989999999999965956453563599997999799999999999969996599965955499953233333
#=GC scorecons_70      ___________________________*___*_______*__*__*__*****************************_*******_*********************_**__***_*_********__*_***_*__*_*_*_*_********_**********_****___________*__****_**_*_*_***_****_*_**_*_____*____________*___******_***_*_******_*_*_**____*_________**************************__*______*__**************************_****_*___***________
#=GC scorecons_80      ___________________________*______________*__*___*******************_**_*****_**_****_****_***_********_***_**__**____********__*__**________*_*__*******_**********_*_**___________*__****_**_*_*_***_****_*__*_______*____________*___****_*_***_*_******_*___**______________**_***********************__*_________****_***_************_***__***__*___***________
#=GC scorecons_90      ___________________________*______________*__*___*******************_**_*****_**_****_****_***_********_*_*_**__**____********__*__**________*_*__*******_**********_*_**___________*__****_**_*_*_***_****_*__*_______*____________*___****_*_***_*_**_***_*___**______________**_***********_***********__*_________****_***_************_***__***__*___***________
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