# STOCKHOLM 1.0
#=GF ID 2.40.10.120/FF/000010
#=GF DE NS3 protease
#=GF AC 2.40.10.120/FF/000010
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 22.872
#=GS Q91RS4/3-181      AC Q91RS4
#=GS Q91RS4/3-181      OS Hepacivirus C
#=GS Q91RS4/3-181      DE NS3 protease
#=GS Q91RS4/3-181      DR ORG; Viruses; Flaviviridae; Hepacivirus; Hepacivirus C; 
#=GS Q91RS4/3-181      DR GO; GO:0008236; GO:0097264; 
#=GS A0A0K1D0A7/3-181  AC A0A0K1D0A7
#=GS A0A0K1D0A7/3-181  OS Hepacivirus C
#=GS A0A0K1D0A7/3-181  DE Nonstructural protein NS3
#=GS A0A0K1D0A7/3-181  DR ORG; Viruses; Flaviviridae; Hepacivirus; Hepacivirus C; 
#=GS C1KIK8/3-181      AC C1KIK8
#=GS C1KIK8/3-181      OS Hepacivirus C
#=GS C1KIK8/3-181      DE NS3 protease
#=GS C1KIK8/3-181      DR ORG; Viruses; Flaviviridae; Hepacivirus; Hepacivirus C; 
#=GS C1KIK7/3-181      AC C1KIK7
#=GS C1KIK7/3-181      OS Hepacivirus C
#=GS C1KIK7/3-181      DE NS3 protease
#=GS C1KIK7/3-181      DR ORG; Viruses; Flaviviridae; Hepacivirus; Hepacivirus C; 
#=GS R9UGL2/3-181      AC R9UGL2
#=GS R9UGL2/3-181      OS Hepacivirus C
#=GS R9UGL2/3-181      DE NS3 protease
#=GS R9UGL2/3-181      DR ORG; Viruses; Flaviviridae; Hepacivirus; Hepacivirus C; 
#=GS A0A0K1D0I6/3-181  AC A0A0K1D0I6
#=GS A0A0K1D0I6/3-181  OS Hepacivirus C
#=GS A0A0K1D0I6/3-181  DE Nonstructural protein NS3
#=GS A0A0K1D0I6/3-181  DR ORG; Viruses; Flaviviridae; Hepacivirus; Hepacivirus C; 
#=GS C1KIC3/3-181      AC C1KIC3
#=GS C1KIC3/3-181      OS Hepacivirus C
#=GS C1KIC3/3-181      DE NS3 protease
#=GS C1KIC3/3-181      DR ORG; Viruses; Flaviviridae; Hepacivirus; Hepacivirus C; 
#=GS A0A0K1CZF9/3-181  AC A0A0K1CZF9
#=GS A0A0K1CZF9/3-181  OS Hepacivirus C
#=GS A0A0K1CZF9/3-181  DE Nonstructural protein NS3
#=GS A0A0K1CZF9/3-181  DR ORG; Viruses; Flaviviridae; Hepacivirus; Hepacivirus C; 
#=GS A0A0K1D0H6/3-181  AC A0A0K1D0H6
#=GS A0A0K1D0H6/3-181  OS Hepacivirus C
#=GS A0A0K1D0H6/3-181  DE Nonstructural protein NS3
#=GS A0A0K1D0H6/3-181  DR ORG; Viruses; Flaviviridae; Hepacivirus; Hepacivirus C; 
#=GS A0A0A7ARQ1/3-181  AC A0A0A7ARQ1
#=GS A0A0A7ARQ1/3-181  OS Hepacivirus C
#=GS A0A0A7ARQ1/3-181  DE NS3 protease
#=GS A0A0A7ARQ1/3-181  DR ORG; Viruses; Flaviviridae; Hepacivirus; Hepacivirus C; 
#=GS A0A0A7AS71/3-181  AC A0A0A7AS71
#=GS A0A0A7AS71/3-181  OS Hepacivirus C
#=GS A0A0A7AS71/3-181  DE NS3 protease
#=GS A0A0A7AS71/3-181  DR ORG; Viruses; Flaviviridae; Hepacivirus; Hepacivirus C; 
#=GS A0A0B4WYC6/3-182  AC A0A0B4WYC6
#=GS A0A0B4WYC6/3-182  OS Hepacivirus C
#=GS A0A0B4WYC6/3-182  DE NS3 protease
#=GS A0A0B4WYC6/3-182  DR ORG; Viruses; Flaviviridae; Hepacivirus; Hepacivirus C; 
#=GS C1KI12/3-181      AC C1KI12
#=GS C1KI12/3-181      OS Hepacivirus C
#=GS C1KI12/3-181      DE NS3 protease
#=GS C1KI12/3-181      DR ORG; Viruses; Flaviviridae; Hepacivirus; Hepacivirus C; 
#=GS C1KHN2/3-181      AC C1KHN2
#=GS C1KHN2/3-181      OS Hepacivirus C
#=GS C1KHN2/3-181      DE NS3 protease
#=GS C1KHN2/3-181      DR ORG; Viruses; Flaviviridae; Hepacivirus; Hepacivirus C; 
#=GS C1KHW8/3-181      AC C1KHW8
#=GS C1KHW8/3-181      OS Hepacivirus C
#=GS C1KHW8/3-181      DE NS3 protease
#=GS C1KHW8/3-181      DR ORG; Viruses; Flaviviridae; Hepacivirus; Hepacivirus C; 
#=GS C1KIN4/3-181      AC C1KIN4
#=GS C1KIN4/3-181      OS Hepacivirus C
#=GS C1KIN4/3-181      DE NS3 protease
#=GS C1KIN4/3-181      DR ORG; Viruses; Flaviviridae; Hepacivirus; Hepacivirus C; 
#=GS C1KHW2/3-181      AC C1KHW2
#=GS C1KHW2/3-181      OS Hepacivirus C
#=GS C1KHW2/3-181      DE NS3 protease
#=GS C1KHW2/3-181      DR ORG; Viruses; Flaviviridae; Hepacivirus; Hepacivirus C; 
#=GS C1KHZ7/3-181      AC C1KHZ7
#=GS C1KHZ7/3-181      OS Hepacivirus C
#=GS C1KHZ7/3-181      DE NS3 protease
#=GS C1KHZ7/3-181      DR ORG; Viruses; Flaviviridae; Hepacivirus; Hepacivirus C; 
#=GS C1KIH4/3-181      AC C1KIH4
#=GS C1KIH4/3-181      OS Hepacivirus C
#=GS C1KIH4/3-181      DE NS3 protease
#=GS C1KIH4/3-181      DR ORG; Viruses; Flaviviridae; Hepacivirus; Hepacivirus C; 
#=GS A0A0K1D0C1/3-181  AC A0A0K1D0C1
#=GS A0A0K1D0C1/3-181  OS Hepacivirus C
#=GS A0A0K1D0C1/3-181  DE Nonstructural protein NS3
#=GS A0A0K1D0C1/3-181  DR ORG; Viruses; Flaviviridae; Hepacivirus; Hepacivirus C; 
#=GS B6SBD6/3-181      AC B6SBD6
#=GS B6SBD6/3-181      OS Hepacivirus C
#=GS B6SBD6/3-181      DE Protease-helicase
#=GS B6SBD6/3-181      DR ORG; Viruses; Flaviviridae; Hepacivirus; Hepacivirus C; 
#=GS B6SBF1/3-181      AC B6SBF1
#=GS B6SBF1/3-181      OS Hepacivirus C
#=GS B6SBF1/3-181      DE Protease-helicase
#=GS B6SBF1/3-181      DR ORG; Viruses; Flaviviridae; Hepacivirus; Hepacivirus C; 
#=GS A0A0B4WXA3/3-182  AC A0A0B4WXA3
#=GS A0A0B4WXA3/3-182  OS Hepacivirus C
#=GS A0A0B4WXA3/3-182  DE NS3 protease
#=GS A0A0B4WXA3/3-182  DR ORG; Viruses; Flaviviridae; Hepacivirus; Hepacivirus C; 
#=GS A6N6T5/3-189      AC A6N6T5
#=GS A6N6T5/3-189      OS Hepacivirus C
#=GS A6N6T5/3-189      DE NS3 protease
#=GS A6N6T5/3-189      DR ORG; Viruses; Flaviviridae; Hepacivirus; Hepacivirus C; 
#=GS B6SBF0/3-181      AC B6SBF0
#=GS B6SBF0/3-181      OS Hepacivirus C
#=GS B6SBF0/3-181      DE Protease-helicase
#=GS B6SBF0/3-181      DR ORG; Viruses; Flaviviridae; Hepacivirus; Hepacivirus C; 
#=GF SQ 25
Q91RS4/3-181              ITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTAAQTFLATCINGVCWTVYHGAGTRTIASPKGPVIQMYTNVDQDLVGWPAPQGARSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGHAVGLFRAAVCTRGVAKAVDFIPVENLETTMRS--------
A0A0K1D0A7/3-181          ITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTAAQTFLATCINGVCWTVYHGAGTRTIASPKGPVIQMYTNVDKDLVGWPAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGHAVGIFRAAVCTRGVAKAVDFIPVESLETTMRS--------
C1KIK8/3-181              ITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTAAQTFLATCINGVCWTVYHGAGTRTIASPKGPVIQMYTNVDKDLVGWPAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGHAVGIFRAAVCTRGVAKAVDFIPVESLETTMRS--------
C1KIK7/3-181              ITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTAAQTFLATCINGVCWTVYHGAGTRTIASPKGPVIQMYTNVDKDLVGWPAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGHAVGIFRAAVCTRGVAKAVDFIPVESLETTMRS--------
R9UGL2/3-181              ITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTAAQTFLATCINGVCWTVYHGAGTRTIASPKGPVIQMYTNVDKDLVGWPAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGHAVGIFRAAVCTRGVAKAVDFIPVESLETTMRS--------
A0A0K1D0I6/3-181          ITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTAAQTFLATCINGVCWTVYHGAGTRTIASPKGPVIQMYTNVDKDLVGWPAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGHAVGIFRAAVCTRGVAKAVDFIPVESLETTMRS--------
C1KIC3/3-181              ITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTAAQTFLATCINGVCWTVYHGAGTRTIASPKGPVIQMYTNVDKDLVGWPAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGHAVGIFRAAVCTRGVAKAVDFIPVESLETTMRS--------
A0A0K1CZF9/3-181          ITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTAAQTFLATCINGVCWTVYHGAGTRTIASPKGPVIQMYTNVDKDLVGWPAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGHAVGIFRAAVCTRGVAKAVDFIPVESLETTMRS--------
A0A0K1D0H6/3-181          ITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTAAQTFLATCINGVCWTVYHGAGTRTIASPKGPVIQMYTNVDKDLVGWPAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGHAVGIFRAAVCTRGVAKAVDFIPVESLETTMRS--------
A0A0A7ARQ1/3-181          ITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTAAQTFLATCINGVCWTVYHGAGTRTIASPKGPVIQMYTNVDQDLVGWPAPQGARSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGHAVGLFRAAVCTRGVAKAVDFIPVENLETTMRS--------
A0A0A7AS71/3-181          ITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTAAQTFLATCINGVCWTVYHGAGTRTIASPKGPVIQMYTNVDQDLVGWPAPQGARSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGHAVGLFRAAVCTRGVAKAVDFIPVENLETTMRS--------
A0A0B4WYC6/3-182          ITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTATQTFLATCINGVCWTVYHGAGTRTIASPKGPVIQMYTNVDKDLVGWPAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGHAVGIFRAAVCTRGVAKAVDFIPVESLETTMRSP-------
C1KI12/3-181              ITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTAAQTFLATCINGVCWTVYHGAGTRTIASPKGPVIQMYTNVDQDLVGWPAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGHAVGIFRAAVCTRGVAKAVDFIPVENLETTMRS--------
C1KHN2/3-181              ITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTAAQTFLATCINGVCWTVYHGAGTRTIASPKGPVIQMYTNVDQDLVGWPAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGHAVGIFRAAVCTRGVAKAVDFIPVENLETTMRS--------
C1KHW8/3-181              ITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTAAQTFLATCINGVCWTVYHGAGTRTIASPKGPVIQMYTNVDQDLVGWPAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGHAVGIFRAAVCTRGVAKAVDFIPVENLETTMRS--------
C1KIN4/3-181              ITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTAAQTFLATCINGVCWTVYHGAGTRTIASPKGPVIQMYTNVDQDLVGWPAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGHAVGIFRAAVCTRGVAKAVDFIPVENLETTMRS--------
C1KHW2/3-181              ITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTAAQTFLATCINGVCWTVYHGAGTRTIASPKGPVIQMYTNVDQDLVGWPAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGHAVGIFRAAVCTRGVAKAVDFIPVENLETTMRS--------
C1KHZ7/3-181              ITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTAAQTFLATCINGVCWTVYHGAGTRTIASPKGPVIQMYTNVDQDLVGWPAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGHAVGIFRAAVCTRGVAKAVDFIPVENLETTMRS--------
C1KIH4/3-181              ITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTAAQTFLATCINGVCWTVYHGAGTRTIASPKGPVIQMYTNVDQDLVGWPAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGHAVGIFRAAVCTRGVAKAVDFIPVENLETTMRS--------
A0A0K1D0C1/3-181          ITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTAAQTFLATCINGVCWTVYHGAGTRTIASPKGPVIQMYTNVDQDLVGWPAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGHAVGIFRAAVCTRGVAKAVDFIPVENLETTMRS--------
B6SBD6/3-181              ITAYAQQTRGLLGCIVTSLTGRDKNQVEGEVQIVSTATQAFLATCINGVCWTVYHGAGTRTIASPKGPVIQMYTNVDQDLVGWPAPQGARSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGHAVGIFRAAVCTRGVAKAVDFIPVENLETTMRS--------
B6SBF1/3-181              ITAYTQQTRGLLGCIITSLTGRDKNQVEGEVQVVSTATQTFLATCVNGVCWTVYHGAGTRTLASPRGPVIQMYTNVDQDLVGWPAPQGARSLTPCSCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGHAVGIFRAAVCTRGVAKAVDFIPVENLETTMRS--------
A0A0B4WXA3/3-182          ITAYARCTRRLLPCIITRLTGRDKNHVEGAVQIVSPAAQTFLATCINGVCWTVYHGAGTRTIASSKGPVIQMYTNVDQDLVGWPAPQGARSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGHAVGIFRAAVCTRGVAKAVDFIAEEAVDPPSRSP-------
A6N6T5/3-189              ITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTAAQTFLATCINGVCWTVYHGAGTRTIASSKGPVIQMYTNVDQDLVGWPAPQGARSLTPCTCGSSDLYLVTRHADVIPVRRRGDGRGSLLSPRPISYLKGSSGGPLLCPAGHAVGIFRAAVCTRGVAKAVDFIPVEGLDTTMRSPVFSDNSS
B6SBF0/3-181              ITAYAQQTRGLLGCIITSLTGRDKNQVEGEXQIVSTATQTFLATCINGVCWTVYHGAGTRTIASPKGPVIQMYTNVDQDLVGWPAPQGARSLTPCTCGSSDLYLVTXHADVIPVRRXXXXRGSLLSPRPISYLKGSSGGPLLCPAGHAVGIFRAAVCTRGVAKAVDFIPVENLETTMRS--------
#=GC scorecons            9999876997997998979999999799977989979798999998999999999999999899689999999999979999999999699999989999999999799999999977769999999999999999999999999999998999999999999999997794777779900000000
#=GC scorecons_70         ****************************************************************************************_******************************_***************************************************_*******________
#=GC scorecons_80         ******_******************************_**************************_************_**********_******************************_*************************************************_*_*******________
#=GC scorecons_90         *****__**_**_****_*******_***__****_*_**************************_************_**********_*****************_*********____************************************************__*______**________
//