# STOCKHOLM 1.0
#=GF ID 2.40.10.10/FF/000131
#=GF DE Protease Do-like 9
#=GF AC 2.40.10.10/FF/000131
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 53.227
#=GS O82261/98-201       AC O82261
#=GS O82261/98-201       OS Arabidopsis thaliana
#=GS O82261/98-201       DE Protease Do-like 2, chloroplastic
#=GS O82261/98-201       DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS O82261/98-201       DR GO; GO:0004252; GO:0009507; GO:0009533; GO:0009535; GO:0009570; GO:0009658; GO:0009941; GO:0010206; GO:0030163; 
#=GS Q9FL12/103-211      AC Q9FL12
#=GS Q9FL12/103-211      OS Arabidopsis thaliana
#=GS Q9FL12/103-211      DE Protease Do-like 9
#=GS Q9FL12/103-211      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS Q9FL12/103-211      DR GO; GO:0005515; GO:0005634; GO:0005730; GO:0008236; GO:0009507; 
#=GS A0A178VUR8/98-201   AC A0A178VUR8
#=GS A0A178VUR8/98-201   OS Arabidopsis thaliana
#=GS A0A178VUR8/98-201   DE EMB3117
#=GS A0A178VUR8/98-201   DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS B3H581/97-200       AC B3H581
#=GS B3H581/97-200       OS Arabidopsis thaliana
#=GS B3H581/97-200       DE DEGP protease 2
#=GS B3H581/97-200       DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS A0A3L6PEU8/131-235  AC A0A3L6PEU8
#=GS A0A3L6PEU8/131-235  OS Panicum miliaceum
#=GS A0A3L6PEU8/131-235  DE Protease Do-like 9
#=GS A0A3L6PEU8/131-235  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Paniceae; Panicinae; Panicum; Panicum miliaceum; 
#=GS A0A078ITJ8/98-204   AC A0A078ITJ8
#=GS A0A078ITJ8/98-204   OS Brassica napus
#=GS A0A078ITJ8/98-204   DE BnaCnng24440D protein
#=GS A0A078ITJ8/98-204   DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica napus; 
#=GS V4L9D7/107-212      AC V4L9D7
#=GS V4L9D7/107-212      OS Eutrema salsugineum
#=GS V4L9D7/107-212      DE Uncharacterized protein
#=GS V4L9D7/107-212      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Eutremeae; Eutrema; Eutrema salsugineum; 
#=GS R0GVF3/103-209      AC R0GVF3
#=GS R0GVF3/103-209      OS Capsella rubella
#=GS R0GVF3/103-209      DE Uncharacterized protein
#=GS R0GVF3/103-209      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Capsella; Capsella rubella; 
#=GS A0A3P6CBJ1/98-204   AC A0A3P6CBJ1
#=GS A0A3P6CBJ1/98-204   OS Brassica oleracea
#=GS A0A3P6CBJ1/98-204   DE Uncharacterized protein
#=GS A0A3P6CBJ1/98-204   DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; 
#=GS D7MJB4/102-211      AC D7MJB4
#=GS D7MJB4/102-211      OS Arabidopsis lyrata subsp. lyrata
#=GS D7MJB4/102-211      DE Uncharacterized protein
#=GS D7MJB4/102-211      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; 
#=GS A0A397ZTM2/97-206   AC A0A397ZTM2
#=GS A0A397ZTM2/97-206   OS Brassica rapa
#=GS A0A397ZTM2/97-206   DE Uncharacterized protein
#=GS A0A397ZTM2/97-206   DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica rapa; 
#=GS A0A0D3C030/98-204   AC A0A0D3C030
#=GS A0A0D3C030/98-204   OS Brassica oleracea var. oleracea
#=GS A0A0D3C030/98-204   DE Uncharacterized protein
#=GS A0A0D3C030/98-204   DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; Brassica oleracea var. oleracea; 
#=GS M4E9Z3/98-204       AC M4E9Z3
#=GS M4E9Z3/98-204       OS Brassica rapa subsp. pekinensis
#=GS M4E9Z3/98-204       DE Uncharacterized protein
#=GS M4E9Z3/98-204       DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica rapa; Brassica rapa subsp. pekinensis; 
#=GS A0A2T7E106/130-234  AC A0A2T7E106
#=GS A0A2T7E106/130-234  OS Panicum hallii var. hallii
#=GS A0A2T7E106/130-234  DE Uncharacterized protein
#=GS A0A2T7E106/130-234  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Paniceae; Panicinae; Panicum; Panicum sect. Panicum; Panicum hallii; Panicum hallii var. hallii; 
#=GS A0A2S3HKG4/130-234  AC A0A2S3HKG4
#=GS A0A2S3HKG4/130-234  OS Panicum hallii
#=GS A0A2S3HKG4/130-234  DE Uncharacterized protein
#=GS A0A2S3HKG4/130-234  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Paniceae; Panicinae; Panicum; Panicum sect. Panicum; Panicum hallii; 
#=GS A0A0D3C0V4/97-206   AC A0A0D3C0V4
#=GS A0A0D3C0V4/97-206   OS Brassica oleracea var. oleracea
#=GS A0A0D3C0V4/97-206   DE Uncharacterized protein
#=GS A0A0D3C0V4/97-206   DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; Brassica oleracea var. oleracea; 
#=GS A0A078FSP0/97-206   AC A0A078FSP0
#=GS A0A078FSP0/97-206   OS Brassica napus
#=GS A0A078FSP0/97-206   DE BnaA04g11770D protein
#=GS A0A078FSP0/97-206   DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica napus; 
#=GS A0A078I176/98-204   AC A0A078I176
#=GS A0A078I176/98-204   OS Brassica napus
#=GS A0A078I176/98-204   DE BnaA04g10050D protein
#=GS A0A078I176/98-204   DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica napus; 
#=GS A0A397ZSD5/98-204   AC A0A397ZSD5
#=GS A0A397ZSD5/98-204   OS Brassica rapa
#=GS A0A397ZSD5/98-204   DE Uncharacterized protein
#=GS A0A397ZSD5/98-204   DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica rapa; 
#=GS M4ENG9/98-207       AC M4ENG9
#=GS M4ENG9/98-207       OS Brassica rapa subsp. pekinensis
#=GS M4ENG9/98-207       DE Uncharacterized protein
#=GS M4ENG9/98-207       DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica rapa; Brassica rapa subsp. pekinensis; 
#=GS V4LAN4/107-206      AC V4LAN4
#=GS V4LAN4/107-206      OS Eutrema salsugineum
#=GS V4LAN4/107-206      DE Uncharacterized protein
#=GS V4LAN4/107-206      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Eutremeae; Eutrema; Eutrema salsugineum; 
#=GS D7LHE0/106-207      AC D7LHE0
#=GS D7LHE0/106-207      OS Arabidopsis lyrata subsp. lyrata
#=GS D7LHE0/106-207      DE Uncharacterized protein
#=GS D7LHE0/106-207      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; 
#=GS R0G0L9/96-198       AC R0G0L9
#=GS R0G0L9/96-198       OS Capsella rubella
#=GS R0G0L9/96-198       DE Uncharacterized protein
#=GS R0G0L9/96-198       DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Capsella; Capsella rubella; 
#=GF SQ 23
O82261/98-201               FSRDQQTDPAKIHD---------ASFLNAVVKVYCTHTAPDYSLPWQKQRQFTSTGS-------AFMIGDGKLLTNAHCVEHDTQVKVKRRGDDRKYVAKVLVRGVDCDIALLSVESEDF
Q9FL12/103-211              -STTTESIPAAPS---WETVVKVVPSMDAVVKVFCVHTEPNFSLPWQRKRQYSSGSS-------GFIIGGRRVLTNAHSVEHHTQVKLKKRGSDTKYLATVLAIGTECDIALLTVTDDEF
A0A178VUR8/98-201           FSRDQQTDPAKIHD---------ASFLNAVVKVYCTHTAPDYSLPWQKQRQFTSTGS-------AFMIGDGKLLTNAHCVEHDTQVKVKRRGDDRKYVAKVLVRGVDCDIALLSVESEDF
B3H581/97-200               FSRDQQTDPAKIHD---------ASFLNAVVKVYCTHTAPDYSLPWQKQRQFTSTGS-------AFMIGDGKLLTNAHCVEHDTQVKVKRRGDDRKYVAKVLVRGVDCDIALLSVESEDF
A0A3L6PEU8/131-235          --------PAAMEPVRWEQVVKVVPSMDAVVKVFCVHTEPNFSLPWQRKRQYSSSSS-------GFIIGGRRVLTNAHSVEHHTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVEDDEF
A0A078ITJ8/98-204           ---TSESIPAAPS---WETVVKVVPSMDAVVKVFCVHTEPNFSLPWQRKRQYSSGSS-------GFIIGGRRVLTNAHSVEHHTQVKLKKRGSDTKYLATVLAIGTECDIALLTVNDDEF
V4L9D7/107-212              ----AESIPAPPS---WETVVKVAPSMDAVVKVFCVHTEPNFSLPWQRKRQYSSGSS-------GFIIGGRRVLTNAHSVEHHTQVKLKKRGSDTKYLATVLAIGTECDIALLTVTDDEF
R0GVF3/103-209              ---ITESIPAAPS---WETVVKVVPSMDAVVKVFCVHTEPNFSLPWQRKRQYSSGSS-------GFIIGGRRVLTNAHSVEHHTQVKLKKRGSDTKYLATVLAIGTECDIALLTVTDDEF
A0A3P6CBJ1/98-204           ---TSESIPAAPS---WETVVKVVPSMDAVVKVFCVHTEPNFSLPWQRKRQYSSGSS-------GFIIGGRRVLTNAHSVEHHTQVKLKKRGSDTKYLATVLAIGTECDIALLTVNDDEF
D7MJB4/102-211              VSATTESIPAAPS---WETVVKVVPSMDAVVKVFCVHTEPNFSLPWQRKRQYSSGSS-------GFIIGGRRVLTNAHSVEHHTQVKLKKRGSDTKYLATVLAIGTECDIALLTVTDDEF
A0A397ZTM2/97-206           AAATAESTPAAPS---WETVVKVVPSMDAVVKVFCVHTDPNFSLPWQMKRQYSSGSS-------GFIIGGRRVLTNAHSVEHHTQVKLKKRGSDTKYLATVLAIGTECDIALLTVSDDEF
A0A0D3C030/98-204           ---TSESIPAAPS---WETVVKVVPSMDAVVKVFCVHTEPNFSLPWQRKRQYSSGSS-------GFIIGGRRVLTNAHSVEHHTQVKLKKRGSDTKYLATVLAIGTECDIALLTVNDDEF
M4E9Z3/98-204               ---TSESIPAAPS---WETVVKVVPSMDAVVKVFCVHTEPNFSLPWQRKRQYSSGSS-------GFIIGGRRVLTNAHSVEHHTQVKLKKRGSDTKYLATVLAIGTECDIALLTVNDDEF
A0A2T7E106/130-234          --------PAAMEPVRWEQVVKVVPSMDAVVKVFCVHTEPNFSLPWQRKRQYSSSSS-------GFIIGGRRVLTNAHSVEHHTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVEDDEF
A0A2S3HKG4/130-234          --------PAAMEPVRWEQVVKVVPSMDAVVKVFCVHTEPNFSLPWQRKRQYSSSSS-------GFIIGGRRVLTNAHSVEHHTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVEDDEF
A0A0D3C0V4/97-206           AAATSESTPAAPS---WETVVKVVPSMDAVVKVFCVHTDPNFSLPWQMKRQYSSGSS-------GFIIGGRRVLTNAHSVEHHTQVKLKKRGSDTKYLATVLAIGTECDIALLTVSDDEF
A0A078FSP0/97-206           AAATAESTPAAPS---WETVVKVVPSMDAVVKVFCVHTDPNFSLPWQMKRQYSSGSS-------GFIIGGRRVLTNAHSVEHHTQVKLKKRGSDTKYLATVLAIGTECDIALLTVSDDEF
A0A078I176/98-204           ---TSESIPAAPS---WETVVKVVPSMDAVVKVFCVHTEPNFSLPWQRKRQYSSGSS-------GFIIGGRRVLTNAHSVEHHTQVKLKKRGSDTKYLATVLAIGTECDIALLTVNDDEF
A0A397ZSD5/98-204           ---TSESIPAAPS---WETVVKVVPSMDAVVKVFCVHTEPNFSLPWQRKRQYSSGSS-------GFIIGGRRVLTNAHSVEHHTQVKLKKRGSDTKYLATVLAIGTECDIALLTVNDDEF
M4ENG9/98-207               AAATAESTPAAPS---WETVVKVVPSMDAVVKVFCVHTDPNFSLPWQMKRQYSSGSS-------GFIIGGRRVLTNAHSVEHHTQVKLKKRGSDTKYLATVLAIGTECDIALLTVSDDEF
V4LAN4/107-206              ----QQTDPGKIHD---------ASFLNAVVKVYCTHTAPDYSLPWQKQRQFTSTGS-------AFMIGDGKLLTNAHCVEHDTQVKVKRRGDDRKYVAKVLVRGVDCDIALLSVESEDF
D7LHE0/106-207              ---------GKIHD---------ASFLNAVVKVYCTHTAPDYSLPWQKQRQFTSTGRHVFFIHIAFMIGDGKLLTNAHCVEHDTQVKVKRRGDDRKYVAKVLVRGVDCDIALLSVESEDF
R0G0L9/96-198               -SRDQQTDPAKIHD---------ASFLNAVVKVYCTHTAPDYSLPWQKQRQFTSTGS-------AFMIGDGKLLTNAHCVEHDTQVKVKRRGDDRKYVAKVLVRGVDCDIALLSVESEDF
#=GC scorecons              011223327754410022222226656699999795995967999995699769567000000069699657699999699959999697995959969599649579999896955779
#=GC scorecons_70           ________**________________*********_**_********_****_*__*________****__*******_***_*********_*_****_**__*_*******_*__***
#=GC scorecons_80           ________**__________________*******_**_*_******__***_*__*________*_**____*****_***_****_*_**_*_**_*_**__*__******_*____*
#=GC scorecons_90           ____________________________*****_*_**_*__*****__**__*___________*_**____*****_***_****_*_**_*_**_*_**__*__****_*_*____*
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