# STOCKHOLM 1.0
#=GF ID 2.40.10.10/FF/000115
#=GF DE ORF1a polyprotein
#=GF AC 2.40.10.10/FF/000115
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 28.028
#=GS Q04561/1774-1846      AC Q04561
#=GS Q04561/1774-1846      OS Lelystad virus
#=GS Q04561/1774-1846      DE Replicase polyprotein 1ab
#=GS Q04561/1774-1846      DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Variarterivirinae; Betaarterivirus; Eurpobartevirus; Betaarterivirus suid 1; 
#=GS Q04561/1774-1846      DR EC; 2.7.7.48; 3.4.19.12; 3.6.4.12; 3.6.4.13; 
#=GS A0MD28/1757-1829      AC A0MD28
#=GS A0MD28/1757-1829      OS PRRSV SD 01-08
#=GS A0MD28/1757-1829      DE Replicase polyprotein 1ab
#=GS A0MD28/1757-1829      DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS A0MD28/1757-1829      DR EC; 2.7.7.48; 3.4.19.12; 3.6.4.12; 3.6.4.13; 
#=GS A0A1P8NRR6/1769-1841  AC A0A1P8NRR6
#=GS A0A1P8NRR6/1769-1841  OS Porcine reproductive and respiratory syndrome virus
#=GS A0A1P8NRR6/1769-1841  DE ORF1a
#=GS A0A1P8NRR6/1769-1841  DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS U3NGL1/1733-1805      AC U3NGL1
#=GS U3NGL1/1733-1805      OS Porcine reproductive and respiratory syndrome virus
#=GS U3NGL1/1733-1805      DE ORF1a polyprotein
#=GS U3NGL1/1733-1805      DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS A0A0U2YQP0/1761-1833  AC A0A0U2YQP0
#=GS A0A0U2YQP0/1761-1833  OS Porcine reproductive and respiratory syndrome virus
#=GS A0A0U2YQP0/1761-1833  DE Polyprotein 1a
#=GS A0A0U2YQP0/1761-1833  DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS A0A1P8NRK3/1758-1830  AC A0A1P8NRK3
#=GS A0A1P8NRK3/1758-1830  OS Porcine reproductive and respiratory syndrome virus
#=GS A0A1P8NRK3/1758-1830  DE ORF1a
#=GS A0A1P8NRK3/1758-1830  DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS Q6UN13/1757-1829      AC Q6UN13
#=GS Q6UN13/1757-1829      OS Porcine reproductive and respiratory syndrome virus
#=GS Q6UN13/1757-1829      DE Replicase polyprotein 1A
#=GS Q6UN13/1757-1829      DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS G0TEG8/1746-1818      AC G0TEG8
#=GS G0TEG8/1746-1818      OS Porcine reproductive and respiratory syndrome virus
#=GS G0TEG8/1746-1818      DE Replicase polyprotein 1a
#=GS G0TEG8/1746-1818      DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS V5N5M1/1774-1846      AC V5N5M1
#=GS V5N5M1/1774-1846      OS Porcine reproductive and respiratory syndrome virus
#=GS V5N5M1/1774-1846      DE Polyprotein 1a
#=GS V5N5M1/1774-1846      DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS A0A1P8NRL0/1775-1847  AC A0A1P8NRL0
#=GS A0A1P8NRL0/1775-1847  OS Porcine reproductive and respiratory syndrome virus
#=GS A0A1P8NRL0/1775-1847  DE ORF1a
#=GS A0A1P8NRL0/1775-1847  DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS A0A1P8NRJ8/1670-1741  AC A0A1P8NRJ8
#=GS A0A1P8NRJ8/1670-1741  OS Porcine reproductive and respiratory syndrome virus
#=GS A0A1P8NRJ8/1670-1741  DE ORF1a
#=GS A0A1P8NRJ8/1670-1741  DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS A0A1L3H034/1774-1846  AC A0A1L3H034
#=GS A0A1L3H034/1774-1846  OS Porcine reproductive and respiratory syndrome virus
#=GS A0A1L3H034/1774-1846  DE Polyprotein 1a
#=GS A0A1L3H034/1774-1846  DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS A0A077DAD8/1769-1841  AC A0A077DAD8
#=GS A0A077DAD8/1769-1841  OS Porcine reproductive and respiratory syndrome virus
#=GS A0A077DAD8/1769-1841  DE Nonstructural protein
#=GS A0A077DAD8/1769-1841  DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS A0A0K2DRE0/1754-1826  AC A0A0K2DRE0
#=GS A0A0K2DRE0/1754-1826  OS Porcine reproductive and respiratory syndrome virus
#=GS A0A0K2DRE0/1754-1826  DE ORF1a
#=GS A0A0K2DRE0/1754-1826  DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS A0A1P8NRD2/1764-1836  AC A0A1P8NRD2
#=GS A0A1P8NRD2/1764-1836  OS Porcine reproductive and respiratory syndrome virus
#=GS A0A1P8NRD2/1764-1836  DE ORF1a
#=GS A0A1P8NRD2/1764-1836  DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS A0A0S2IKF5/1749-1821  AC A0A0S2IKF5
#=GS A0A0S2IKF5/1749-1821  OS Porcine reproductive and respiratory syndrome virus
#=GS A0A0S2IKF5/1749-1821  DE ORF1a
#=GS A0A0S2IKF5/1749-1821  DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS A0A140GJK3/1719-1791  AC A0A140GJK3
#=GS A0A140GJK3/1719-1791  OS Porcine reproductive and respiratory syndrome virus
#=GS A0A140GJK3/1719-1791  DE Pp1a
#=GS A0A140GJK3/1719-1791  DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS A7UKW2/1774-1846      AC A7UKW2
#=GS A7UKW2/1774-1846      OS Porcine reproductive and respiratory syndrome virus
#=GS A7UKW2/1774-1846      DE Polyprotein
#=GS A7UKW2/1774-1846      DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS A0A0U2M4P4/1773-1845  AC A0A0U2M4P4
#=GS A0A0U2M4P4/1773-1845  OS Porcine reproductive and respiratory syndrome virus
#=GS A0A0U2M4P4/1773-1845  DE Polyprotein 1a
#=GS A0A0U2M4P4/1773-1845  DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS A0A1P8NRE1/1772-1844  AC A0A1P8NRE1
#=GS A0A1P8NRE1/1772-1844  OS Porcine reproductive and respiratory syndrome virus
#=GS A0A1P8NRE1/1772-1844  DE ORF1a
#=GS A0A1P8NRE1/1772-1844  DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS A0A0U3AH00/1773-1845  AC A0A0U3AH00
#=GS A0A0U3AH00/1773-1845  OS Porcine reproductive and respiratory syndrome virus
#=GS A0A0U3AH00/1773-1845  DE Polyprotein 1a
#=GS A0A0U3AH00/1773-1845  DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS A0A1P8NRG7/1724-1796  AC A0A1P8NRG7
#=GS A0A1P8NRG7/1724-1796  OS Porcine reproductive and respiratory syndrome virus
#=GS A0A1P8NRG7/1724-1796  DE ORF1a
#=GS A0A1P8NRG7/1724-1796  DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS A0A1P8NRM4/1758-1830  AC A0A1P8NRM4
#=GS A0A1P8NRM4/1758-1830  OS Porcine reproductive and respiratory syndrome virus
#=GS A0A1P8NRM4/1758-1830  DE ORF1a
#=GS A0A1P8NRM4/1758-1830  DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS E9P7V6/1749-1821      AC E9P7V6
#=GS E9P7V6/1749-1821      OS Porcine reproductive and respiratory syndrome virus
#=GS E9P7V6/1749-1821      DE ORF1a polyprotein
#=GS E9P7V6/1749-1821      DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS D0V780/1769-1841      AC D0V780
#=GS D0V780/1769-1841      OS Porcine reproductive and respiratory syndrome virus
#=GS D0V780/1769-1841      DE Replicase polyprotein 1a
#=GS D0V780/1769-1841      DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS A0A1U9X9Q8/1773-1845  AC A0A1U9X9Q8
#=GS A0A1U9X9Q8/1773-1845  OS Porcine reproductive and respiratory syndrome virus
#=GS A0A1U9X9Q8/1773-1845  DE Replicase polyprotein 1a
#=GS A0A1U9X9Q8/1773-1845  DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS A0A1P8NRH6/1741-1813  AC A0A1P8NRH6
#=GS A0A1P8NRH6/1741-1813  OS Porcine reproductive and respiratory syndrome virus
#=GS A0A1P8NRH6/1741-1813  DE ORF1a
#=GS A0A1P8NRH6/1741-1813  DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS E9P7U0/1700-1772      AC E9P7U0
#=GS E9P7U0/1700-1772      OS Porcine reproductive and respiratory syndrome virus
#=GS E9P7U0/1700-1772      DE ORF1a polyprotein
#=GS E9P7U0/1700-1772      DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS E9P7Y0/1774-1846      AC E9P7Y0
#=GS E9P7Y0/1774-1846      OS Porcine reproductive and respiratory syndrome virus
#=GS E9P7Y0/1774-1846      DE ORF1a polyprotein
#=GS E9P7Y0/1774-1846      DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS A0A2D3HIT2/1621-1693  AC A0A2D3HIT2
#=GS A0A2D3HIT2/1621-1693  OS Porcine reproductive and respiratory syndrome virus 1
#=GS A0A2D3HIT2/1621-1693  DE ORF1a polyprotein
#=GS A0A2D3HIT2/1621-1693  DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Variarterivirinae; Betaarterivirus; Eurpobartevirus; Betaarterivirus suid 1; 
#=GS A0A0U2V7J4/1727-1799  AC A0A0U2V7J4
#=GS A0A0U2V7J4/1727-1799  OS Porcine reproductive and respiratory syndrome virus
#=GS A0A0U2V7J4/1727-1799  DE ORF1ab protein
#=GS A0A0U2V7J4/1727-1799  DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GF SQ 31
Q04561/1774-1846              KVAKGYRGRAYWQTSTGVEPGIIGEGFAFCFTNCGDSGSPVISESGDLIGIHTGSNKLGSGLVTTPEGETCTI
A0MD28/1757-1829              KVAKGYRGRAYWQTSTGVEPGVIGEGFAFCFTNCGDSGSPVISESGDLIGIHTGSNKLGSGLVTTPEGETCAI
A0A1P8NRR6/1769-1841          KVAKGYRGRAYWQTSTGVEPGIIGEGFAFCFTNCGDSGSPVISESGDLIGIHTGSNKLGSGLVTTPEGETCTI
U3NGL1/1733-1805              KVAKGYLGRAYWQTSTGVEPGVVGKGFAFCFTNCGDSGSPVISESGDLIGIHTGSNKLGSGLVTTPEGETCTI
A0A0U2YQP0/1761-1833          KIAKRYRGRAYWQTSTGVEPGIIGEGFAFCFTSCGDSGSPVISESGDLVGIHTGSNKLGSGLVTTPEGETCSI
A0A1P8NRK3/1758-1830          KVAKGYRGRAYWQTSTGVEPGVIGEGFAFCFTNCGDSGSPVISESGDLIGIHTGSNKLGSGLVTTPEGETCAI
Q6UN13/1757-1829              KVAKGYRGRAYWQTSTGVEPGIIGEGFAFCFTNCGDSGSPVISESGDLIGIHTGSNKLGSGLVTTPEGETCAI
G0TEG8/1746-1818              NVAKGYCGRAYWQTSTGVEPGIIGNGFAFCFTNCGDSGSPVISETGDLIGIHTGSNKLGSGLVTTPAGETCAI
V5N5M1/1774-1846              KVAKRYRGRAYWQTSSGVEPGIIGEGFAFCFTNCGDSGSPVISETGDLVGIHTGSNKLGSGLVTTPEGETCSI
A0A1P8NRL0/1775-1847          KIARGYRGRAYWQTSTGVEPGIIGEGFAFCFTNCGDSGSPVISESGDLIGIHTGSNKLGSGLVTTPDGETCSI
A0A1P8NRJ8/1670-1741          -VVKGYRGRAYWQTSTGVEPGIIGEGFAFCFTNCGDSGSPVISESGDLIGIHTGSNKLGSGLVTTPNGETCSI
A0A1L3H034/1774-1846          KIAKGYRGRAYWQTSTGVEPGVVGEGFAFCFTNCGDSGSPVISESGDLIGIHTGSNKLGSGLVTTPEGETCTI
A0A077DAD8/1769-1841          KVAKGYRGRAYWQTSTGVEPGVIGEGFAFCFTNCGDSGSPVISESGDLVGIHTGSNKLGSGLVTTPEGETCTI
A0A0K2DRE0/1754-1826          KVSKRYRGRAYWQTSTGVEPGIIGEGFAFCFTNCGDSGSPVISEAGDLIGIHTGSNKLGSGLVTTPEGETCSI
A0A1P8NRD2/1764-1836          KVVKRYRGRAYWQTSTGVEPGVIGEGFAFCFTNCGDSGSPVISESGDLIGIHTGSNKLGSGLVTTPEGETCSI
A0A0S2IKF5/1749-1821          KIAKGYRGRAYWQTSTGVEPGVVGNGFAFCFTNCGDSGSPVISESGDLIGIHTGSNKLGSGLVTTPEGETCTI
A0A140GJK3/1719-1791          EVAKGYRGRAYWQTSTGVEPGIIGDGFAFCFTNCGDSGSPVISESGDLIGIHTGSNKLGSGLVTTPEGETCTI
A7UKW2/1774-1846              KVAKGYRGRAYWQTSTGVEPGVIGNGFAFCFTNCGDSGSPVISESGDLIGIHTGSNKLGSGLVTTPEGETCTI
A0A0U2M4P4/1773-1845          KIAKRYRGRAYWQTSTGVEPGVIGEGFAFCFTNCGDSGSPVISEAGDLIGIHTGSNKLGSGLVTTPEGETCSI
A0A1P8NRE1/1772-1844          KVTKGYRGRAYWQTSTGVEPGIIGEGFAFCFTNCGDSGSPVVSESGDLIGIHTGSNKLGSGLVTTPEGETCSI
A0A0U3AH00/1773-1845          KIAKRYRGRAYWQTSTGVEPGIVGEGFAFCFTNCGDSGSPVISEAGDLIGIHTGSNKLGSGLVTTPEGETCSI
A0A1P8NRG7/1724-1796          KVARGYRGRAYWQTSTGVEPGIIGEGFAFCFTNCGDSGSPVISEAGDLVGIHTGSNKLGSGLVTTPEGETCTI
A0A1P8NRM4/1758-1830          KVVKGYRGRAYWQTSTGVEPGIIGEGFAFCFTNCGDSGSPVISESGDLIGIHTGSNKLGSGLVTTPEGETCTI
E9P7V6/1749-1821              KVAKRYRGRAYWQTSTGVEPGIIGEGFAFCFTNCGDSGSPVISESGDLIGIHTGSNKLGSGLVTTPEGETCSI
D0V780/1769-1841              KVAKGYRGRAYWQTSTGVEPGVIGEGFAFCFTSCGDSGSPVISESGDLVGIHTGSNKLGSGLVTTPEGETCSI
A0A1U9X9Q8/1773-1845          KVVKGYRGRAYWQTSTGVEPGIIGEGFAFCFTNCGDSGSPVISESGDLIGIHTGSNKLGSGLVTTPEGETCTI
A0A1P8NRH6/1741-1813          KVAKGYRGRAYWQTSTGVEPGIIGEGFAFCFTNCGDSGSPVISESGDLIGIHTGSNKLGSGLVTTPEGETCSI
E9P7U0/1700-1772              KIAHGYRGRAYWQTSTGVEPGVIGEGFAFCFTNCGDSGSPVISESGDLIGIHTGSNKLGSGLVTTPDGETCTI
E9P7Y0/1774-1846              KVAKGYRGRAYWQTSTGVEPGIVGEGFAFCFTNCGDSGSPVISESGDLVGIHTGSNKLGSGLVTTPEGETCSI
A0A2D3HIT2/1621-1693          KVAKGYRGRAYWQTSTGVEPGVIGEGFAFCFTNCGDSGSPVISETGDLIGVHTGSNKLGSGLVTTPEGETCSI
A0A0U2V7J4/1727-1799          KIAKGYRGRAYWQTSTGVEPGIMGEGFAFCFTNCGDSGSPVISEAGDLIGVHTGSNKLGSGLVTTPEGETCSI
#=GC scorecons                7778697999999998999997797999999989999999989969997989999999999999997999959
#=GC scorecons_70             ***********************************************************************_*
#=GC scorecons_80             **_*_***************************************_**************************_*
#=GC scorecons_90             ___*_*_**************__*_*******************_***_*****************_****_*
//