# STOCKHOLM 1.0 #=GF ID 2.30.30.850/FF/000001 #=GF DE Gag-Pol polyprotein #=GF AC 2.30.30.850/FF/000001 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 36.947 #=GS P10400/33-120 AC P10400 #=GS P10400/33-120 OS Mus musculus #=GS P10400/33-120 DE Retrovirus-related Pol polyprotein #=GS P10400/33-120 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; #=GS P10400/33-120 DR EC; 2.7.7.49; #=GS P03355/1652-1738 AC P03355 #=GS P03355/1652-1738 OS Moloney murine leukemia virus isolate Shinnick #=GS P03355/1652-1738 DE Gag-Pol polyprotein #=GS P03355/1652-1738 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; #=GS P03355/1652-1738 DR GO; GO:0003677; GO:0006308; GO:0032993; GO:0044824; GO:0044826; #=GS P03355/1652-1738 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS P31795/498-581 AC P31795 #=GS P31795/498-581 OS Radiation murine leukemia virus (strain Kaplan) #=GS P31795/498-581 DE Pol polyprotein #=GS P31795/498-581 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; #=GS P31795/498-581 DR EC; 2.7.7.49; 3.1.26.4; #=GS A1Z651/1650-1733 AC A1Z651 #=GS A1Z651/1650-1733 OS Xenotropic MuLV-related virus VP62 #=GS A1Z651/1650-1733 DE Gag-Pol polyprotein #=GS A1Z651/1650-1733 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia-related retroviruses; #=GS A1Z651/1650-1733 DR GO; GO:0042802; #=GS A1Z651/1650-1733 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS Q8UN00/1652-1738 AC Q8UN00 #=GS Q8UN00/1652-1738 OS Moloney murine leukemia virus #=GS Q8UN00/1652-1738 DE Pr180 Gag-Pro-Pol polyprotein #=GS Q8UN00/1652-1738 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; #=GS Q8UN00/1652-1738 DR GO; GO:0005515; #=GS Q80ST7/15-102 AC Q80ST7 #=GS Q80ST7/15-102 OS Mus musculus #=GS Q80ST7/15-102 DE Integrase #=GS Q80ST7/15-102 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; #=GS Q61870/18-105 AC Q61870 #=GS Q61870/18-105 OS Mus musculus #=GS Q61870/18-105 DE Pol protein #=GS Q61870/18-105 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; #=GS Q80ST3/15-102 AC Q80ST3 #=GS Q80ST3/15-102 OS Mus musculus #=GS Q80ST3/15-102 DE Integrase #=GS Q80ST3/15-102 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; #=GS Q61530/322-409 AC Q61530 #=GS Q61530/322-409 OS Mus musculus #=GS Q61530/322-409 DE Integrase (409 AA) #=GS Q61530/322-409 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; #=GS P03358/29-116 AC P03358 #=GS P03358/29-116 OS Rauscher spleen focus-forming virus #=GS P03358/29-116 DE Pol polyprotein #=GS P03358/29-116 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Spleen focus-forming virus; #=GS Q2F7J3/1650-1733 AC Q2F7J3 #=GS Q2F7J3/1650-1733 OS Xenotropic MuLV-related virus VP35 #=GS Q2F7J3/1650-1733 DE Gag-Pol polyprotein #=GS Q2F7J3/1650-1733 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia-related retroviruses; #=GS Q2F7J3/1650-1733 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS Q2F7J0/1650-1733 AC Q2F7J0 #=GS Q2F7J0/1650-1733 OS Xenotropic MuLV-related virus VP42 #=GS Q2F7J0/1650-1733 DE Gag-Pol polyprotein #=GS Q2F7J0/1650-1733 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia-related retroviruses; #=GS Q2F7J0/1650-1733 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS D0UFA3/1650-1733 AC D0UFA3 #=GS D0UFA3/1650-1733 OS Xenotropic MuLV-related virus #=GS D0UFA3/1650-1733 DE Putative gag-pro-pol polyprotein #=GS D0UFA3/1650-1733 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia-related retroviruses; #=GS D0UFA3/1650-1733 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS P03356/1651-1734 AC P03356 #=GS P03356/1651-1734 OS AKR (endogenous) murine leukemia virus #=GS P03356/1651-1734 DE Gag-Pol polyprotein #=GS P03356/1651-1734 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; #=GS P03356/1651-1734 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS Q7SVK7/1651-1734 AC Q7SVK7 #=GS Q7SVK7/1651-1734 OS Murine leukemia virus (strain BM5 ECO) #=GS Q7SVK7/1651-1734 DE Gag-pol polyprotein #=GS Q7SVK7/1651-1734 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; #=GS Q7SVK7/1651-1734 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS P11227/1651-1734 AC P11227 #=GS P11227/1651-1734 OS Radiation murine leukemia virus #=GS P11227/1651-1734 DE Gag-Pol polyprotein #=GS P11227/1651-1734 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; #=GS P11227/1651-1734 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS P16103/69-156 AC P16103 #=GS P16103/69-156 OS Mink cell focus-forming murine leukemia virus (ISOLATE CI-3) #=GS P16103/69-156 DE Gag-Pol polyprotein #=GS P16103/69-156 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; #=GS Q83367/146-233 AC Q83367 #=GS Q83367/146-233 OS Murine leukemia virus #=GS Q83367/146-233 DE Reverse transcriptase #=GS Q83367/146-233 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; #=GS D0UFA9/302-385 AC D0UFA9 #=GS D0UFA9/302-385 OS Xenotropic MuLV-related virus #=GS D0UFA9/302-385 DE Putative gag polyprotein #=GS D0UFA9/302-385 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia-related retroviruses; #=GS Q9E7M1/1650-1733 AC Q9E7M1 #=GS Q9E7M1/1650-1733 OS DG-75 Murine leukemia virus #=GS Q9E7M1/1650-1733 DE Putative gag-pro-pol polyprotein #=GS Q9E7M1/1650-1733 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; #=GS Q90RL4/1113-1196 AC Q90RL4 #=GS Q90RL4/1113-1196 OS Murine leukemia virus #=GS Q90RL4/1113-1196 DE Pol protein #=GS Q90RL4/1113-1196 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; #=GS Q60FS6/1113-1199 AC Q60FS6 #=GS Q60FS6/1113-1199 OS Murine leukemia virus #=GS Q60FS6/1113-1199 DE POL polyprotein #=GS Q60FS6/1113-1199 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; #=GF SQ 22 P10400/33-120 VIPHPFRVGDTVWVRRHQTKNLEPRWKGPYTVLLTTPTALKVDGIAAWIHAAHVKAATTPPAGTASGPTWKVQRSQNPLKIRLTRGAP P03355/1652-1738 VVPHPYRVGDTVWVRRHQTKNLEPRWKGPYTVLLTTPTALKVDGIAAWIHAAHVKAADP-GGGPSSRLTWRVQRSQNPLKIRLTREAP P31795/498-581 VIPHPFRVGDTVWVRRHQTKNLEPRWKGPYTVLLTTPTALKVDGISAWIHAAHVKAATTPPI----RPSWRVQRSQNPLKIRLTRGAP A1Z651/1650-1733 VIPHPFRVGDAVWVRRHQTKNLEPRWKGPYTVLLTTPTALKVDGISAWIHAAHVKAATTPPAGTA----WKVQRSQNPLKIRLTRGAP Q8UN00/1652-1738 VVPHPYRVGDTVWVRRHQTKNLEPRWKGPYTVLLTTPTALKVDGIAAWIHAAHVKAADP-GGGPSSRLTWRVQRSQNPLKIRLTREAP Q80ST7/15-102 VIPHPFRVGDTVWVRRHQTKNLEPRWKGPYTVLLTTPTALKVDGIAAWIHAAHIKAATTPPAGTASGPTWKVQRSQNPLKIRLTRGAP Q61870/18-105 VIPHPFRVGDTVWVRRHQTKNLEPRWKGPYTVLLTTPTALKVDGIAAWIHAAHVKAATTPPAGTASGPTWKVQRSQNPLKIRLTRGPP Q80ST3/15-102 VIPHPFRVGDTVWVRRHQTKNLEPRWKGPYTVLLTTPTALKVDGIAAWIHAAHVKAATTPPAGTASGPTWKVQRSQNPLKIRLTRGAP Q61530/322-409 VIPHPFLVGDTVWVRRHQTKNLEPRWKGPYTVLLTTPTALKVDGIAAWIHAAHVKAATTPPAGTASGPTWKVQRSQNPLKIRLTRGPP P03358/29-116 IVPHPFRLGDTVWVRRHQTNNLQPRWKAPYTVLLTTPTALKVDGIAAWIHAAHVKAATTPPAGTASGPTWKVQRSQNPLKIRLTRGAP Q2F7J3/1650-1733 VIPHPFRVGDAVWVRRHQTKNLEPRWKGPYTVLLTTPTALKVDGISAWIHAAHVKAATTPPAGTA----WKVQRSQNPLKIRLTRGAP Q2F7J0/1650-1733 VIPHPFRVGDAVWVRRHQTKNLEPRWKGPYTVLLTTPTALKVDGISAWIHAAHVKAATTPPAGTA----WKVQRSQNPLKIRLTRGAP D0UFA3/1650-1733 VIPHPFRVGDAVWVRRHQTKNLEPRWKGPYTVLLTTPTALKVDGISAWIHAAHVKAATTPPAGTA----WKVQRSQNPLKIRLTRGAP P03356/1651-1734 VIPHPFRIGDSVWVRRHQTKNLEPRWKGPYTVLLTTPTALKVDGISAWIHAAHVKAATTPPI----KPSWRVQRSQNPLKIRLTRGAP Q7SVK7/1651-1734 VIPHPFRIGDSVWVRRHQTKNLEPRWKGPYTVLLTTPTALKVDGISAWIHAAHVKAATTPPI----KPSWRVQRSQNPLKIRLTRGAP P11227/1651-1734 VIPHPFRVGDTVWVRRHQTKNLEPRWKGPYTVLLTTPTALKVDGISAWIHAAHVKAATTPPI----RPSWRVQRSQNPLKIRLTRGAP P16103/69-156 VIPHPFRTGDSVWVRRHQTKNSEPRWKGPYTVLLTTPTALKVDGIAAWIHAAHVKAATTPPAGTASGPTWKVQRSQNPLKIRLTRGAP Q83367/146-233 VIPHPFRVGDTVWVRRHQTKNLEPRWKGPYTVLLTTPTALKVDGIAAWIHAAHVKAATTPPAGTASGPTWKVQRSQNPLKIRLTRGSP D0UFA9/302-385 VIPHPFRVGDAVWVRRHQTKNLEPRWKGPYTVLLTTPTALKVDGISAWIHAAHVKAATTPPAGTA----WKVQRSQNPLKIRLTRGAP Q9E7M1/1650-1733 VIPHPFRVGDAVWVRRHQTKNLEPRWKGPYTVLLTTPTALKVDGISAWIHAAHVKAATTPPAGTA----WKVQRSQNPLKIRLTRGAP Q90RL4/1113-1196 VIPHPFRIGDSVWVRRHQTKNLEPRWKGPYTVLLTTPTALKVDGISAWIHAAHVKAATTPPI----KPSWRVQRSQNPLKIRLTRGAP Q60FS6/1113-1199 VVPHPYQVGDTVWVRRHQTKNLEPRWKGPYTVLLTTPTALKVDGIAAWVHAAHVKAANT-GSGPSSGLTWRVQRSQNPLKIRLTRKAP #=GC scorecons 8799977799599999999898899998999999999999999996998999989996756543322339799999999999999679 #=GC scorecons_70 **********_**********************************_*************_*________******************* #=GC scorecons_80 *******_**_**********************************_***********_*__________*_**************_** #=GC scorecons_90 *_***___**_**********************************_***********____________*_**************__* //