# STOCKHOLM 1.0 #=GF ID 2.30.30.100/FF/000058 #=GF DE Small nuclear ribonucleoprotein Sm D3 #=GF AC 2.30.30.100/FF/000058 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 89.927 #=GS Q580B7/1-85 AC Q580B7 #=GS Q580B7/1-85 OS Trypanosoma brucei brucei TREU927 #=GS Q580B7/1-85 DE Small nuclear ribonucleoprotein SmD3, putative #=GS Q580B7/1-85 DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanozoon; Trypanosoma brucei; Trypanosoma brucei brucei; #=GS Q580B7/1-85 DR GO; GO:0000365; GO:0000375; GO:0005634; GO:0005682; GO:0005685; GO:0005730; GO:0006397; GO:0008380; GO:0030532; GO:0071024; GO:0097525; #=GS Q4Q2F6/3-83 AC Q4Q2F6 #=GS Q4Q2F6/3-83 OS Leishmania major #=GS Q4Q2F6/3-83 DE Small nuclear ribonucleoprotein Sm D3 #=GS Q4Q2F6/3-83 DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Leishmania; Leishmania major species complex; Leishmania major; #=GS Q4Q2F6/3-83 DR GO; GO:0005682; GO:0005685; GO:0005730; GO:0071024; #=GS Q4Q224/7-91 AC Q4Q224 #=GS Q4Q224/7-91 OS Leishmania major #=GS Q4Q224/7-91 DE Putative small nuclear ribonucleaoprotein #=GS Q4Q224/7-91 DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Leishmania; Leishmania major species complex; Leishmania major; #=GS Q4Q224/7-91 DR GO; GO:0000380; GO:0003723; GO:0005634; GO:0005686; #=GS A8IB31/63-167 AC A8IB31 #=GS A8IB31/63-167 OS Chlamydomonas reinhardtii #=GS A8IB31/63-167 DE Prediceted snRNP core protein #=GS A8IB31/63-167 DR ORG; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas; Chlamydomonas reinhardtii; #=GS A8BZP8/1-84 AC A8BZP8 #=GS A8BZP8/1-84 OS Giardia lamblia ATCC 50803 #=GS A8BZP8/1-84 DE Small nuclear ribonucleoprotein Sm D3, putative #=GS A8BZP8/1-84 DR ORG; Eukaryota; Diplomonadida; Hexamitidae; Giardiinae; Giardia; Giardia intestinalis; #=GS A8BZR3/1-61 AC A8BZR3 #=GS A8BZR3/1-61 OS Giardia lamblia ATCC 50803 #=GS A8BZR3/1-61 DE Small nuclear ribonucleoprotein Sm D3, putative #=GS A8BZR3/1-61 DR ORG; Eukaryota; Diplomonadida; Hexamitidae; Giardiinae; Giardia; Giardia intestinalis; #=GS A9SZC7/1-71 AC A9SZC7 #=GS A9SZC7/1-71 OS Physcomitrella patens #=GS A9SZC7/1-71 DE Small nuclear ribonucleoprotein Sm D3 #=GS A9SZC7/1-71 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella; Physcomitrella patens; #=GS B8CAZ8/73-152 AC B8CAZ8 #=GS B8CAZ8/73-152 OS Thalassiosira pseudonana #=GS B8CAZ8/73-152 DE Small nuclear ribonucleoprotein Sm D3 #=GS B8CAZ8/73-152 DR ORG; Eukaryota; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira; Thalassiosira pseudonana; #=GS A0ED08/2-83 AC A0ED08 #=GS A0ED08/2-83 OS Paramecium tetraurelia #=GS A0ED08/2-83 DE U6 snRNA-associated Sm-like protein LSm4 #=GS A0ED08/2-83 DR ORG; Eukaryota; Ciliophora; Intramacronucleata; Oligohymenophorea; Peniculida; Parameciidae; Paramecium; Paramecium tetraurelia; #=GS A0A1G4IFJ9/1-85 AC A0A1G4IFJ9 #=GS A0A1G4IFJ9/1-85 OS Trypanosoma equiperdum #=GS A0A1G4IFJ9/1-85 DE Small nuclear ribonucleoprotein SmD3, putative #=GS A0A1G4IFJ9/1-85 DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanozoon; Trypanosoma equiperdum; #=GS A4HBA7/3-83 AC A4HBA7 #=GS A4HBA7/3-83 OS Leishmania braziliensis #=GS A4HBA7/3-83 DE Small nuclear ribonucleoprotein Sm D3 #=GS A4HBA7/3-83 DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Viannia; Leishmania braziliensis species complex; Leishmania braziliensis; #=GS C9ZLT9/1-85 AC C9ZLT9 #=GS C9ZLT9/1-85 OS Trypanosoma brucei gambiense DAL972 #=GS C9ZLT9/1-85 DE Small nuclear ribonucleoprotein SmD3, putative #=GS C9ZLT9/1-85 DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanozoon; Trypanosoma brucei; Trypanosoma brucei gambiense; #=GS A0A3L6LAZ7/1-85 AC A0A3L6LAZ7 #=GS A0A3L6LAZ7/1-85 OS Trypanosoma brucei equiperdum #=GS A0A3L6LAZ7/1-85 DE Small nuclear ribonucleoprotein SmD3 #=GS A0A3L6LAZ7/1-85 DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanozoon; Trypanosoma brucei; Trypanosoma brucei equiperdum; #=GS E9BRG5/3-83 AC E9BRG5 #=GS E9BRG5/3-83 OS Leishmania donovani BPK282A1 #=GS E9BRG5/3-83 DE Small nuclear ribonucleoprotein Sm D3 #=GS E9BRG5/3-83 DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Leishmania; Leishmania donovani species complex; Leishmania donovani; #=GS A0A088RPU2/3-83 AC A0A088RPU2 #=GS A0A088RPU2/3-83 OS Leishmania panamensis #=GS A0A088RPU2/3-83 DE Small nuclear ribonucleoprotein Sm D3 #=GS A0A088RPU2/3-83 DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Viannia; Leishmania guyanensis species complex; Leishmania panamensis; #=GS A4IAF5/3-83 AC A4IAF5 #=GS A4IAF5/3-83 OS Leishmania infantum #=GS A4IAF5/3-83 DE Small nuclear ribonucleoprotein Sm D3 #=GS A4IAF5/3-83 DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Leishmania; Leishmania donovani species complex; Leishmania infantum; #=GS A0A1E1IV01/3-83 AC A0A1E1IV01 #=GS A0A1E1IV01/3-83 OS Leishmania guyanensis #=GS A0A1E1IV01/3-83 DE Small nuclear ribonucleoprotein Sm D3 #=GS A0A1E1IV01/3-83 DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Viannia; Leishmania guyanensis species complex; Leishmania guyanensis; #=GS E1F928/1-84 AC E1F928 #=GS E1F928/1-84 OS Giardia lamblia P15 #=GS E1F928/1-84 DE Small nuclear ribonucleoprotein Sm D3, putative #=GS E1F928/1-84 DR ORG; Eukaryota; Diplomonadida; Hexamitidae; Giardiinae; Giardia; Giardia intestinalis; #=GS V6TEB2/1-84 AC V6TEB2 #=GS V6TEB2/1-84 OS Giardia intestinalis #=GS V6TEB2/1-84 DE Small nuclear ribonucleoprotein Sm D3 #=GS V6TEB2/1-84 DR ORG; Eukaryota; Diplomonadida; Hexamitidae; Giardiinae; Giardia; Giardia intestinalis; #=GS A0A3S7X8L1/3-83 AC A0A3S7X8L1 #=GS A0A3S7X8L1/3-83 OS Leishmania donovani #=GS A0A3S7X8L1/3-83 DE Small nuclear ribonucleoprotein Sm D3 #=GS A0A3S7X8L1/3-83 DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Leishmania; Leishmania donovani species complex; Leishmania donovani; #=GS A0A3P3Z586/3-83 AC A0A3P3Z586 #=GS A0A3P3Z586/3-83 OS Leishmania braziliensis MHOM/BR/75/M2904 #=GS A0A3P3Z586/3-83 DE Small nuclear ribonucleoprotein Sm D3 #=GS A0A3P3Z586/3-83 DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Viannia; Leishmania braziliensis species complex; Leishmania braziliensis; #=GS A0CSI7/2-83 AC A0CSI7 #=GS A0CSI7/2-83 OS Paramecium tetraurelia #=GS A0CSI7/2-83 DE U6 snRNA-associated Sm-like protein LSm4 #=GS A0CSI7/2-83 DR ORG; Eukaryota; Ciliophora; Intramacronucleata; Oligohymenophorea; Peniculida; Parameciidae; Paramecium; Paramecium tetraurelia; #=GF SQ 22 Q580B7/1-85 M---NTEGLPLKVLSDAVGTTVSLELKNGELYTGTLSEVV-DNMGVLLTSARKT-----TMAGRE-VDMPKVLVCGTNIVFFQL-PDALRCCPPL------------M Q4Q2F6/3-83 ------ESIPIKVLFDALHLKVSIEVATGEVYHGTVEELQ-NNMNVLLKDATKT-----ARGGKE-TKMDSVFVRGSNIVFFQL-PDALQTSPAL------------- Q4Q224/7-91 ----ATKDIPSSLVFEAMHSRVTIETVEGDVYKGTLAAFDISRGNIELVEVRHQ-----AKDSTF-GFYERVTVRGSKIRIVLL-PPEMKAAPSL------------Q A8IB31/63-167 KLPPRSETTLVCLVKSLIERRVVVELRNDTLVKGQLDDVD-DFLNMTLSDVTFQTLEVSGGSGWG-GGSGPVAVAGRNIRFVHL-PKSLDPARAIEMYVSRQRVMRTK A8BZP8/1-84 ----MTITAPIQLLFEAIDMCVSVETRTGSIYEGKLVSVE-PTLSVTISNCTIT-----HPTGQK-ETAQTVMLRGSEVRFVSV-PNALVDSPVL------------K A8BZR3/1-61 ----MTITAPIQLLFEAIDMCVSVETRTGSIYEGKLVSVE-PTLSVTISNCTIT-----QLRVKR-KQHKRL------------------------------------ A9SZC7/1-71 --------VPLKLLHEGEGHGVTVELKNGDVCRGKLIESE-NNWTLQLDTANFI----FSRTGKE-VKLDSIFIRGRRIKLVLF-----------------------Q B8CAZ8/73-152 LLPLFSSLPPLSL--------PTQQMKNGEIYRGLLLNAE-DTMNMTLSEVVRT-----ARNGQV-SKLPTVYLRGSGVRFIAL-PDLLRNAPAF------------K A0ED08/2-83 -----INIFPLSLLLTAKGSDVVIEVKAGDTYDGKLELLD-KFMNAKLTNVKHT-----SKDGNSFHGIKELLIKGNSIKYFRLNPDAEKKA---------------Q A0A1G4IFJ9/1-85 M---NTEGLPLKVLSDAVGTTVSLELKNGELYTGTLSEVV-DNMGVLLTSARKT-----TMAGRE-VDMPKVLVCGTNIVFFQL-PDALRCCPPL------------M A4HBA7/3-83 ------ESIPMKVLFDALHLKVSIEVATGEVYHGIVEELQ-NNMNVLLKNATKT-----TRGGKE-TKMDSVFVRGSNIVFFQL-PDALQTSPAL------------- C9ZLT9/1-85 M---NTEGLPLKVLSDAVGTTVSLELKNGELYTGTLSEVV-DNMGVLLTSARKT-----TMAGRE-VDMPKVLVCGTNIVFFQL-PDALRCCPPL------------M A0A3L6LAZ7/1-85 M---NTEGLPLKVLSDAVGTTVSLELKNGELYTGTLSEVV-DNMGVLLTSARKT-----TMAGRE-VDMPKVLVCGTNIVFFQL-PDALRCCPPL------------M E9BRG5/3-83 ------ESIPIKVLFDALHLKVSIEVATGEVYHGTVEELQ-NNMNVLLKDATKT-----ARGGKE-TKMDSVFVRGSNIVFFQL-PDALQTSPAL------------- A0A088RPU2/3-83 ------ESIPIKVLFDALHLKVSIEVATGEVYHGIVEELQ-NNMNVLLKNATKT-----TRGGKE-TKMDSVFVRGSNIVFFQL-PDALQTSPAL------------- A4IAF5/3-83 ------ESIPIKVLFDALHLKVSIEVATGEVYHGTVEELQ-NNMNVLLKDATKT-----ARGGKE-TKMDSVFVRGSNIVFFQL-PDALQTSPAL------------- A0A1E1IV01/3-83 ------ESIPIKVLFDALHLKVSIEVATGEVYHGIVEELQ-NNMNVLLKNATKT-----TRGGKE-TKMDSVFVRGSNIVFFQL-PDALQTSPAL------------- E1F928/1-84 ----MTITAPIQLLFEAIDMRVSVETRAGTIYEGKLVSVE-PTLSVTISNCTIT-----HPTGQR-EIAQTVMLRGSEVRFVSV-PSALVDSPVL------------K V6TEB2/1-84 ----MTITAPIQLLFEAIDMYVSVETRTGSIYEGKLVSVE-PTLSVTISNCTIT-----HPTGQK-ETAQTVMLRGSEVRFVSV-PNALVDSPVL------------K A0A3S7X8L1/3-83 ------ESIPIKVLFDALHLKVSIEVATGEVYHGTVEELQ-NNMNVLLKDATKT-----ARGGKE-TKMDSVFVRGSNIVFFQL-PDALQTSPAL------------- A0A3P3Z586/3-83 ------ESIPMKVLFDALHLKVSIEVATGEVYHGIVEELQ-NNMNVLLKNATKT-----TRGGKE-TKMDSVFVRGSNIVFFQL-PDALQTSPAL------------- A0CSI7/2-83 -----INIFPLSLLLTAKGSDVVIEVKAGDTYDGKLELLD-KFMNVKLTNVKHT-----SKDGNSFHGIKELLIKGNSIKYFRLNPDAEKKA---------------Q #=GC scorecons 000012334854664463333855844585574947345404455647454436000004347440334337354744636536064553244340000000000001 #=GC scorecons_70 _________*__**__*____*__*___*__*_*_*_________*_*_____*________*________*___*__*______*______________________ #=GC scorecons_80 _________*___________*__*___*__*_*_____________*______________*________*___*________________________________ #=GC scorecons_90 _________*___________*__*___*____*__________________________________________________________________________ //