# STOCKHOLM 1.0
#=GF ID 2.30.140.40/FF/000001
#=GF DE Genome polyprotein
#=GF AC 2.30.140.40/FF/000001
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 58.912
#=GS 4h9kA02/86-142      AC Q68871
#=GS 4h9kA02/86-142      OS Classical swine fever virus - Alfort/187
#=GS 4h9kA02/86-142      DE Genome polyprotein
#=GS 4h9kA02/86-142      DR CATH; 4h9k; A:100-156; 
#=GS 4h9kA02/86-142      DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus C; 
#=GS 4h9kA02/86-142      DR GO; GO:0005515; 
#=GS P19711/100-156      AC P19711
#=GS P19711/100-156      OS Bovine viral diarrhea virus 1-NADL
#=GS P19711/100-156      DE Genome polyprotein
#=GS P19711/100-156      DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus A; 
#=GS P19711/100-156      DR GO; GO:0003677; GO:0003723; GO:0005515; GO:0032993; GO:0033592; GO:0043489; GO:0044161; GO:1990814; GO:1990904; 
#=GS P19711/100-156      DR EC; 2.7.7.48; 3.4.21.113; 3.6.1.15; 3.6.4.13; 
#=GS A0N0F0/100-156      AC A0N0F0
#=GS A0N0F0/100-156      OS Bovine viral diarrhea virus 1
#=GS A0N0F0/100-156      DE N-terminal autoprotease
#=GS A0N0F0/100-156      DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus A; 
#=GS A0N0F0/100-156      DR GO; GO:0043066; 
#=GS 4h9jA02/86-142      AC Q68871
#=GS 4h9jA02/86-142      OS Classical swine fever virus - Alfort/187
#=GS 4h9jA02/86-142      DE Genome polyprotein
#=GS 4h9jA02/86-142      DR CATH; 4h9j; A:100-156; 
#=GS 4h9jA02/86-142      DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus C; 
#=GS 4h9jA02/86-142      DR GO; GO:0005515; 
#=GS P19712/100-156      AC P19712
#=GS P19712/100-156      OS Hog cholera virus (strain Alfort)
#=GS P19712/100-156      DE Genome polyprotein
#=GS P19712/100-156      DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus C; 
#=GS P19712/100-156      DR GO; GO:0005515; 
#=GS P19712/100-156      DR EC; 2.7.7.48; 3.4.21.113; 3.6.1.15; 3.6.4.13; 
#=GS P21530/100-156      AC P21530
#=GS P21530/100-156      OS Classical swine fever virus - Brescia
#=GS P21530/100-156      DE Genome polyprotein
#=GS P21530/100-156      DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus C; 
#=GS P21530/100-156      DR EC; 2.7.7.48; 3.4.21.113; 3.6.1.15; 3.6.4.13; 
#=GS Q01499/100-156      AC Q01499
#=GS Q01499/100-156      OS Bovine viral diarrhea virus 1-SD1
#=GS Q01499/100-156      DE Genome polyprotein
#=GS Q01499/100-156      DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus A; 
#=GS Q01499/100-156      DR EC; 2.7.7.48; 3.4.21.113; 3.6.1.15; 3.6.4.13; 
#=GS F2X8A1/100-156      AC F2X8A1
#=GS F2X8A1/100-156      OS Classical swine fever virus
#=GS F2X8A1/100-156      DE Genome polyprotein
#=GS F2X8A1/100-156      DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus C; 
#=GS F2X8A1/100-156      DR GO; GO:0005515; 
#=GS Q5U8X5/100-156      AC Q5U8X5
#=GS Q5U8X5/100-156      OS Classical swine fever virus
#=GS Q5U8X5/100-156      DE Genome polyprotein
#=GS Q5U8X5/100-156      DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus C; 
#=GS Q5U8X5/100-156      DR GO; GO:0005515; 
#=GS B1PVV8/100-156      AC B1PVV8
#=GS B1PVV8/100-156      OS Classical swine fever virus
#=GS B1PVV8/100-156      DE Genome polyprotein
#=GS B1PVV8/100-156      DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus C; 
#=GS B1PVV8/100-156      DR GO; GO:0005515; 
#=GS Q68871/100-156      AC Q68871
#=GS Q68871/100-156      OS Classical swine fever virus - Alfort/187
#=GS Q68871/100-156      DE Genome polyprotein
#=GS Q68871/100-156      DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus C; 
#=GS Q68871/100-156      DR GO; GO:0005515; 
#=GS Q9YS30/100-156      AC Q9YS30
#=GS Q9YS30/100-156      OS Classical swine fever virus
#=GS Q9YS30/100-156      DE Genome polyprotein
#=GS Q9YS30/100-156      DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus C; 
#=GS Q9YS30/100-156      DR GO; GO:0005515; 
#=GS A0A0E3M1I6/100-156  AC A0A0E3M1I6
#=GS A0A0E3M1I6/100-156  OS Classical swine fever virus
#=GS A0A0E3M1I6/100-156  DE Polyprotein
#=GS A0A0E3M1I6/100-156  DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus C; 
#=GS Q9QJU8/100-156      AC Q9QJU8
#=GS Q9QJU8/100-156      OS Classical swine fever virus isolate Schweinfurt
#=GS Q9QJU8/100-156      DE Nonstructural protein Npro
#=GS Q9QJU8/100-156      DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus C; 
#=GS Q99BK1/100-156      AC Q99BK1
#=GS Q99BK1/100-156      OS Classical swine fever virus strain Eystrup
#=GS Q99BK1/100-156      DE Genome polyprotein
#=GS Q99BK1/100-156      DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus C; 
#=GS Q06526/100-156      AC Q06526
#=GS Q06526/100-156      OS Classical swine fever virus
#=GS Q06526/100-156      DE Hog cholera virus structural protein mRNAbn
#=GS Q06526/100-156      DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus C; 
#=GS O10479/100-156      AC O10479
#=GS O10479/100-156      OS Classical swine fever virus
#=GS O10479/100-156      DE Polyprotein
#=GS O10479/100-156      DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus C; 
#=GS W0FB01/77-133       AC W0FB01
#=GS W0FB01/77-133       OS Classical swine fever virus
#=GS W0FB01/77-133       DE Polyprotein
#=GS W0FB01/77-133       DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus C; 
#=GS A0A0H4ACD2/100-156  AC A0A0H4ACD2
#=GS A0A0H4ACD2/100-156  OS Classical swine fever virus
#=GS A0A0H4ACD2/100-156  DE Polyprotein
#=GS A0A0H4ACD2/100-156  DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus C; 
#=GS A9ZQ31/100-156      AC A9ZQ31
#=GS A9ZQ31/100-156      OS Bovine viral diarrhea virus 1
#=GS A9ZQ31/100-156      DE Polyprotein
#=GS A9ZQ31/100-156      DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus A; 
#=GS Q5UBZ6/97-153       AC Q5UBZ6
#=GS Q5UBZ6/97-153       OS Bovine viral diarrhea virus 1
#=GS Q5UBZ6/97-153       DE N-terminal protease
#=GS Q5UBZ6/97-153       DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus A; 
#=GS Q9QJV1/100-156      AC Q9QJV1
#=GS Q9QJV1/100-156      OS Bovine viral diarrhea virus-1 isolate 519
#=GS Q9QJV1/100-156      DE Nonstructural protein Npro
#=GS Q9QJV1/100-156      DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus A; 
#=GS O10637/100-156      AC O10637
#=GS O10637/100-156      OS Bovine viral diarrhea virus 1
#=GS O10637/100-156      DE Npro
#=GS O10637/100-156      DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus A; 
#=GS M4WE18/100-156      AC M4WE18
#=GS M4WE18/100-156      OS Bovine viral diarrhea virus 1
#=GS M4WE18/100-156      DE N-terminal autoprotease
#=GS M4WE18/100-156      DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus A; 
#=GS Q7T9M4/100-156      AC Q7T9M4
#=GS Q7T9M4/100-156      OS Bovine viral diarrhea virus 1
#=GS Q7T9M4/100-156      DE Polyprotein
#=GS Q7T9M4/100-156      DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus A; 
#=GS I3Y165/100-156      AC I3Y165
#=GS I3Y165/100-156      OS Bovine viral diarrhea virus 1
#=GS I3Y165/100-156      DE Npro
#=GS I3Y165/100-156      DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus A; 
#=GS Q02633/86-142       AC Q02633
#=GS Q02633/86-142       OS Bovine viral diarrhea virus 1
#=GS Q02633/86-142       DE p20 protein
#=GS Q02633/86-142       DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus A; 
#=GS A0A291HHB7/100-156  AC A0A291HHB7
#=GS A0A291HHB7/100-156  OS Bovine viral diarrhea virus 1
#=GS A0A291HHB7/100-156  DE Polyprotein
#=GS A0A291HHB7/100-156  DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus A; 
#=GS W8EAE0/100-156      AC W8EAE0
#=GS W8EAE0/100-156      OS Bovine viral diarrhea virus 1
#=GS W8EAE0/100-156      DE Genome polyprotein
#=GS W8EAE0/100-156      DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus A; 
#=GS A0A0H4LW58/100-156  AC A0A0H4LW58
#=GS A0A0H4LW58/100-156  OS Bovine viral diarrhea virus 1
#=GS A0A0H4LW58/100-156  DE Polyprotein
#=GS A0A0H4LW58/100-156  DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus A; 
#=GS O71954/100-156      AC O71954
#=GS O71954/100-156      OS Bovine viral diarrhea virus strain Bega
#=GS O71954/100-156      DE Polyprotein
#=GS O71954/100-156      DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus A; 
#=GS C0A1D2/100-156      AC C0A1D2
#=GS C0A1D2/100-156      OS Bovine viral diarrhea virus 1
#=GS C0A1D2/100-156      DE Poryprotein
#=GS C0A1D2/100-156      DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus A; 
#=GS A9ZQ29/100-156      AC A9ZQ29
#=GS A9ZQ29/100-156      OS Bovine viral diarrhea virus 1
#=GS A9ZQ29/100-156      DE Polyprotein
#=GS A9ZQ29/100-156      DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus A; 
#=GS A0A2C9C261/100-156  AC A0A2C9C261
#=GS A0A2C9C261/100-156  OS Bovine viral diarrhea virus 1
#=GS A0A2C9C261/100-156  DE Genome polyprotein
#=GS A0A2C9C261/100-156  DR ORG; Viruses; Flaviviridae; Pestivirus; Pestivirus A; 
#=GF SQ 34
4h9kA02/86-142              RAPLEFFSEAQFCEVTKRIGRVTGSDGRLYHIYVCIDGCILLKLAKRGEPRTLKWIR
P19711/100-156              RAPLELFEEGSMCETTKRIGRVTGSDGKLYHIYVCIDGCIIIKSATRSYQRVFRWVH
A0N0F0/100-156              RAPLEFFEEGSMCVTTKRIGRTTGSDGKLYHIYVCIDGCILVKSATRCHQKVLRWVH
4h9jA02/86-142              RAPLEFFSEAQFCEVTKRIGRVTGSDGRLYHIYVCIDGCILLKLAKRGEPRTLKWIR
P19712/100-156              RAPLEFFDEAQFCEVTKRIGRVTGSDGKLYHIYVCVDGCILLKLAKRGTPRTLKWIR
P21530/100-156              RAPLEFFDEAQFCEVTKRIGRVTGSDGKLYHIYVCIDGCILLKLAKRGEPRTLKWIR
Q01499/100-156              RAPLELFEEGSMCETTKRIGRVTGSDGKLYHIYICIDGCITVKSATRSHQRVLRWVH
F2X8A1/100-156              RAPLEFFNETQFCEVTKRIGRVTGSDGKLYHIYVCIDGCILLKLAKRGEPRTLKWIR
Q5U8X5/100-156              RAPLEFFNEAQFCEVTKRIGRVTGSDGKLYHIYVCIDGCILLKLAKRGEPRTLKWIR
B1PVV8/100-156              RAPLEFFNETQFCEVTKRIGRVTGSDGKLYHMYVCIDGCILLKLAKRGEPRTLKWIR
Q68871/100-156              RAPLEFFSEAQFCEVTKRIGRVTGSDGRLYHIYVCIDGCILLKLAKRGEPRTLKWIR
Q9YS30/100-156              RAPLEFFNETQFCEVTKRIGRVTGSDGKLYHIYVCIDGCILLKLAKRGEPRTLKWIR
A0A0E3M1I6/100-156          RAPLEFFNEAQFCEVTKRIGRVTGSDGKLYHIYVCIDGCILLKLAKRGEPRILKWIR
Q9QJU8/100-156              RAPLEFFDEAQFCEVTKRIGRVTGSDGKLYHIYVCVDGCILLKLAKRGTPRTLKWVR
Q99BK1/100-156              RAPLEFFNEAQFCEVTKRIGRVTGSDGKLYHIYVCIDGCILLKLAKRDEPRTLKWIR
Q06526/100-156              RAPLEFFSEAQFCEVTKRIGRVTGSDGRLYHIYVCIDGCILLKLAKRGEPRTLKWIR
O10479/100-156              RAPLEFFDEVQFCEVTKRIGRVTGSDGKLYHTYVCIGGCILLKLAKRGEPRTLKWIR
W0FB01/77-133               RAPLEFFGEAQFCEVTKRIGRVTGSDGKLYHLYVCIDGCVLLKLAKRDEPRTLKWIR
A0A0H4ACD2/100-156          RAPLEFFDEAQFCEVTKRIGRVTGSDGKLYHMYVCADGCILLKLAKRGTPRTLKWIR
A9ZQ31/100-156              RAPLEFFEEGSMCETTKRIGRTTGSDGKLYHIYVCIDGCILVKSATRYHQKILRWVH
Q5UBZ6/97-153               RAPLELFEEGSMCETTKRIGRVTGSDSKLYHIYVCIDGCIIVKSATRSHQKVLRWVH
Q9QJV1/100-156              RAPLELFEEGSMCETTKRIGRVTGSDSKLYHIYVCIDGCIIVKSATRSHQRVLRWVY
O10637/100-156              RAPLEIFEEGSMCEATKRIGRVTGSDGRLYHIYVCIDGCIIVKSAARSHQKVLRWVH
M4WE18/100-156              RAPLELFEEGLMCETTKRIGRVTGSDGKLYHIYVCIDGCIIVKSATRGHQRVLKWVH
Q7T9M4/100-156              RAPLELFEEGSMCETTKRIGRTTGSDGKLYHIYVCIDGCILVKSATRNHQKILRWVH
I3Y165/100-156              RAPLELFEEELMCETTKRIGRVTGSDGKLYHIYVCIDGCIIVKSATRSHQRVLRWVH
Q02633/86-142               RAPLELFEEGSMCDTTKWIGRVTGSDGKLYHIYVCIDGCITVKSATRSHQRVLRWVH
A0A291HHB7/100-156          RAPLELFEESFMCETTKRIGRVTGSDGKLYHIYVCIDGCIIIKSATRSHQRVLRWVH
W8EAE0/100-156              RAPLELFEEGSMCETTKRIGRVTGSDSKLYHIYVCIDGCIIVKSATRSHQKVLRWVH
A0A0H4LW58/100-156          RAPLELFEEGFMCETTKRIGRVTGSDGKLYHIYVCIDGCITVKSATRSHQRVLRWVH
O71954/100-156              RAPLELFEEGSMCETTKRIGRVTGSDGKLYHIYVCIDGCIIVKSATRSHQKVLRWVH
C0A1D2/100-156              RAPLELFEEGSMCETTKRIGRVTGSDSKLYHIYVCIDGCIIVKSATRSHQKVLRWVH
A9ZQ29/100-156              RAPLELFEEGSMCETTKRIGRVTGSDSKLYHIYVCIDGCIIVKSATRSHQKVLRWVH
A0A2C9C261/100-156          RAPLELFEEGFMCETTKRIGRVTGSDGKLYHIYVCIDGCITVKSATRNHQRVLRWVH
#=GC scorecons              999996959545985998999799997899979898899856959595557587976
#=GC scorecons_70           *******_*___**_*************************_**_*_*___*_*****
#=GC scorecons_80           *****_*_*___**_*************************__*_*_*___*_*_*__
#=GC scorecons_90           *****_*_*___**_******_****__***_********__*_*_*_____*_*__
//