# STOCKHOLM 1.0
#=GF ID 2.20.70.10/FF/000095
#=GF DE Pre-mRNA-processing factor 40
#=GF AC 2.20.70.10/FF/000095
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 77.077
#=GS Q9VQK5/49-89      AC Q9VQK5
#=GS Q9VQK5/49-89      OS Drosophila melanogaster
#=GS Q9VQK5/49-89      DE LD24714p
#=GS Q9VQK5/49-89      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila melanogaster; 
#=GS Q9VQK5/49-89      DR GO; GO:0000398; GO:0005685; GO:0071011; 
#=GS A9SPD0/356-407    AC A9SPD0
#=GS A9SPD0/356-407    OS Physcomitrella patens
#=GS A9SPD0/356-407    DE Predicted protein
#=GS A9SPD0/356-407    DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella; Physcomitrella patens; 
#=GS A8IU79/236-279    AC A8IU79
#=GS A8IU79/236-279    OS Chlamydomonas reinhardtii
#=GS A8IU79/236-279    DE WW domain protein
#=GS A8IU79/236-279    DR ORG; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas; Chlamydomonas reinhardtii; 
#=GS W4YM54/164-218    AC W4YM54
#=GS W4YM54/164-218    OS Strongylocentrotus purpuratus
#=GS W4YM54/164-218    DE Uncharacterized protein
#=GS W4YM54/164-218    DR ORG; Eukaryota; Metazoa; Echinodermata; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus; Strongylocentrotus purpuratus; 
#=GS A0A0D0URN2/2-44   AC A0A0D0URN2
#=GS A0A0D0URN2/2-44   OS Cryptococcus gattii VGII Ram5
#=GS A0A0D0URN2/2-44   DE Unplaced genomic scaffold supercont1.18, whole genome shotgun sequence
#=GS A0A0D0URN2/2-44   DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus gattii species complex; Cryptococcus gattii VGII; 
#=GS B7PD86/1-39       AC B7PD86
#=GS B7PD86/1-39       OS Ixodes scapularis
#=GS B7PD86/1-39       DE Spliceosomal protein FBP11/splicing factor PRP40, putative
#=GS B7PD86/1-39       DR ORG; Eukaryota; Metazoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Ixodinae; Ixodes; Ixodes scapularis; 
#=GS F5H952/2-45       AC F5H952
#=GS F5H952/2-45       OS Cryptococcus neoformans var. neoformans B-3501A
#=GS F5H952/2-45       DE Uncharacterized protein
#=GS F5H952/2-45       DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex; Cryptococcus neoformans; Cryptococcus neoformans var. neoformans; 
#=GS E6R7S2/2-44       AC E6R7S2
#=GS E6R7S2/2-44       OS Cryptococcus gattii WM276
#=GS E6R7S2/2-44       DE Formin binding protein 3, putative
#=GS E6R7S2/2-44       DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus gattii species complex; Cryptococcus gattii VGI; 
#=GS A0A0D0VDW0/2-44   AC A0A0D0VDW0
#=GS A0A0D0VDW0/2-44   OS Cryptococcus gattii CA1280
#=GS A0A0D0VDW0/2-44   DE Unplaced genomic scaffold supercont1.15, whole genome shotgun sequence
#=GS A0A0D0VDW0/2-44   DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus gattii species complex; Cryptococcus gattii VGIII; 
#=GS A0A0D0WLX3/2-45   AC A0A0D0WLX3
#=GS A0A0D0WLX3/2-45   OS Cryptococcus gattii VGIV IND107
#=GS A0A0D0WLX3/2-45   DE Unplaced genomic scaffold supercont2.17, whole genome shotgun sequence
#=GS A0A0D0WLX3/2-45   DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus gattii species complex; Cryptococcus gattii VGIV; 
#=GS J9VN88/2-44       AC J9VN88
#=GS J9VN88/2-44       OS Cryptococcus neoformans var. grubii H99
#=GS J9VN88/2-44       DE Pre-mRNA-processing factor 40
#=GS J9VN88/2-44       DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex; Cryptococcus neoformans; Cryptococcus neoformans var. grubii; 
#=GS B4NRU4/49-90      AC B4NRU4
#=GS B4NRU4/49-90      OS Drosophila simulans
#=GS B4NRU4/49-90      DE GD12005
#=GS B4NRU4/49-90      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila simulans; 
#=GS B4I2U4/49-89      AC B4I2U4
#=GS B4I2U4/49-89      OS Drosophila sechellia
#=GS B4I2U4/49-89      DE GM18387
#=GS B4I2U4/49-89      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila sechellia; 
#=GS A0A1W4UTB1/47-88  AC A0A1W4UTB1
#=GS A0A1W4UTB1/47-88  OS Drosophila ficusphila
#=GS A0A1W4UTB1/47-88  DE LOW QUALITY PROTEIN: pre-mRNA-processing factor 40 homolog A
#=GS A0A1W4UTB1/47-88  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; ficusphila subgroup; Drosophila ficusphila; 
#=GS A0A0J9QVI7/49-89  AC A0A0J9QVI7
#=GS A0A0J9QVI7/49-89  OS Drosophila simulans
#=GS A0A0J9QVI7/49-89  DE Uncharacterized protein
#=GS A0A0J9QVI7/49-89  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila simulans; 
#=GS A0A095C5T8/2-44   AC A0A095C5T8
#=GS A0A095C5T8/2-44   OS Cryptococcus gattii VGII R265
#=GS A0A095C5T8/2-44   DE Pre-mRNA-processing factor 40
#=GS A0A095C5T8/2-44   DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus gattii species complex; Cryptococcus gattii VGII; 
#=GS Q5KEX2/2-45       AC Q5KEX2
#=GS Q5KEX2/2-45       OS Cryptococcus neoformans var. neoformans JEC21
#=GS Q5KEX2/2-45       DE Formin binding protein 3, putative
#=GS Q5KEX2/2-45       DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex; Cryptococcus neoformans; Cryptococcus neoformans var. neoformans; 
#=GS A0A0D0YJ70/2-44   AC A0A0D0YJ70
#=GS A0A0D0YJ70/2-44   OS Cryptococcus gattii EJB2
#=GS A0A0D0YJ70/2-44   DE Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence
#=GS A0A0D0YJ70/2-44   DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus gattii species complex; Cryptococcus gattii VGI; 
#=GS A0A225YHR1/3-44   AC A0A225YHR1
#=GS A0A225YHR1/3-44   OS Cryptococcus neoformans var. grubii c45
#=GS A0A225YHR1/3-44   DE Pre-mRNA-processing factor 40
#=GS A0A225YHR1/3-44   DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex; Cryptococcus neoformans; Cryptococcus neoformans var. grubii; 
#=GS A0A226BGH3/2-44   AC A0A226BGH3
#=GS A0A226BGH3/2-44   OS Cryptococcus neoformans var. grubii Bt85
#=GS A0A226BGH3/2-44   DE Pre-mRNA-processing factor 40
#=GS A0A226BGH3/2-44   DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex; Cryptococcus neoformans; Cryptococcus neoformans var. grubii; 
#=GF SQ 20
Q9VQK5/49-89              -----------VMATSTEWTEHKAPDGRPYYYNQNTKQSSWEKPEALMTPAE-----
A9SPD0/356-407            HKGISI---AAASSGAADWQEHVAPDGRRYYYNRRTKQSSWEKPTELMTPTERAD--
A8IU79/236-279            -------------GPAKEWTEHTAPDGRKYYYNAKTKQSSWEKPDELLSGAEKTDAP
W4YM54/164-218            AQKETVQGSGDEKKKKTQWTEHKAPDGRTYFYNNLTKQSKWEKPDDLKTKAEILL--
A0A0D0URN2/2-44           -----------SGEEKSLWSEYKNAQGRVYWSHAVTKQSVWEKPDELKTPFEKA---
B7PD86/1-39               ---------------KSNWTEHKAPDGRVYFYNHVTKQSSWEKPDELKTHTELL---
F5H952/2-45               -----------SGEEKSLWSEYKNAQGRVYWSHAVTKQSVWEKPDELKTPFEKAL--
E6R7S2/2-44               -----------SGEEKSLWSEYKNAQGRVYWSHAVTKQSVWEKPDELKTPFEKA---
A0A0D0VDW0/2-44           -----------SGEEKSLWSEYKNAQGRVYWSHAVTKQSVWEKPDELKTPFEKA---
A0A0D0WLX3/2-45           -----------SGEEKSLWSEYKNAQGRVYWSHAVTKQSVWEKPDELKTPFEKAL--
J9VN88/2-44               -----------SGEEKSLWSEYKNAQGRVYWSHAVTKQSVWEKPDELKTPFEKA---
B4NRU4/49-90              -----------VMATSTEWTEHKAPDGRPYYYNQNTKQSSWEKPEALMTPAEL----
B4I2U4/49-89              -----------VMATSTEWTEHKAPDGRPYYYNQNTKQSSWEKPEALMTPAE-----
A0A1W4UTB1/47-88          ----------GVMASSTEWTEHKAPDGRPYYYNQNTKQSSWEKPEALMTPAE-----
A0A0J9QVI7/49-89          -----------VMATSTEWTEHKAPDGRPYYYNQNTKQSSWEKPEALMTPAE-----
A0A095C5T8/2-44           -----------SGEEKSLWSEYKNAQGRVYWSHAVTKQSVWEKPDELKTPFEKA---
Q5KEX2/2-45               -----------SGEEKSLWSEYKNAQGRVYWSHAVTKQSVWEKPDELKTPFEKAL--
A0A0D0YJ70/2-44           -----------SGEEKSLWSEYKNAQGRVYWSHAVTKQSVWEKPDELKTPFEKA---
A0A225YHR1/3-44           ------------GEGKSLWSEYKNAQGRVYWSHAVTKQSVWEKPDELKTPFEKA---
A0A226BGH3/2-44           -----------SGEEKSLWSEYKNAQGRVYWSHAVTKQSVWEKPDELKTPFEKA---
#=GC scorecons            000000000003333553959765659949556449999499996594864922000
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