# STOCKHOLM 1.0 #=GF ID 2.20.70.10/FF/000083 #=GF DE pre-mRNA-processing factor 40 homolog A isoform X3 #=GF AC 2.20.70.10/FF/000083 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 62.521 #=GS F6R4T5/81-130 AC F6R4T5 #=GS F6R4T5/81-130 OS Ciona intestinalis #=GS F6R4T5/81-130 DE Uncharacterized protein #=GS F6R4T5/81-130 DR ORG; Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona; Ciona intestinalis; #=GS F6R9S2/86-124 AC F6R9S2 #=GS F6R9S2/86-124 OS Xenopus tropicalis #=GS F6R9S2/86-124 DE Pre-mRNA-processing factor 40 homolog A #=GS F6R9S2/86-124 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana; Xenopus tropicalis; #=GS C3YZT8/26-78 AC C3YZT8 #=GS C3YZT8/26-78 OS Branchiostoma floridae #=GS C3YZT8/26-78 DE Uncharacterized protein #=GS C3YZT8/26-78 DR ORG; Eukaryota; Metazoa; Chordata; Cephalochordata; Branchiostomidae; Branchiostoma; Branchiostoma floridae; #=GS A0A218UJN2/139-179 AC A0A218UJN2 #=GS A0A218UJN2/139-179 OS Lonchura striata domestica #=GS A0A218UJN2/139-179 DE Pre-mRNA-processing factor 40 A #=GS A0A218UJN2/139-179 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Lonchura; Lonchura striata; Lonchura striata domestica; #=GS A0A1U7S2T3/145-185 AC A0A1U7S2T3 #=GS A0A1U7S2T3/145-185 OS Alligator sinensis #=GS A0A1U7S2T3/145-185 DE pre-mRNA-processing factor 40 homolog A isoform X3 #=GS A0A1U7S2T3/145-185 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Crocodylia; Alligatoridae; Alligatorinae; Alligator; Alligator sinensis; #=GS K7FJ20/286-326 AC K7FJ20 #=GS K7FJ20/286-326 OS Pelodiscus sinensis #=GS K7FJ20/286-326 DE Pre-mRNA processing factor 40 homolog A #=GS K7FJ20/286-326 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus; Pelodiscus sinensis; #=GS H9GJG6/229-270 AC H9GJG6 #=GS H9GJG6/229-270 OS Anolis carolinensis #=GS H9GJG6/229-270 DE Uncharacterized protein #=GS H9GJG6/229-270 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Lepidosauria; Squamata; Iguania; Dactyloidae; Anolis; Anolis carolinensis; #=GS G1NJM0/136-176 AC G1NJM0 #=GS G1NJM0/136-176 OS Meleagris gallopavo #=GS G1NJM0/136-176 DE Pre-mRNA processing factor 40 homolog A #=GS G1NJM0/136-176 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Meleagridinae; Meleagris; Meleagris gallopavo; #=GS A0A2I0MG54/122-162 AC A0A2I0MG54 #=GS A0A2I0MG54/122-162 OS Columba livia #=GS A0A2I0MG54/122-162 DE PRP40 pre-mRNA processing factor 40 homolog A, transcript variant X2 #=GS A0A2I0MG54/122-162 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Aves; Neognathae; Columbiformes; Columbidae; Columba; Columba livia; #=GS U3FBR0/136-176 AC U3FBR0 #=GS U3FBR0/136-176 OS Micrurus fulvius #=GS U3FBR0/136-176 DE Pre-mRNA-processing factor 40 A-like protein #=GS U3FBR0/136-176 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Lepidosauria; Squamata; Serpentes; Colubroidea; Elapidae; Elapinae; Micrurus; Micrurus fulvius; #=GS A0A493SVI9/97-137 AC A0A493SVI9 #=GS A0A493SVI9/97-137 OS Anas platyrhynchos platyrhynchos #=GS A0A493SVI9/97-137 DE Pre-mRNA processing factor 40 homolog A #=GS A0A493SVI9/97-137 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Anas; Anas platyrhynchos; Anas platyrhynchos platyrhynchos; #=GS A0A3M0LIJ8/208-248 AC A0A3M0LIJ8 #=GS A0A3M0LIJ8/208-248 OS Hirundo rustica rustica #=GS A0A3M0LIJ8/208-248 DE Uncharacterized protein #=GS A0A3M0LIJ8/208-248 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Aves; Neognathae; Passeriformes; Sylvioidea; Hirundinidae; Hirundo; Hirundo rustica; Hirundo rustica rustica; #=GS A0A151M0G2/173-212 AC A0A151M0G2 #=GS A0A151M0G2/173-212 OS Alligator mississippiensis #=GS A0A151M0G2/173-212 DE Pre-mRNA-processing factor 40-like protein A #=GS A0A151M0G2/173-212 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Crocodylia; Alligatoridae; Alligatorinae; Alligator; Alligator mississippiensis; #=GS A0A1V4K5N1/154-194 AC A0A1V4K5N1 #=GS A0A1V4K5N1/154-194 OS Patagioenas fasciata monilis #=GS A0A1V4K5N1/154-194 DE Pre-mRNA-processing factor 40-like protein A isoform A #=GS A0A1V4K5N1/154-194 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Aves; Neognathae; Columbiformes; Columbidae; Patagioenas; Patagioenas fasciata; Patagioenas fasciata monilis; #=GS A0A226NMC4/162-202 AC A0A226NMC4 #=GS A0A226NMC4/162-202 OS Callipepla squamata #=GS A0A226NMC4/162-202 DE Uncharacterized protein #=GS A0A226NMC4/162-202 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Aves; Neognathae; Galloanserae; Galliformes; Odontophoridae; Callipepla; Callipepla squamata; #=GS F1NCE3/126-166 AC F1NCE3 #=GS F1NCE3/126-166 OS Gallus gallus #=GS F1NCE3/126-166 DE Uncharacterized protein #=GS F1NCE3/126-166 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus; Gallus gallus; #=GS A0A226PQF5/162-202 AC A0A226PQF5 #=GS A0A226PQF5/162-202 OS Colinus virginianus #=GS A0A226PQF5/162-202 DE Uncharacterized protein #=GS A0A226PQF5/162-202 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Aves; Neognathae; Galloanserae; Galliformes; Odontophoridae; Colinus; Colinus virginianus; #=GS A0A3Q0GMK0/145-185 AC A0A3Q0GMK0 #=GS A0A3Q0GMK0/145-185 OS Alligator sinensis #=GS A0A3Q0GMK0/145-185 DE pre-mRNA-processing factor 40 homolog A isoform X1 #=GS A0A3Q0GMK0/145-185 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Crocodylia; Alligatoridae; Alligatorinae; Alligator; Alligator sinensis; #=GS A0A2I0MG76/114-154 AC A0A2I0MG76 #=GS A0A2I0MG76/114-154 OS Columba livia #=GS A0A2I0MG76/114-154 DE PRP40 pre-mRNA processing factor 40 homolog A, transcript variant X3 #=GS A0A2I0MG76/114-154 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Aves; Neognathae; Columbiformes; Columbidae; Columba; Columba livia; #=GS A0A1V4K5E0/154-194 AC A0A1V4K5E0 #=GS A0A1V4K5E0/154-194 OS Patagioenas fasciata monilis #=GS A0A1V4K5E0/154-194 DE Pre-mRNA-processing factor 40-like protein A isoform B #=GS A0A1V4K5E0/154-194 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Aves; Neognathae; Columbiformes; Columbidae; Patagioenas; Patagioenas fasciata; Patagioenas fasciata monilis; #=GS A0A3Q0GS26/124-164 AC A0A3Q0GS26 #=GS A0A3Q0GS26/124-164 OS Alligator sinensis #=GS A0A3Q0GS26/124-164 DE pre-mRNA-processing factor 40 homolog A isoform X2 #=GS A0A3Q0GS26/124-164 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Crocodylia; Alligatoridae; Alligatorinae; Alligator; Alligator sinensis; #=GS A0A2I0MG68/122-162 AC A0A2I0MG68 #=GS A0A2I0MG68/122-162 OS Columba livia #=GS A0A2I0MG68/122-162 DE PRP40 pre-mRNA processing factor 40 homolog A, transcript variant X1 #=GS A0A2I0MG68/122-162 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Aves; Neognathae; Columbiformes; Columbidae; Columba; Columba livia; #=GS U3IT46/236-276 AC U3IT46 #=GS U3IT46/236-276 OS Anas platyrhynchos platyrhynchos #=GS U3IT46/236-276 DE Pre-mRNA processing factor 40 homolog A #=GS U3IT46/236-276 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Anas; Anas platyrhynchos; Anas platyrhynchos platyrhynchos; #=GS A0A1U8DDN9/124-164 AC A0A1U8DDN9 #=GS A0A1U8DDN9/124-164 OS Alligator sinensis #=GS A0A1U8DDN9/124-164 DE pre-mRNA-processing factor 40 homolog A isoform X4 #=GS A0A1U8DDN9/124-164 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Crocodylia; Alligatoridae; Alligatorinae; Alligator; Alligator sinensis; #=GS A0A2I0MG49/114-154 AC A0A2I0MG49 #=GS A0A2I0MG49/114-154 OS Columba livia #=GS A0A2I0MG49/114-154 DE PRP40 pre-mRNA processing factor 40 homolog A, transcript variant X4 #=GS A0A2I0MG49/114-154 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Aves; Neognathae; Columbiformes; Columbidae; Columba; Columba livia; #=GS A0A493SW67/236-276 AC A0A493SW67 #=GS A0A493SW67/236-276 OS Anas platyrhynchos platyrhynchos #=GS A0A493SW67/236-276 DE Pre-mRNA processing factor 40 homolog A #=GS A0A493SW67/236-276 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Anas; Anas platyrhynchos; Anas platyrhynchos platyrhynchos; #=GS Q90WG3/126-166 AC Q90WG3 #=GS Q90WG3/126-166 OS Gallus gallus #=GS Q90WG3/126-166 DE Formin binding protein 11-related protein #=GS Q90WG3/126-166 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus; Gallus gallus; #=GS F7ESA8/82-120 AC F7ESA8 #=GS F7ESA8/82-120 OS Xenopus tropicalis #=GS F7ESA8/82-120 DE Pre-mRNA-processing factor 40 homolog B #=GS F7ESA8/82-120 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana; Xenopus tropicalis; #=GF SQ 28 F6R4T5/81-130 ----VRNRKQNGFKTDWTEHTAPDGRKYFYNVQTKQSKWEKPEELKTEAEVMLS F6R9S2/86-124 -------------KLQWTEHKSPDGRTYYYNAETKQSTWEKPDDMKTPAEQL-- C3YZT8/26-78 MPPFATSEKPKDEKSPWTEHKAPDGRTYFYNSKTKQSTWEKPAELKSHAELLL- A0A218UJN2/139-179 ---------HSKQKSTWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAE---- A0A1U7S2T3/145-185 ---------QSKQKSVWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAE---- K7FJ20/286-326 ---------PSKQKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAE---- H9GJG6/229-270 --------ESSKQKSMWSEHKSPDGRTYFYNTETKQSTWEKPDDLKTPAE---- G1NJM0/136-176 ---------HSKQKSTWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAE---- A0A2I0MG54/122-162 ---------HSKQKSTWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAE---- U3FBR0/136-176 ---------PSKQKSTWSEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAE---- A0A493SVI9/97-137 ---------HSKQKSTWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAE---- A0A3M0LIJ8/208-248 ---------HSKQKSTWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAE---- A0A151M0G2/173-212 ----------SKQKSVWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAE---- A0A1V4K5N1/154-194 ---------HSKQKSTWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAE---- A0A226NMC4/162-202 ---------HSKQKSTWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAE---- F1NCE3/126-166 ---------HSKQKSTWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAE---- A0A226PQF5/162-202 ---------HSKQKSTWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAE---- A0A3Q0GMK0/145-185 ---------QSKQKSVWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAE---- A0A2I0MG76/114-154 ---------HSKQKSTWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAE---- A0A1V4K5E0/154-194 ---------HSKQKSTWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAE---- A0A3Q0GS26/124-164 ---------QSKQKSVWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAE---- A0A2I0MG68/122-162 ---------HSKQKSTWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAE---- U3IT46/236-276 ---------HSKQKSTWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAE---- A0A1U8DDN9/124-164 ---------QSKQKSVWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAE---- A0A2I0MG49/114-154 ---------HSKQKSTWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAE---- A0A493SW67/236-276 ---------HSKQKSTWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAE---- Q90WG3/126-166 ---------HSKQKSTWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAE---- F7ESA8/82-120 ------------CKSLWTEHKAPDGRTYYYNSETKQSTWEKPDELKSKAEF--- #=GC scorecons 000000000333396398997699997979956999979999678965990000 #=GC scorecons_70 _____________**_***************_***************_**____ #=GC scorecons_80 _____________*__*****_*********__*********_***__**____ #=GC scorecons_90 _____________*__****__****_*_**__****_****__**__**____ //