# STOCKHOLM 1.0
#=GF ID 2.20.70.10/FF/000082
#=GF DE Phosphorylated CTD-interacting factor
#=GF AC 2.20.70.10/FF/000082
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 71.690
#=GS Q9VPB7/132-181      AC Q9VPB7
#=GS Q9VPB7/132-181      OS Drosophila melanogaster
#=GS Q9VPB7/132-181      DE FI17508p1
#=GS Q9VPB7/132-181      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila melanogaster; 
#=GS Q9VPB7/132-181      DR GO; GO:0016422; GO:0048190; 
#=GS Q960B9/132-181      AC Q960B9
#=GS Q960B9/132-181      OS Drosophila melanogaster
#=GS Q960B9/132-181      DE SD08128p
#=GS Q960B9/132-181      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila melanogaster; 
#=GS Q960B9/132-181      DR GO; GO:0048190; 
#=GS Q7PV88/93-146       AC Q7PV88
#=GS Q7PV88/93-146       OS Anopheles gambiae
#=GS Q7PV88/93-146       DE AGAP011933-PA
#=GS Q7PV88/93-146       DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicomorpha; Culicoidea; Culicidae; Anophelinae; Anopheles; Cellia; Anopheles gambiae; 
#=GS A0A1S4H7Z3/98-151   AC A0A1S4H7Z3
#=GS A0A1S4H7Z3/98-151   OS Anopheles gambiae
#=GS A0A1S4H7Z3/98-151   DE Phosphorylated CTD-interacting factor
#=GS A0A1S4H7Z3/98-151   DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicomorpha; Culicoidea; Culicidae; Anophelinae; Anopheles; Cellia; Anopheles gambiae; 
#=GS D7ELL0/44-94        AC D7ELL0
#=GS D7ELL0/44-94        OS Tribolium castaneum
#=GS D7ELL0/44-94        DE Uncharacterized protein
#=GS D7ELL0/44-94        DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga; Cucujiformia; Tenebrionoidea; Tenebrionidae; Tribolium; Tribolium castaneum; 
#=GS W4Y0L1/128-183      AC W4Y0L1
#=GS W4Y0L1/128-183      OS Strongylocentrotus purpuratus
#=GS W4Y0L1/128-183      DE Uncharacterized protein
#=GS W4Y0L1/128-183      DR ORG; Eukaryota; Metazoa; Echinodermata; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus; Strongylocentrotus purpuratus; 
#=GS C3ZAS4/55-115       AC C3ZAS4
#=GS C3ZAS4/55-115       OS Branchiostoma floridae
#=GS C3ZAS4/55-115       DE Uncharacterized protein
#=GS C3ZAS4/55-115       DR ORG; Eukaryota; Metazoa; Chordata; Cephalochordata; Branchiostomidae; Branchiostoma; Branchiostoma floridae; 
#=GS A0A1S4L2C7/32-79    AC A0A1S4L2C7
#=GS A0A1S4L2C7/32-79    OS Ixodes scapularis
#=GS A0A1S4L2C7/32-79    DE Phosphorylated CTD-interacting factor, putative
#=GS A0A1S4L2C7/32-79    DR ORG; Eukaryota; Metazoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Ixodinae; Ixodes; Ixodes scapularis; 
#=GS A0A0L0CDJ6/186-235  AC A0A0L0CDJ6
#=GS A0A0L0CDJ6/186-235  OS Lucilia cuprina
#=GS A0A0L0CDJ6/186-235  DE Uncharacterized protein
#=GS A0A0L0CDJ6/186-235  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Oestroidea; Calliphoridae; Luciliinae; Lucilia; Lucilia cuprina; 
#=GS A0A1I8NV84/195-244  AC A0A1I8NV84
#=GS A0A1I8NV84/195-244  OS Stomoxys calcitrans
#=GS A0A1I8NV84/195-244  DE Uncharacterized protein
#=GS A0A1I8NV84/195-244  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Muscinae; Stomoxyini; Stomoxys; Stomoxys calcitrans; 
#=GS A0A1I8N1N8/236-285  AC A0A1I8N1N8
#=GS A0A1I8N1N8/236-285  OS Musca domestica
#=GS A0A1I8N1N8/236-285  DE Uncharacterized protein
#=GS A0A1I8N1N8/236-285  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Muscinae; Muscini; Musca; Musca; Musca domestica; 
#=GS A0A0M3QWV6/125-173  AC A0A0M3QWV6
#=GS A0A0M3QWV6/125-173  OS Drosophila busckii
#=GS A0A0M3QWV6/125-173  DE CG11399
#=GS A0A0M3QWV6/125-173  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Dorsilopha; Drosophila busckii; 
#=GS B4LG28/119-168      AC B4LG28
#=GS B4LG28/119-168      OS Drosophila virilis
#=GS B4LG28/119-168      DE Uncharacterized protein
#=GS B4LG28/119-168      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Drosophila; virilis group; Drosophila virilis; 
#=GS B4IYF5/150-199      AC B4IYF5
#=GS B4IYF5/150-199      OS Drosophila grimshawi
#=GS B4IYF5/150-199      DE GH16976
#=GS B4IYF5/150-199      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; grimshawi group; grimshawi subgroup; Drosophila grimshawi; 
#=GS A0A182HHM2/98-151   AC A0A182HHM2
#=GS A0A182HHM2/98-151   OS Anopheles arabiensis
#=GS A0A182HHM2/98-151   DE Uncharacterized protein
#=GS A0A182HHM2/98-151   DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicomorpha; Culicoidea; Culicidae; Anophelinae; Anopheles; Cellia; Anopheles arabiensis; 
#=GS B7PTF7/32-79        AC B7PTF7
#=GS B7PTF7/32-79        OS Ixodes scapularis
#=GS B7PTF7/32-79        DE Phosphorylated CTD-interacting factor, putative
#=GS B7PTF7/32-79        DR ORG; Eukaryota; Metazoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Ixodinae; Ixodes; Ixodes scapularis; 
#=GS B3M9T0/125-174      AC B3M9T0
#=GS B3M9T0/125-174      OS Drosophila ananassae
#=GS B3M9T0/125-174      DE Uncharacterized protein, isoform A
#=GS B3M9T0/125-174      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; ananassae subgroup; Drosophila ananassae; 
#=GS B4H7S2/134-183      AC B4H7S2
#=GS B4H7S2/134-183      OS Drosophila persimilis
#=GS B4H7S2/134-183      DE GL12753
#=GS B4H7S2/134-183      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; obscura group; pseudoobscura subgroup; Drosophila persimilis; 
#=GS Q29DA1/134-183      AC Q29DA1
#=GS Q29DA1/134-183      OS Drosophila pseudoobscura pseudoobscura
#=GS Q29DA1/134-183      DE Uncharacterized protein
#=GS Q29DA1/134-183      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; obscura group; pseudoobscura subgroup; Drosophila pseudoobscura; Drosophila pseudoobscura pseudoobscura; 
#=GS A0A0P9C3V8/125-174  AC A0A0P9C3V8
#=GS A0A0P9C3V8/125-174  OS Drosophila ananassae
#=GS A0A0P9C3V8/125-174  DE Uncharacterized protein, isoform B
#=GS A0A0P9C3V8/125-174  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; ananassae subgroup; Drosophila ananassae; 
#=GS A0A1W4VNP2/137-186  AC A0A1W4VNP2
#=GS A0A1W4VNP2/137-186  OS Drosophila ficusphila
#=GS A0A1W4VNP2/137-186  DE phosphorylated CTD-interacting factor 1
#=GS A0A1W4VNP2/137-186  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; ficusphila subgroup; Drosophila ficusphila; 
#=GS B4QJ68/132-181      AC B4QJ68
#=GS B4QJ68/132-181      OS Drosophila simulans
#=GS B4QJ68/132-181      DE GD12163
#=GS B4QJ68/132-181      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila simulans; 
#=GS B4N733/134-183      AC B4N733
#=GS B4N733/134-183      OS Drosophila willistoni
#=GS B4N733/134-183      DE Uncharacterized protein
#=GS B4N733/134-183      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; willistoni group; willistoni subgroup; Drosophila willistoni; 
#=GS A0A3B0JA03/133-182  AC A0A3B0JA03
#=GS A0A3B0JA03/133-182  OS Drosophila guanche
#=GS A0A3B0JA03/133-182  DE Blast:Peroxisomal membrane protein PEX14
#=GS A0A3B0JA03/133-182  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; obscura group; obscura subgroup; Drosophila guanche; 
#=GS B4IAF4/132-181      AC B4IAF4
#=GS B4IAF4/132-181      OS Drosophila sechellia
#=GS B4IAF4/132-181      DE GM22188
#=GS B4IAF4/132-181      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila sechellia; 
#=GS B4KYG7/123-172      AC B4KYG7
#=GS B4KYG7/123-172      OS Drosophila mojavensis
#=GS B4KYG7/123-172      DE Uncharacterized protein
#=GS B4KYG7/123-172      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Drosophila; repleta group; mulleri subgroup; Drosophila mojavensis; 
#=GS B3NIR5/132-181      AC B3NIR5
#=GS B3NIR5/132-181      OS Drosophila erecta
#=GS B3NIR5/132-181      DE Uncharacterized protein
#=GS B3NIR5/132-181      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila erecta; 
#=GS B4PEQ7/132-181      AC B4PEQ7
#=GS B4PEQ7/132-181      OS Drosophila yakuba
#=GS B4PEQ7/132-181      DE Uncharacterized protein
#=GS B4PEQ7/132-181      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila yakuba; 
#=GF SQ 28
Q9VPB7/132-181              --GEELTAELVNQGWRKFWSKRENRPYYWNKVTGESLWEMP--------GTRP----FDPLTDP
Q960B9/132-181              --GEELTAELVNQGWRKFWSKRENRPYYWNKVTGESLWEMP--------GTRP----FDPLTDP
Q7PV88/93-146               --NEELAPELTQQGWRKFWSKREGRPYFWNKLTGESLWEPPQLN-----RGPPQ---FDPLTDP
A0A1S4H7Z3/98-151           --NEELAPELTQQGWRKFWSKREGRPYFWNKLTGESLWEPPQLN-----RGPPQ---FDPLTDP
D7ELL0/44-94                --EFDLPFELTQQGWRKFWSKRENRPYFWNKLTGESLWEMP--------IAKPQ---FDPITDP
W4Y0L1/128-183              DPSHDLPMELLQKGWRRFWSKREQRWYFFNKFNNQSMWEMPPI------GSPAGPNRHDPLG--
C3ZAS4/55-115               DPVHDLPEEVLRAGWRRFWSKREKRWYYFNKMTGESLWEMPVVHKSPHNGVPGG---SDRITDP
A0A1S4L2C7/32-79            DPVHDLPPELLQVGWRRFWSKREGRPYFFNKLTNESLWEMPRL------GGGLG----------
A0A0L0CDJ6/186-235          --GEELTAELVNQGWRKFWSKRENRPYYWNKITGESLWEMP--------GARP----FDPLTDP
A0A1I8NV84/195-244          --GEELTAELVNQGWRKFWSKRENRPYYWNKITGESLWEMP--------GARP----FDPLTDP
A0A1I8N1N8/236-285          --GEELTAELVVQGWRKFWSKRENRPYYWNKITGESLWEMP--------GARP----FDPLTDP
A0A0M3QWV6/125-173          --GEELTAELVNQGWRKFWSKRENRPYYWNKVTGESLWEMP--------GA-P----FDPLTDP
B4LG28/119-168              --GEELTAELVNQGWRKFWSKRENRPYYWNKVTGESLWEMP--------GARP----FDPLTDP
B4IYF5/150-199              --GEELTAELVNQGWRKFWSKRENRPYYWNKVTGESLWEMP--------GARP----FDPLTDP
A0A182HHM2/98-151           --NEELAPELTQQGWRKFWSKREGRPYFWNKLTGESLWEPPQLN-----RGPPQ---FDPLTDP
B7PTF7/32-79                DPVHDLPPELLQVGWRRFWSKREGRPYFFNKLTNESLWEMPRL------GGGLG----------
B3M9T0/125-174              --GEELTAELVNQGWRKFWSKRENRPYYWNKVTGESLWEMP--------GTRP----FDPLTDP
B4H7S2/134-183              --GEELTAELVNQGWRKFWSKRENRPYYWNKVTGESLWEMP--------GTRP----FDPLTDP
Q29DA1/134-183              --GEELTAELVNQGWRKFWSKRENRPYYWNKVTGESLWEMP--------GTRP----FDPLTDP
A0A0P9C3V8/125-174          --GEELTAELVNQGWRKFWSKRENRPYYWNKVTGESLWEMP--------GTRP----FDPLTDP
A0A1W4VNP2/137-186          --GEELTAELVNQGWRKFWSKRENRPYYWNKVTGESLWEMP--------GTRP----FDPLTDP
B4QJ68/132-181              --GEELTAELVNQGWRKFWSKRENRPYYWNKVTGESLWEMP--------GTRP----FDPLTDP
B4N733/134-183              --GEELTAELVNQGWRKFWSKRENRPYYWNKVTGESLWEMP--------GTRP----FDPLTDP
A0A3B0JA03/133-182          --GEELTAELVNQGWRKFWSKRENRPYYWNKVTGESLWEMP--------GTRP----FDPLTDP
B4IAF4/132-181              --GEELTAELVNQGWRKFWSKRENRPYYWNKVTGESLWEMP--------GTRP----FDPLTDP
B4KYG7/123-172              --GEELTGELVNQGWRKFWSKRENRPYYWNKVTGESLWEMP--------GARP----FDPLTDP
B3NIR5/132-181              --GEELTAELVTQGWRKFWSKRENRPYYWNKVTGESLWEMP--------GTRP----FDPLTDP
B4PEQ7/132-181              --GEELTAELVNQGWRKFWSKRENRPYYWNKVTGESLWEMP--------GTRP----FDPLTDP
#=GC scorecons              0045795498555999799999959697599586898997901000000644510004655544
#=GC scorecons_70           ____**__**___**********_*_**_**_*********________*______________
#=GC scorecons_80           _____*__**___**********_*_**_**_*_*****_*_______________________
#=GC scorecons_90           _____*__**___***_******_*_*__**___*****_*_______________________
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