# STOCKHOLM 1.0 #=GF ID 2.20.70.10/FF/000101 #=GF DE Pre-mRNA-processing factor 40 #=GF AC 2.20.70.10/FF/000101 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 79.397 #=GS Q9VQK5/90-145 AC Q9VQK5 #=GS Q9VQK5/90-145 OS Drosophila melanogaster #=GS Q9VQK5/90-145 DE LD24714p #=GS Q9VQK5/90-145 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila melanogaster; #=GS Q9VQK5/90-145 DR GO; GO:0000398; GO:0005685; GO:0071011; #=GS F5H578/182-222 AC F5H578 #=GS F5H578/182-222 OS Homo sapiens #=GS F5H578/182-222 DE Pre-mRNA-processing factor 40 homolog A #=GS F5H578/182-222 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; #=GS F5H578/182-222 DR GO; GO:0005829; GO:0016607; #=GS Q05C41/140-180 AC Q05C41 #=GS Q05C41/140-180 OS Homo sapiens #=GS Q05C41/140-180 DE PRPF40A protein #=GS Q05C41/140-180 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; #=GS W4YM54/219-265 AC W4YM54 #=GS W4YM54/219-265 OS Strongylocentrotus purpuratus #=GS W4YM54/219-265 DE Uncharacterized protein #=GS W4YM54/219-265 DR ORG; Eukaryota; Metazoa; Echinodermata; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus; Strongylocentrotus purpuratus; #=GS Q7PNE5/92-146 AC Q7PNE5 #=GS Q7PNE5/92-146 OS Anopheles gambiae #=GS Q7PNE5/92-146 DE AGAP008263-PA #=GS Q7PNE5/92-146 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicomorpha; Culicoidea; Culicidae; Anophelinae; Anopheles; Cellia; Anopheles gambiae; #=GS A0A1S4GXR9/126-180 AC A0A1S4GXR9 #=GS A0A1S4GXR9/126-180 OS Anopheles gambiae #=GS A0A1S4GXR9/126-180 DE Pre-mRNA-processing factor 40 #=GS A0A1S4GXR9/126-180 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicomorpha; Culicoidea; Culicidae; Anophelinae; Anopheles; Cellia; Anopheles gambiae; #=GS F6R9M3/174-228 AC F6R9M3 #=GS F6R9M3/174-228 OS Xenopus tropicalis #=GS F6R9M3/174-228 DE Pre-mRNA-processing factor 40 homolog A #=GS F6R9M3/174-228 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana; Xenopus tropicalis; #=GS A0A0Q3USY7/88-127 AC A0A0Q3USY7 #=GS A0A0Q3USY7/88-127 OS Amazona aestiva #=GS A0A0Q3USY7/88-127 DE Pre-mRNA-processing factor 40 A #=GS A0A0Q3USY7/88-127 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Aves; Neognathae; Psittaciformes; Psittacidae; Amazona; Amazona aestiva; #=GS A0A084W4U2/119-172 AC A0A084W4U2 #=GS A0A084W4U2/119-172 OS Anopheles sinensis #=GS A0A084W4U2/119-172 DE AGAP008263-PA-like protein #=GS A0A084W4U2/119-172 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicomorpha; Culicoidea; Culicidae; Anophelinae; Anopheles; Anopheles; Laticorn; Myzorhynchus; hyrcanus group; Anopheles sinensis; #=GS W5JFM9/121-175 AC W5JFM9 #=GS W5JFM9/121-175 OS Anopheles darlingi #=GS W5JFM9/121-175 DE U1 small nuclear ribonucleoprotein #=GS W5JFM9/121-175 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicomorpha; Culicoidea; Culicidae; Anophelinae; Anopheles; Nyssorhynchus; darlingi group; Anopheles darlingi; #=GS A0A182Y3H6/117-171 AC A0A182Y3H6 #=GS A0A182Y3H6/117-171 OS Anopheles stephensi #=GS A0A182Y3H6/117-171 DE Uncharacterized protein #=GS A0A182Y3H6/117-171 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicomorpha; Culicoidea; Culicidae; Anophelinae; Anopheles; Cellia; Anopheles stephensi; #=GS A0A182NU18/117-171 AC A0A182NU18 #=GS A0A182NU18/117-171 OS Anopheles dirus #=GS A0A182NU18/117-171 DE Uncharacterized protein #=GS A0A182NU18/117-171 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicomorpha; Culicoidea; Culicidae; Anophelinae; Anopheles; Cellia; leucosphyrus group; leucosphyrus subgroup; Anopheles dirus; #=GS B3DL77/174-228 AC B3DL77 #=GS B3DL77/174-228 OS Xenopus tropicalis #=GS B3DL77/174-228 DE LOC100170464 protein #=GS B3DL77/174-228 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana; Xenopus tropicalis; #=GS B4MW11/102-155 AC B4MW11 #=GS B4MW11/102-155 OS Drosophila willistoni #=GS B4MW11/102-155 DE Uncharacterized protein #=GS B4MW11/102-155 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; willistoni group; willistoni subgroup; Drosophila willistoni; #=GS B4I2U4/90-145 AC B4I2U4 #=GS B4I2U4/90-145 OS Drosophila sechellia #=GS B4I2U4/90-145 DE GM18387 #=GS B4I2U4/90-145 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila sechellia; #=GS A0A1W4UTB1/89-144 AC A0A1W4UTB1 #=GS A0A1W4UTB1/89-144 OS Drosophila ficusphila #=GS A0A1W4UTB1/89-144 DE LOW QUALITY PROTEIN: pre-mRNA-processing factor 40 homolog A #=GS A0A1W4UTB1/89-144 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; ficusphila subgroup; Drosophila ficusphila; #=GS A0A0J9QVI7/90-145 AC A0A0J9QVI7 #=GS A0A0J9QVI7/90-145 OS Drosophila simulans #=GS A0A0J9QVI7/90-145 DE Uncharacterized protein #=GS A0A0J9QVI7/90-145 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila simulans; #=GF SQ 17 Q9VQK5/90-145 -LLHNQCPWKEYRSDTGKVYYHNVATKETCWEPPPEYVDMKAKAKAEEAAA-AAKAVA F5H578/182-222 ---LSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLEGYQ-------------- Q05C41/140-180 ---LSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLEGYQ-------------- W4YM54/219-265 ----TECPWKEFKSDSGKVYFHNSQTKESKWTIPKDLEEIKNRIAAEGLEK------- Q7PNE5/92-146 ---LSQCPWKEYRSDSGKLYYHNTATKESQWVAPPEYLELKEKVAAEQAAAEAAKAAA A0A1S4GXR9/126-180 ---LSQCPWKEYRSDSGKLYYHNTATKESQWVAPPEYLELKEKVAAEQAAAEAAKAAA F6R9M3/174-228 EQLLSKCPWKEFKSDSGKPYYYNSQTKESRWAKPKELEEVEVMIKAEENSSASEE--- A0A0Q3USY7/88-127 ---LSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLEVN--------------- A0A084W4U2/119-172 ---LSQCPWKEYRSDTGKLYYHNTNTKESQWVAPPEFLELKEKVAAEQAAAEAAKAA- W5JFM9/121-175 ---LSQCPWKEYRSDTGKLYYHNTNTKESQWVAPPEYLELKEKVAAEQAAAEAAKAAA A0A182Y3H6/117-171 ---LSQCPWKEYRSDAGKLYYHNTLTKESQWVAPPEYLELKEKVAAEQAAAEAAKAAA A0A182NU18/117-171 ---LSQCPWKEYRSDAGKLYYHNTVTKESQWVAPQEYLELKEKVAAEQAAAEAAKAAA B3DL77/174-228 EQLLSKCPWKEFKSDSGKPYYYNSQTKESRWAKPKELEEVEVMIKAEENSSASEE--- B4MW11/102-155 ---HTQCPWKEYHSDAGKVYYHNVATKETCWEPPPEYVDMKVKAKAEEAAA-AAKAVA B4I2U4/90-145 -LLHNQCPWKEYRSDTGKVYYHNVATKETCWEPPPEYVDMKAKAKAEEAAA-AAKAVA A0A1W4UTB1/89-144 -LLHNQCPWKEYRSDTGKVYYHNVATKETCWEPPPEYVDMKAKAKAEEAAA-AAKAVA A0A0J9QVI7/90-145 -LLHNQCPWKEYRSDTGKVYYHNVATKETCWEPPPEYVDMKAKAKAEEAAA-AAKAVA #=GC scorecons 0004669999976995994987944999649449585475634335533330333212 #=GC scorecons_70 ______*********_**_****__****_*__*_*__*_*_________________ #=GC scorecons_80 ______******_**_**_****__***__*__*_*______________________ #=GC scorecons_90 ______*****__**_**_**_*__***__*__*_*______________________ //