# STOCKHOLM 1.0
#=GF ID 2.20.25.10/FF/000037
#=GF DE Transcription initiation factor IIB
#=GF AC 2.20.25.10/FF/000037
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 81.859
#=GS O16991/1-51       AC O16991
#=GS O16991/1-51       OS Caenorhabditis elegans
#=GS O16991/1-51       DE Transcription initiation factor IIB
#=GS O16991/1-51       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS Q58192/36-83      AC Q58192
#=GS Q58192/36-83      OS Methanocaldococcus jannaschii DSM 2661
#=GS Q58192/36-83      DE Transcription initiation factor IIB
#=GS Q58192/36-83      DR ORG; Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus; Methanocaldococcus jannaschii; 
#=GS Q8ZTC0/10-55      AC Q8ZTC0
#=GS Q8ZTC0/10-55      OS Pyrobaculum aerophilum str. IM2
#=GS Q8ZTC0/10-55      DE Transcription initiation factor IIB (TFIIB)
#=GS Q8ZTC0/10-55      DR ORG; Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Pyrobaculum; Pyrobaculum aerophilum; 
#=GS C9REA0/29-76      AC C9REA0
#=GS C9REA0/29-76      OS Methanocaldococcus vulcanius M7
#=GS C9REA0/29-76      DE Transcription initiation factor IIB
#=GS C9REA0/29-76      DR ORG; Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus; Methanocaldococcus vulcanius; 
#=GS A0A076LCM9/33-79  AC A0A076LCM9
#=GS A0A076LCM9/33-79  OS Methanocaldococcus bathoardescens
#=GS A0A076LCM9/33-79  DE Transcription initiation factor IIB
#=GS A0A076LCM9/33-79  DR ORG; Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus; Methanocaldococcus bathoardescens; 
#=GS H3G0M1/1-49       AC H3G0M1
#=GS H3G0M1/1-49       OS Pristionchus pacificus
#=GS H3G0M1/1-49       DE Uncharacterized protein
#=GS H3G0M1/1-49       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Diplogasteromorpha; Diplogasteroidea; Neodiplogasteridae; Pristionchus; Pristionchus pacificus; 
#=GS E3LKT9/1-51       AC E3LKT9
#=GS E3LKT9/1-51       OS Caenorhabditis remanei
#=GS E3LKT9/1-51       DE CRE-TTB-1 protein
#=GS E3LKT9/1-51       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis remanei; 
#=GS A8X282/1-51       AC A8X282
#=GS A8X282/1-51       OS Caenorhabditis briggsae
#=GS A8X282/1-51       DE Protein CBR-TTB-1
#=GS A8X282/1-51       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS A0A261BKV4/2-51   AC A0A261BKV4
#=GS A0A261BKV4/2-51   OS Caenorhabditis latens
#=GS A0A261BKV4/2-51   DE Uncharacterized protein
#=GS A0A261BKV4/2-51   DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis latens; 
#=GS G0PNB5/1-51       AC G0PNB5
#=GS G0PNB5/1-51       OS Caenorhabditis brenneri
#=GS G0PNB5/1-51       DE Uncharacterized protein
#=GS G0PNB5/1-51       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis brenneri; 
#=GS A0A2G5TDW7/1-51   AC A0A2G5TDW7
#=GS A0A2G5TDW7/1-51   OS Caenorhabditis nigoni
#=GS A0A2G5TDW7/1-51   DE Uncharacterized protein
#=GS A0A2G5TDW7/1-51   DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS A0A2H2HVC7/1-51   AC A0A2H2HVC7
#=GS A0A2H2HVC7/1-51   OS Caenorhabditis japonica
#=GS A0A2H2HVC7/1-51   DE Uncharacterized protein
#=GS A0A2H2HVC7/1-51   DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis japonica; 
#=GS A0A2G5TE72/1-51   AC A0A2G5TE72
#=GS A0A2G5TE72/1-51   OS Caenorhabditis nigoni
#=GS A0A2G5TE72/1-51   DE Uncharacterized protein
#=GS A0A2G5TE72/1-51   DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS E3LKL8/2-51       AC E3LKL8
#=GS E3LKL8/2-51       OS Caenorhabditis remanei
#=GS E3LKL8/2-51       DE Uncharacterized protein
#=GS E3LKL8/2-51       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis remanei; 
#=GS G0NBC8/1-51       AC G0NBC8
#=GS G0NBC8/1-51       OS Caenorhabditis brenneri
#=GS G0NBC8/1-51       DE Uncharacterized protein
#=GS G0NBC8/1-51       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis brenneri; 
#=GS A0A2G5TDM0/1-51   AC A0A2G5TDM0
#=GS A0A2G5TDM0/1-51   OS Caenorhabditis nigoni
#=GS A0A2G5TDM0/1-51   DE Uncharacterized protein
#=GS A0A2G5TDM0/1-51   DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS A0A261CDY7/1-51   AC A0A261CDY7
#=GS A0A261CDY7/1-51   OS Caenorhabditis latens
#=GS A0A261CDY7/1-51   DE Uncharacterized protein
#=GS A0A261CDY7/1-51   DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis latens; 
#=GF SQ 17
O16991/1-51               MSAPVQCPIHPD-VHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNER
Q58192/36-83              REEEIVCPICGS-KEVVKDYERAEIVCAKCGCVIKEKLFDIGPEWRAFD---
Q8ZTC0/10-55              --EEYACPACGAVNDVIVDYERGQVICKSCGVVLKDGIADLGPEWRKP----
C9REA0/29-76              KDEEIVCPICGS-REVVKDYERAEIVCAKCGCVIKEKLFDIGPEWRAFD---
A0A076LCM9/33-79          -EEEIICPICGS-KEVVKDYERAEIVCAKCGCVIKEKLFDIGPEWRAFD---
H3G0M1/1-49               --MSLSCPDHPY-AHLVEDHRAGDVICPECGRVVGDRLVDVGTEWRSFSNER
E3LKT9/1-51               MSAPVQCPIHPD-VHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNER
A8X282/1-51               MSAPVQCPVHPD-VHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNER
A0A261BKV4/2-51           -SGPVQCPHHPD-VHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNEK
G0PNB5/1-51               MSAPVQCPVHPD-VHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNER
A0A2G5TDW7/1-51           MSAPVQCPVHPD-VHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNER
A0A2H2HVC7/1-51           MSAPVQCPIHPE-MHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNER
A0A2G5TE72/1-51           MSAPVQCPVHPD-VHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNER
E3LKL8/2-51               -SGPVQCPHHPD-VHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNEK
G0NBC8/1-51               MSAPVQCPVHPD-VHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNER
A0A2G5TDM0/1-51           MSAPVQCPVHPD-VHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNER
A0A261CDY7/1-51           MSAPVQCPVHPD-VHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNER
#=GC scorecons            1344539945540356759755665795499496576759696999574222
#=GC scorecons_70         ______**_______**_**__*__**__**_**_*_*_***_***_*____
#=GC scorecons_80         ______**__________*______**__**_*__*_*_*_*_***_*____
#=GC scorecons_90         ______**__________*_______*__**_*______*_*_***______
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