# STOCKHOLM 1.0
#=GF ID 2.20.25.10/FF/000029
#=GF DE DNA-directed RNA polymerase subunit M
#=GF AC 2.20.25.10/FF/000029
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 71.334
#=GS 1qypA00/1-57       AC Q56254
#=GS 1qypA00/1-57       OS Thermococcus celer
#=GS 1qypA00/1-57       DE Transcription factor S
#=GS 1qypA00/1-57       DR CATH; 1qyp; A:1-57; 
#=GS 1qypA00/1-57       DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus; Thermococcus celer; 
#=GS 1qypA00/1-57       DR GO; GO:0006355; GO:0008270; 
#=GS O27369/49-104      AC O27369
#=GS O27369/49-104      OS Methanothermobacter thermautotrophicus str. Delta H
#=GS O27369/49-104      DE Transcription factor S
#=GS O27369/49-104      DR ORG; Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanothermobacter; Methanothermobacter thermautotrophicus; 
#=GS O27369/49-104      DR GO; GO:0006355; GO:0008270; 
#=GS Q58548/52-108      AC Q58548
#=GS Q58548/52-108      OS Methanocaldococcus jannaschii DSM 2661
#=GS Q58548/52-108      DE Transcription factor S
#=GS Q58548/52-108      DR ORG; Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus; Methanocaldococcus jannaschii; 
#=GS Q58548/52-108      DR GO; GO:0006355; GO:0008270; 
#=GS Q6LXC3/50-105      AC Q6LXC3
#=GS Q6LXC3/50-105      OS Methanococcus maripaludis S2
#=GS Q6LXC3/50-105      DE Transcription factor TFIIS:DNA-directed RNA polymerase, M/15 kDa subunit
#=GS Q6LXC3/50-105      DR ORG; Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanococcaceae; Methanococcus; Methanococcus maripaludis; 
#=GS Q07271/57-111      AC Q07271
#=GS Q07271/57-111      OS Sulfolobus acidocaldarius DSM 639
#=GS Q07271/57-111      DE Transcription factor S
#=GS Q07271/57-111      DR ORG; Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Sulfolobus; Sulfolobus acidocaldarius; 
#=GS Q07271/57-111      DR GO; GO:0006355; GO:0008270; 
#=GS Q9P9I8/50-105      AC Q9P9I8
#=GS Q9P9I8/50-105      OS Methanothermococcus thermolithotrophicus
#=GS Q9P9I8/50-105      DE Transcription factor S
#=GS Q9P9I8/50-105      DR ORG; Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanococcaceae; Methanothermococcus; Methanothermococcus thermolithotrophicus; 
#=GS Q9P9I8/50-105      DR GO; GO:0006355; GO:0008270; 
#=GS F6BCY6/50-105      AC F6BCY6
#=GS F6BCY6/50-105      OS Methanotorris igneus Kol 5
#=GS F6BCY6/50-105      DE Transcription termination factor Tfs
#=GS F6BCY6/50-105      DR ORG; Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanotorris; Methanotorris igneus; 
#=GS A0A097QVH5/55-110  AC A0A097QVH5
#=GS A0A097QVH5/55-110  OS Thermococcus eurythermalis
#=GS A0A097QVH5/55-110  DE DNA-directed RNA polymerase subunit M
#=GS A0A097QVH5/55-110  DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus; Thermococcus eurythermalis; 
#=GS A0A223Z2G2/49-104  AC A0A223Z2G2
#=GS A0A223Z2G2/49-104  OS Methanothermobacter sp. EMTCatA1
#=GS A0A223Z2G2/49-104  DE Uncharacterized protein
#=GS A0A223Z2G2/49-104  DR ORG; Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanothermobacter; Methanothermobacter sp. EMTCatA1; 
#=GS D9PYH1/50-104      AC D9PYH1
#=GS D9PYH1/50-104      OS Methanothermobacter marburgensis str. Marburg
#=GS D9PYH1/50-104      DE Predicted DNA-directed RNA polymerase, subunit M
#=GS D9PYH1/50-104      DR ORG; Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanothermobacter; Methanothermobacter marburgensis; 
#=GS A0A1M4MU94/50-104  AC A0A1M4MU94
#=GS A0A1M4MU94/50-104  OS Methanothermobacter wolfeii
#=GS A0A1M4MU94/50-104  DE Transcription factor S
#=GS A0A1M4MU94/50-104  DR ORG; Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanothermobacter; Methanothermobacter wolfeii; 
#=GS H1KZD4/50-105      AC H1KZD4
#=GS H1KZD4/50-105      OS Methanotorris formicicus Mc-S-70
#=GS H1KZD4/50-105      DE Transcription termination factor Tfs
#=GS H1KZD4/50-105      DR ORG; Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanotorris; Methanotorris formicicus; 
#=GS Q56254/55-110      AC Q56254
#=GS Q56254/55-110      OS Thermococcus celer
#=GS Q56254/55-110      DE Transcription factor S
#=GS Q56254/55-110      DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus; Thermococcus celer; 
#=GS Q56254/55-110      DR GO; GO:0006355; GO:0008270; 
#=GS M1I1H6/57-111      AC M1I1H6
#=GS M1I1H6/57-111      OS Sulfolobus acidocaldarius N8
#=GS M1I1H6/57-111      DE Putative DNA-directed RNA polymerase subunit M
#=GS M1I1H6/57-111      DR ORG; Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Sulfolobus; Sulfolobus acidocaldarius; 
#=GS A0A0U2NFY8/57-111  AC A0A0U2NFY8
#=GS A0A0U2NFY8/57-111  OS Sulfolobus acidocaldarius
#=GS A0A0U2NFY8/57-111  DE DNA-directed RNA polymerase subunit M
#=GS A0A0U2NFY8/57-111  DR ORG; Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Sulfolobus; Sulfolobus acidocaldarius; 
#=GS M1I956/57-111      AC M1I956
#=GS M1I956/57-111      OS Sulfolobus acidocaldarius Ron12/I
#=GS M1I956/57-111      DE Putative DNA-directed RNA polymerase subunit M
#=GS M1I956/57-111      DR ORG; Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Sulfolobus; Sulfolobus acidocaldarius; 
#=GS A0A218P285/55-110  AC A0A218P285
#=GS A0A218P285/55-110  OS Thermococcus celer Vu 13 = JCM 8558
#=GS A0A218P285/55-110  DE Transcription factor S
#=GS A0A218P285/55-110  DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus; Thermococcus celer; 
#=GS G0H2H5/50-105      AC G0H2H5
#=GS G0H2H5/50-105      OS Methanococcus maripaludis X1
#=GS G0H2H5/50-105      DE DNA-directed RNA polymerase subunit M
#=GS G0H2H5/50-105      DR ORG; Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanococcaceae; Methanococcus; Methanococcus maripaludis; 
#=GS A0A2L1CBP1/50-105  AC A0A2L1CBP1
#=GS A0A2L1CBP1/50-105  OS Methanococcus maripaludis
#=GS A0A2L1CBP1/50-105  DE Transcription factor S-II
#=GS A0A2L1CBP1/50-105  DR ORG; Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanococcaceae; Methanococcus; Methanococcus maripaludis; 
#=GS A0A2Z5PFB8/50-105  AC A0A2Z5PFB8
#=GS A0A2Z5PFB8/50-105  OS Methanococcus maripaludis KA1
#=GS A0A2Z5PFB8/50-105  DE DNA-directed RNA polymerase subunit M
#=GS A0A2Z5PFB8/50-105  DR ORG; Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanococcaceae; Methanococcus; Methanococcus maripaludis; 
#=GS A0A2Z5PH87/50-105  AC A0A2Z5PH87
#=GS A0A2Z5PH87/50-105  OS Methanococcus maripaludis OS7
#=GS A0A2Z5PH87/50-105  DE DNA-directed RNA polymerase subunit M
#=GS A0A2Z5PH87/50-105  DR ORG; Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanococcaceae; Methanococcus; Methanococcus maripaludis; 
#=GF SQ 21
1qypA00/1-57               GSHMEQDLKTLP------TTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRSYE
O27369/49-104              -IFTGDDVNTLP------TTRVECPKCGNMEAFWWLQQTRRADESETRFFRCTRCKHTWREYD
Q58548/52-108              TVIESEGLETLP------TTRIECPKCGHNEAYWWLQQTRCADEPETRFYKCKKCGHTWREYD
Q6LXC3/50-105              -VTVIENVDTLP------TTRIECPNCGNMEAFWWLQQTRCADEPETRFYKCKKCSHTWREYD
Q07271/57-111              --------SDMPKTGVQLTRGISCPSCGNDEAYFWILQTRSADEPATRFYKCTKCGKVWREYE
Q9P9I8/50-105              -VTVIEDVDTLP------TTRIECPSCGNMEASWWLQQTRCADEPETRFYKCKKCGHTWREYD
F6BCY6/50-105              -VTVIEQVDTLP------TTRVECPKCGHMEASWWLQQTRCADEPETRFYKCKKCGHTWREYD
A0A097QVH5/55-110          -VVIEQDLKTLP------TTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGYTWRAYE
A0A223Z2G2/49-104          -IFTGDDVNTLP------TTRVECPKCGNMEAFWWLQQTRRADESETRFFRCTRCKHTWREYD
D9PYH1/50-104              --FTGDDVSTLP------TTRVECPKCGNMEAFWWLQQTRRADESETRFFRCTRCKYTWREYD
A0A1M4MU94/50-104          --FTGDDVGTLP------TTRAECPKCGNMEAFWWLQQTRRADESETRFFRCTRCKYTWREYD
H1KZD4/50-105              -VTVIEQVDTLP------TIRIECPKCGHMEAYWWLQQTRCADEPETRFYKCKKCGHTWREYD
Q56254/55-110              -VVIEQDLKTLP------TTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRSYE
M1I1H6/57-111              --------SDMPKTGVQLTRGISCPSCGNDEAYFWILQTRSADEPATRFYKCTKCGKVWREYE
A0A0U2NFY8/57-111          --------SDMPKTGVQLTRGISCPSCGNDEAYFWILQTRSADEPATRFYKCTKCGKVWREYE
M1I956/57-111              --------SDMPKTGVQLTRGISCPSCGNDEAYFWILQTRSADEPATRFYKCTKCGKVWREYE
A0A218P285/55-110          -VVIEQDLKTLP------TTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRSYE
G0H2H5/50-105              -VTVIENVDTLP------TTRIECPNCGNMEAFWWLQQTRCADEPETRFYKCKKCSHTWREYD
A0A2L1CBP1/50-105          -VTVIENVDTLP------TTRIECPNCGNMEAFWWLQQTRCADEPETRFYKCKKCSHTWREYD
A0A2Z5PFB8/50-105          -VTVIENVDTLP------TTRIECPNCGNMEAFWWLQQTRCADEPETRFYKCKKCSHTWREYD
A0A2Z5PH87/50-105          -VTVIENVDTLP------TTRIECPNCGNMEAFWWLQQTRCADEPETRFYKCKKCSHTWREYD
#=GC scorecons             022223234679000000955749959974696694499947997496987957955699697
#=GC scorecons_70          __________**______*__*_**_***_***_*__***_****_*_****_**__******
#=GC scorecons_80          __________**______*__*_**_***__*__*__***__***_*_****_**___**_*_
#=GC scorecons_90          ___________*______*____**_**___*__*__***__**__*_*__*__*___**_*_
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